Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0323000 |
| Transcript ID | LotjaGi5g1v0323000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G49970.1 CLP protease proteolytic subunit 1; Swiss-Prot: sp|Q9XJ35|CLPR1_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic; TrEMBL-Plants: tr|A0A0B2SC32|A0A0B2SC32_GLYSO ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi5g1v0323000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64141810..64146428) extracted from Lotus japonicus Gifu genome v1.2.
GATTTTTATAAAATCAAATCCAAAAATAATGGGTGGATGAAACCCGAACCCGTTTACCACTAGAACTGGACTGAAATACA CAAAAACCAAACTCGTCTTCCACACTCACTCGCCTTCATTGAAAAATCCAGAGTTCCGTGTTTCCAAATCATGTCCACTT CTTCTCTCTTATCGTCACTCTCTTCCCCCTTCATCCACGATTCTGCACCTGCTCGCCATGGAACGAAGCTCCTTCCTTCT CCTCACTCCATCACCACGCGATGCTCCAAGTATTTTTCTGCTAAGTGCTCCCTCGACCACATCCCCAAGCAGTTCCGGCA GGAAAATCTCAAAGATGGATGTCAGTTTCTGCAAATTTCCCTCCTAATTTACTCTGTTGAATTTTGTTTTCATTGGAAAG AAGATTAAGCTAAACAAAAATTAACCCCACCCCCAATTTGGGTCTGAATTCATTTAGGTTTTTTTTTTATCTCTTAATCA AGCTTGGCATGTGATTGAAGCTGAAATTAGCATTGTTTAGTGTTTACTTTTATCATTATCATTGTTTTACCCCCATTAAT TTCATTGTGAAGTTGAATTGTTGTTCATGCATTTCTTATTGAGCTAGTATATGTGCTTGGTCATTTACGCCCTTTAAAAG GTTAATTATTTTAATTACATGAAGATTTTGCCCAAACCAAATTTAGGATACCAACTCTAGAATCATGTAATTTACACCAG TCTAGTTTCAAAACCACAGCTCCATAAATCAGCAGAAAGGTGTGAAACTATGTGCATGAATTGTAGGAATTGAAAATAGT TAGACATTGTGATTCTGCCTGGCAACACTAGAGGATGCAATATTTGACAAGGCTATTTCATGTTTTGGCTAAGAAAATAA CAACAGGCTTCTTCATTTTCATTTTTGGTTCCTAAAATCTATAAGGTGAAAGGGGGGGGGGGTAAGGTAAAGTTTGTTAT GAAACATGAGGATTGGGGGATGGGTAAATGTAAGGTTTCAAATTGGGGTTCTGCAATTAATTTTATAAGACTTCCAGAGA GGTTGTAATTTACCGATATATAAAATAAATTAAAGAGGATCTTACTTAAGTTTGATTTAAGAATTTGAAATTTGGGTGCT CGACCTTCAATTTTATCTTCTCTGTCATTTGCAGTGATGGACAACTTCAAGAATGCACCTAAATTTTTATATGGCCTTTC TCCATCACAAATGGACATGTTCATGACCGAAGATAATCCTGCCAGCAAGCAGGCTGAAAGAGTTACAGAGGTTGTTAGTT GTCACCATTTAAAACCTCTTGTTATCGCCTAAGTGACTGAACTTTTTATAGAAAGATTGTTCATTGTGGATTTGATTTTG CAAAGCACCCAAATTTTATCACTGCTTATTCTACTGTTCTGAAGTGCTCTTATTTTTAATTATTGTAACAGGATAGCATC TCATCTGCCAAGAATTATTTGGATCATGGTGGAATGTGGAGTATGTCTAGCTCGGACAATAATGGCCCTGCAAAATACAG CATGAGTGTTAGTATGTATCGAGGAGGAGGTAGGGGAGGCGGAAGGCCTAGAACTGCTCCCCCGGACCTGCCTTCTCTGC TTTTGGATGCTCGAATATGCTATCTCGGTATGCCGGTAAGTATCATGATGTGTACCATTTTGATCTCGATCCTGGTCTTG ATGATTACCATTTTTTTACTGCTTTCGTATGTAGATATTTACCATCTATAATTTTTACCTACATCTTGATATTCTCTTTA TTACTGATGCAGATTGTTCCAGCTGTCACAGAACTTCTTGTTGCTCAATTTATGTGGTTGGATTATGATAACCCTACCAA ACCTATTTACTTATATATTAATTCATCTGGAACCCAAGTATGTGTTATAGCCATTGCTCCAAAAAATTTCCTTCCGACGA