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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001907
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We have found 31 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.873s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v3244500.2
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic-like [Glycine max] gi|356499630|ref|XP_003518640.1| chr1 36675368 36679932 -
3 domain predictions
2 GO terms
Lj1g3v4919820.1
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-like [Glycine max] gi|356572984|ref|XP_003554645.1| chr1 59730156 59734140 -
2 domain predictions
2 GO terms
Lj2g3v1549610.1
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Glycine max] gi|356531505|ref|XP_003534318.1| chr2 24349790 24354648 -
2 domain predictions
2 GO terms
Lj2g3v1549620.1
n.a. ATP-dependent Clp protease proteolytic subunit [Medicago truncatula] gi|357484629|ref|XP_003612602.1| chr2 24350516 24354680 -
2 domain predictions
2 GO terms
Lj3g3v3338450.1
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic-like [Glycine max] gi|356538797|ref|XP_003537887.1| chr3 40995809 41005430 -
3 domain predictions
2 GO terms
Lj3g3v3338450.2
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic-like [Glycine max] gi|356538797|ref|XP_003537887.1| chr3 41001184 41004032 -
3 domain predictions
2 GO terms
Lj3g3v3513730.1
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit 2, mitochondrial-like [Vitis vinifera] gi|225423749|ref|XP_002277069.1| chr3 42855662 42857660 -
2 domain predictions
2 GO terms
Lj3g3v3513740.1
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit 2, mitochondrial-like isoform 1 [Glycine max] gi|356538559|ref|XP_003537770.1| chr3 42856062 42857660 -
3 domain predictions
2 GO terms
Lj3g3v3523880.1
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit 2, mitochondrial-like isoform 1 [Glycine max] gi|356538559|ref|XP_003537770.1| chr3 42935422 42936798 -
2 domain predictions
2 GO terms
Lj4g3v1213500.1
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like [Glycine max] gi|356563393|ref|XP_003549948.1| chr4 18006720 18013397 +
2 domain predictions
2 GO terms
Lj4g3v1291650.1
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic-like [Glycine max] gi|356514168|ref|XP_003525778.1| chr4 19117587 19121811 +
3 domain predictions
2 GO terms
Lj5g3v1598380.1
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit 5, chloroplastic-like isoform 1 [Glycine max] gi|356534756|ref|XP_003535918.1| chr5 22969271 22972862 +
2 domain predictions
2 GO terms
Lj5g3v2099600.1
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic-like [Glycine max] gi|356575728|ref|XP_003555989.1| chr5 30080512 30084697 -
2 domain predictions
2 GO terms
Ljchlorog3v0010710.1
n.a. ATP-dependent Clp protease proteolytic subunit [Lotus japonicus] gi|13518463|ref|NP_084822.1| chloro 67734 69572 -
2 domain predictions
2 GO terms
LotjaGi1g1v0544300.1
n.a. ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G66670.1 CLP protease proteolytic subunit 3; Swiss-Prot: sp|Q9SXJ6|CLPP3_ARATH ATP-dependent Clp protease proteolytic subunit 3, chloroplastic; TrEMBL-Plants: tr|I3S6Z8|I3S6Z8_LOTJA ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi1g1v0544300 LjG1.1_chr1 107394214 107399679 -
4 domain predictions
2 GO terms
LotjaGi1g1v0770700.1
n.a. ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G09130.1 ATP-dependent caseinolytic (Clp) protease/crotonase family protein; Swiss-Prot: sp|Q8L770|CLPR3_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic; TrEMBL-Plants: tr|I1NBX9|I1NBX9_SOYBN ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi1g1v0770700 LjG1.1_chr1 134285132 134289412 -
3 domain predictions
2 GO terms
LotjaGi1g1v0770700.2
n.a. ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G09130.1 ATP-dependent caseinolytic (Clp) protease/crotonase family protein; Swiss-Prot: sp|Q8L770|CLPR3_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic; TrEMBL-Plants: tr|I1NBX9|I1NBX9_SOYBN ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi1g1v0770700 LjG1.1_chr1 134285971 134289203 -
3 domain predictions
2 GO terms
LotjaGi2g1v0343400.1
n.a. ATP-dependent Clp protease proteolytic subunit; TAIR: AT5G45390.1 CLP protease P4; Swiss-Prot: sp|Q94B60|CLPP4_ARATH ATP-dependent Clp protease proteolytic subunit 4, chloroplastic; TrEMBL-Plants: tr|I3RZX6|I3RZX6_LOTJA ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi2g1v0343400 LjG1.1_chr2 82074441 82085023 -
4 domain predictions
2 GO terms
LotjaGi3g1v0506800.1
n.a. ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G11750.1 CLP protease proteolytic subunit 6; Swiss-Prot: sp|Q9SAA2|CLPP6_ARATH ATP-dependent Clp protease proteolytic subunit 6, chloroplastic; TrEMBL-Plants: tr|I3SZ96|I3SZ96_LOTJA ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi3g1v0506800 LjG1.1_chr3 92402463 92412426 -