TATATGATGTGTTGACTTATATAATTCGTATTCCTTTACTTTTATTTTCTGTTTAGAATGAGAAGAATGAGACCGTGGGA TCAGAAACTGAAGCCTACTCTATTGCGGATATGATGTCTGTAAGTTGTTATCATAAATCATGTGCCACTTCTACACCCAC ATTATTGCTGTGATTTGGTTTATCTCTTTGAACTCATCCTTGTAACTCATTCTATTAATTAATCGTTCTTTTTTTGTTTC AACCTGAAGTATGTCAAAGCTGATGTCTATACTGTGAATTGTGGCATGGCATATGGCCAAGCAGCAATGCTTCTCTCACT TGGAGCAAAGGGTTATCGCGCTCTACAGCCAAATTCATCCAGTACGAATCATATCTATATAAACTTTTGAAAATATTTGC TTGATTGCTTTACTTGTTTAGTGTAGCTTTTTGGAACTTATGACAAATGCTTCCTTTTAGAACCTATGCTTAGTATCTGA TTGGTGAATATGTTTGGAGAATGGACAATGAACTATTGATTTATAATTTCACAATCATTTCTTTGTCATCACTCATCACT TATAACATCTATTGGTCAAATGGCTACTGACATGCTGTTAAGAAGTATTTTCCAGAAGATTAGTTTGATAAATTCTAGTT CTTTAGGAGCCGTAGAGCTAGGACTAGGAGGCTAAATAATGATTAGTGTGCATTTGAACCCTCGTATTCGATATTGTACT TTGAAACTGGTGTATCACCATACGACTGATGAAAAACAATCCTCTCTTCCCAGGAACAAATAAACATTTTTTCGTATTTG ATTAATGCTATTATCTTCTACCATACTTTATACAAAAACATGGCCTGCATGACCATGGAATGAAAGGCTGCTACTGAAGG GTCATTAATTAGTTATGGTTTTTTTTCTTCCTGTTTGTGTCATTCATACTATTTATTTCCAGACTCCATAGCACAATTAT AACCTAATTTTCTTTGCGTATTTGGTACATATGGCCCTTCTATGACTGTTATTTGTTGCGGACATCCTGTCAGCACGATA CAATGAGAATTTAGGAAGGCAAATTTAAATGTCTTGATAGAATTGCATACAATGCCTTCTATACTGGCTGATACATTTTT TTTTTTCTCTCCAATGCTGTTGATATTATTTTAAGGCTTTCTTCTTTGTTTATTGCTATTTTTGAAATGGAGTGGAATTG TTTCTTAAATAAAAAAGTAGAAAGATAAATGATTGTATCTCCTCCCCTTTTGTTTCCATCAATTCTAATGGGCTACTTTT GAACATCGTGCTCCTTGATGTCGTGCCATCTAGCATTGCTGTTTTTATAGAATATGTGGAGTATAAGGATGTAGATTTTG AGCATTGCCTTCTCTTACTGTGGATTCTAAATTGTTTTCTATTGCAGCAAAATTATATCTTCCAAAAGTTAACAGATCAA GTGGTGCTGCTATAGACATGTGGATTAAGGTACTGTGACTTTCTCTACCTGTTTGTTCGCTGCAGTGTCTCTTTATCTTT GTTTTGGACTTCCATTTATCAATTATATTGGCTAACACAACAGGCAAAAGAGTTGGAAGCGAATTCTGATTATTACATTG AGCTGTTGGCGAAAGGAATTGGGAAATCAAAGGAAGAAGTTGCTAAAGATGTCCAGAGGCCTAGATATTTTCAACCAAAG GAAGCCATAGAGTACGGAATCGCTGACAAAATAATTGATTCTCAGGATGCTGCATTTGAGAAGCGGGTAACATTTCAATG CATTTAATGTTTATTCTCTGTAAACATATATTCATCATATACTTATCATGATTGCTTTCTGGATCAGAATTATGATGAAA TGCTTGCTCAATCAAGAGCTATGAGGAAACAAGCTGGTGGCAATCCTCAAGCAGCTCCTTCAGGATTTAGGTAATCTCAC ACAGGAGTATGATTCTCTCATGTCACATGACAGTATCATGTGAAGTTTCCACATGAGAGAATATCCTCACACAAAACATG AGGACATCTATTCTGCTCCGCATCGGTGTTGGTGGGTGGGTTTGGTTCAAGTTGACGCATAGTATAGAAAGGTCAAGCAG CTATCTTCTTATATCAAGGCCAAATGGAAATTTTATCTATGCAGTGAATCGTGGTTCTTGGGGTGATTTGTTATATACTT ATATTTTTAGTCGAATCCCCTGTGCTTTGTTTCAACAACTAAAGAAAATGACCAGTGCTTAGGGATTATTTTCTTGAGTT GTAAATATTGAACCAAAACCCATGTCATATAGACTTGATGGGTGTATTCTGTAGTAGGGATGACGATGATATCATAGTAC ACTGCTCAAATAATACTTTTAGTGCTCATACTATACATAATTGGTACCTAACTGGCTATTTAGCCATCTTCAAATTCATT ATATGCATTTTAGTGAAATGCAATTTGTTTATTTCTAATAAGTCTTTTTCCTAAATTTTTGAAATAAACTATTTTAATAC TATAATTAACCATGGTAAATAATTTAAATAAAGAACATTGCTTTTCAGAAGAACATATAACAAACTCCATAGTATTTTTT TTTTGATAAGCATATAAACTCCATAGTACTTGAACTTGAAATAAACAATGATGGATGGTAATGGATAGGGTTTAAGTATG GTATAATTGTATTTATATACCCCACATTTACATTTAACAAAATACCTATACCTAAACCC
CDS sequence (LotjaGi5g1v0323000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCACTTCTTCTCTCTTATCGTCACTCTCTTCCCCCTTCATCCACGATTCTGCACCTGCTCGCCATGGAACGAAGCT CCTTCCTTCTCCTCACTCCATCACCACGCGATGCTCCAAGTATTTTTCTGCTAAGTGCTCCCTCGACCACATCCCCAAGC AGTTCCGGCAGGAAAATCTCAAAGATGGATTGATGGACAACTTCAAGAATGCACCTAAATTTTTATATGGCCTTTCTCCA TCACAAATGGACATGTTCATGACCGAAGATAATCCTGCCAGCAAGCAGGCTGAAAGAGTTACAGAGGATAGCATCTCATC TGCCAAGAATTATTTGGATCATGGTGGAATGTGGAGTATGTCTAGCTCGGACAATAATGGCCCTGCAAAATACAGCATGA GTGTTAGTATGTATCGAGGAGGAGGTAGGGGAGGCGGAAGGCCTAGAACTGCTCCCCCGGACCTGCCTTCTCTGCTTTTG GATGCTCGAATATGCTATCTCGGTATGCCGATTGTTCCAGCTGTCACAGAACTTCTTGTTGCTCAATTTATGTGGTTGGA TTATGATAACCCTACCAAACCTATTTACTTATATATTAATTCATCTGGAACCCAAAATGAGAAGAATGAGACCGTGGGAT CAGAAACTGAAGCCTACTCTATTGCGGATATGATGTCTTATGTCAAAGCTGATGTCTATACTGTGAATTGTGGCATGGCA TATGGCCAAGCAGCAATGCTTCTCTCACTTGGAGCAAAGGGTTATCGCGCTCTACAGCCAAATTCATCCACAAAATTATA TCTTCCAAAAGTTAACAGATCAAGTGGTGCTGCTATAGACATGTGGATTAAGGCAAAAGAGTTGGAAGCGAATTCTGATT ATTACATTGAGCTGTTGGCGAAAGGAATTGGGAAATCAAAGGAAGAAGTTGCTAAAGATGTCCAGAGGCCTAGATATTTT CAACCAAAGGAAGCCATAGAGTACGGAATCGCTGACAAAATAATTGATTCTCAGGATGCTGCATTTGAGAAGCGGAATTA TGATGAAATGCTTGCTCAATCAAGAGCTATGAGGAAACAAGCTGGTGGCAATCCTCAAGCAGCTCCTTCAGGATTTAGGT AA
Protein sequence (LotjaGi5g1v0323000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTSSLLSSLSSPFIHDSAPARHGTKLLPSPHSITTRCSKYFSAKCSLDHIPKQFRQENLKDGLMDNFKNAPKFLYGLSP SQMDMFMTEDNPASKQAERVTEDSISSAKNYLDHGGMWSMSSSDNNGPAKYSMSVSMYRGGGRGGGRPRTAPPDLPSLLL DARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSSGTQNEKNETVGSETEAYSIADMMSYVKADVYTVNCGMA YGQAAMLLSLGAKGYRALQPNSSTKLYLPKVNRSSGAAIDMWIKAKELEANSDYYIELLAKGIGKSKEEVAKDVQRPRYF QPKEAIEYGIADKIIDSQDAAFEKRNYDEMLAQSRAMRKQAGGNPQAAPSGFR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 27 | 373 | 347 | 6.4E-177 | – | |
| PANTHER | 27 | 373 | 347 | 6.4E-177 | ||
| Gene3D | 145 | 342 | 198 | 5.1E-50 | – | |
| SUPERFAMILY | 150 | 340 | 191 | 7.81E-41 | ||
| CDD | 154 | 334 | 181 | 4.96057E-71 | ||
| PRINTS | 154 | 169 | 16 | 8.4E-12 | ||
| Pfam | 156 | 337 | 182 | 2.0E-35 | ||
| PRINTS | 194 | 214 | 21 | 8.4E-12 | ||
| PRINTS | 234 | 251 | 18 | 8.4E-12 | ||
| PRINTS | 313 | 332 | 20 | 8.4E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi5g1v0323000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…