4 domain predictions
2 GO terms
LotjaGi3g1v0506800.2
n.a. ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G11750.1 CLP protease proteolytic subunit 6; Swiss-Prot: sp|Q9SAA2|CLPP6_ARATH ATP-dependent Clp protease proteolytic subunit 6, chloroplastic; TrEMBL-Plants: tr|I3SZ96|I3SZ96_LOTJA ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi3g1v0506800 LjG1.1_chr3 92402466 92412426 -
4 domain predictions
2 GO terms
LotjaGi3g1v0506800.3
n.a. ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G11750.1 CLP protease proteolytic subunit 6; Swiss-Prot: sp|Q9SAA2|CLPP6_ARATH ATP-dependent Clp protease proteolytic subunit 6, chloroplastic; TrEMBL-Plants: tr|I3SZ96|I3SZ96_LOTJA ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi3g1v0506800 LjG1.1_chr3 92403605 92412391 -
4 domain predictions
2 GO terms
LotjaGi3g1v0529000.1
n.a. ATP-dependent Clp protease proteolytic subunit; TAIR: AT5G23140.1 nuclear-encoded CLP protease P7; Swiss-Prot: sp|Q9FN42|CLPP2_ARATH ATP-dependent Clp protease proteolytic subunit 2, mitochondrial; TrEMBL-Plants: tr|I3SVH6|I3SVH6_LOTJA ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi3g1v0529000 LjG1.1_chr3 94572234 94574779 -
4 domain predictions
2 GO terms
LotjaGi4g1v0195800.1
n.a. ATP-dependent Clp protease proteolytic subunit; TAIR: AT4G17040.1 CLP protease R subunit 4; Swiss-Prot: sp|Q8LB10|CLPR4_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic; TrEMBL-Plants: tr|V7CEM3|V7CEM3_PHAVU ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi4g1v0195800 LjG1.1_chr4 45033426 45040857 +
3 domain predictions
2 GO terms
LotjaGi4g1v0212300.1
n.a. ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G12410.1 CLP protease proteolytic subunit 2; Swiss-Prot: sp|Q9XJ36|CLPR2_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic; TrEMBL-Plants: tr|I1K0I6|I1K0I6_SOYBN ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi4g1v0212300 LjG1.1_chr4 49438000 49442756 -
4 domain predictions
2 GO terms
LotjaGi4g1v0212300.2
n.a. ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G12410.1 CLP protease proteolytic subunit 2; Swiss-Prot: sp|Q9XJ36|CLPR2_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic; TrEMBL-Plants: tr|A0A1J7I6X0|A0A1J7I6X0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0212300 LjG1.1_chr4 49438577 49440857 -
3 domain predictions
2 GO terms
LotjaGi4g1v0212300.3
n.a. ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G12410.1 CLP protease proteolytic subunit 2; Swiss-Prot: sp|Q9XJ36|CLPR2_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic; TrEMBL-Plants: tr|A0A1J7I6X0|A0A1J7I6X0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0212300 LjG1.1_chr4 49438577 49441678 -
4 domain predictions
2 GO terms
LotjaGi4g1v0212300.4
n.a. ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G12410.1 CLP protease proteolytic subunit 2; Swiss-Prot: sp|Q9XJ36|CLPR2_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic; TrEMBL-Plants: tr|A0A1J7I6X0|A0A1J7I6X0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0212300 LjG1.1_chr4 49438577 49441678 -
4 domain predictions
2 GO terms
LotjaGi5g1v0243900.1
n.a. ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G02560.1 nuclear encoded CLP protease 5; Swiss-Prot: sp|Q9S834|CLPP5_ARATH ATP-dependent Clp protease proteolytic subunit 5, chloroplastic; TrEMBL-Plants: tr|V7BH24|V7BH24_PHAVU ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi5g1v0243900 LjG1.1_chr5 55247763 55252169 +
4 domain predictions
2 GO terms
LotjaGi5g1v0243900.2
n.a. ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G02560.1 nuclear encoded CLP protease 5; Swiss-Prot: sp|Q9S834|CLPP5_ARATH ATP-dependent Clp protease proteolytic subunit 5, chloroplastic; TrEMBL-Plants: tr|A0A1J7H2S4|A0A1J7H2S4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0243900 LjG1.1_chr5 55248421 55251303 +
4 domain predictions
2 GO terms
LotjaGi5g1v0243900.3
n.a. ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G02560.1 nuclear encoded CLP protease 5; Swiss-Prot: sp|Q9S834|CLPP5_ARATH ATP-dependent Clp protease proteolytic subunit 5, chloroplastic; TrEMBL-Plants: tr|A0A151RYF7|A0A151RYF7_CAJCA ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi5g1v0243900 LjG1.1_chr5 55250406 55251303 +
3 domain predictions
2 GO terms
LotjaGi5g1v0323000.1
n.a. ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G49970.1 CLP protease proteolytic subunit 1; Swiss-Prot: sp|Q9XJ35|CLPR1_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic; TrEMBL-Plants: tr|A0A0B2SC32|A0A0B2SC32_GLYSO ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi5g1v0323000 LjG1.1_chr5 64141810 64146428 -
3 domain predictions
2 GO terms