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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0323800 |
| Transcript ID | LotjaGi5g1v0323800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein; TAIR: AT4G33905.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein; Swiss-Prot: sp|Q54FR4|PX24D_DICDI PXMP2/4 family protein 4; TrEMBL-Plants: tr|I1LEF9|I1LEF9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0323800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64222092..64225659) extracted from Lotus japonicus Gifu genome v1.2.
AAATAATTTATGTGGGAAAGAACAAAGACATTGAGGTTTAAGAAGCGAATTGCAGAACTGGGTTTAAAGCCGCACCTGCA ATTTCTGTCTGCAGTTTGCACCGCCAATTCCCATGAACCAGGAACTCCGACACTTGACATAAAGCTGCAAACTCGTGTTC TTTGAGGTTACCCCTAACAAAATGGGTAGTTCTTTTCTTAAGAATCCCATCAAGTTTTCCCATGTCATGAACCGTGTCAT TGATCCTTACAAAGTGCAGTCTAAACCTTACTTTCGATTACCGCATTTCCTGAGGAAGCCTAGAGAATATCAAGTGTCAT CACCGTCTTTGTTCACTTCTTCGTTTTCTTCTTCTTCTTCAACCACCGCCGCCGCCTCCGCCTCCAAGGTTGGTTTTGTA GGTTGGTATTTGGGAATGATCAAAGCCCGGCCCATTCTCACCAAAAGTGTTACTTCTGCACTTATTTACACTGCTGCTGA TTTATCCTCCCAGGTAATCCCCTAGTGTCATTTTTATCCTATCTGTTTTGTTTGCTTATTTTTCATGGACATGTGAGTTT TTTATTTATGAAGATTGGTAATTTTTGTAAAGGAATGGAAAGTGCATTAGTTTCAGCTGAGAAGGAAAAGTTGAGTTTGA GGTCATAGTGTAGTTGTTGAATTAATTGGCTTATGTTTCTTGTAAAACAACTAGGGTTTAATATTTGATTTCTAAGAATG CCTTGTCTGATGTTGTTTAGCGCGTATGAAATTGAATTCGACTCAACTGCAATAGATTATCTTGTTAATATGGGAACTTA ATGCTAATCCTTGGTTGTGGAACTATGATTCTGAGAGTTCCTGATTCCCTTGCCTTTTCTTCATTAGCTCCTGTTAGAGT ATCTGTCACTGTTTATTTATTTATTTTATTTTTTATAAGATGCATGGTTCTGCTCACTTGTGAATGTTTCATTAGCTGTG GCATGGAACTCTAGGGAAAGTAAAAATTGTAATAGTCTGGTGTAAGGTAGTAGCATCAATTGTGGAAATGGAGATCCAGC TAGGAATTTTAGAGGGGATGATAGTGGAAGAGCTACTTTTATGCAAGCATAGACTTAACACATCACTCTTAGATGTAACT TGTTAAAAAAATTTACAACACTTTTGATTCGACAAACAAACTTATGTGAAGGATTTGCAGCACAAACAAACTTATGTGAA GACCAAAAACTAAAACTTTTCAGAGTTAGATAGCAAAACCAACTGTCCAATATGTGTATCACAGGAAAGAAAAGGAAATC TGTGTATAAAGCTGAAGTAAGGAAATGACAATCACCTTTTGAGTTTCACAACAGTGGTTATGGTTTGTTGTAAGGTTAGA GCATAGGAAAAGAAGAGAATGGAACTGAAGATCAAAGGTTTTTGGTGAATGCTTGAAACAAATAAGTTTTCTGATTTCAC CTAGTAACACATTGGTTTTGGAGAACCTTGGCCTTTTCTTTTTACTTTTGAGAGAGGTCCTTATTTTTTTTGGCGTGTTG TCACTTATTTTACCCTAGTATCATATCATTCACATTCATGATAACGTTTTGTTGATTTTCCATGTTTACTCTTGCCTGGC CTTTGGTATATTGCACAATCACTAATCCATTGTTTGGTTTAGGTGAGAAAAGTGACACGAGCAAAAATTCTTGTGAAGCC TGTGCCGAAAGTTTTGTTTCTGATTAAAAGAAAACAGTGAGGGAATAGGAAAAATTGATGCATTTGCCCTTATTTATAGT GATATTAGACTCTTATTCTAGGAAAATATGAAAAGCAATTAAGACTCCCAATCCTAATCAAATAAAGAAACAAATCAATG TAAAGAAGAAAATGGAGAAACTGATACTTAAGAATCATGTAAATTACCTTGGAGTAACCAATTATCTAAGGTTATTGTCT GTCACCTGTATTTTGTTAGACACTGTAATTTGTATGTTAGGTGGAGGTCATAATTTGAAGAAAAAAACATTAATCATGAA GAGACAGGAAAAAAAAATATTGCATAGTAAGATTTATTTGTTCAGCCTTGTTTTGATTTTTCTTTCCAGTGCTTCATTGC TGCTGTATGGTTTGAATGTCCCAGTGGCATAATATCTTGAAAGTGCATGCATTTTTTTGCAATATGGTAGTCTTGCTACT CACTTTAACCTTCTGAAAGTTATATGGGTAACCTTTTTGAGGAGCCTTAAGGTTGTCTTGCACTGAAATTCCTCCAATAC TGATATTGGTTCATGTTCTTTTGCATACTTGAGGCCTTCTCGGGTCATATAAATGTTACCAACCCATTACGTGGCTTCAC ATGGTTATATATTGCATACTTGACGCTCATTTTGTTGTCTTTTCATGGTATTTAATATTTAATTCTTTTAGGCTATTGTG CGGCAATCTTCAGAACCTTTTGATTTCGTAAGAACTTTACGCATGGCGGGATATGGGATGATCATCTTAGGACCAACACT GCATTTCTGGTTCAATTTCATGTCAAAGCTTTTCCCAAGGACGGATCTTTTCTCTACATTGATGAAAATGGTCATGGGTC AGACACTTTATGGACCTGCCATGACTGTTATTTTCTTCTCATTTAATGCGCATTTGCAGGGTATGTCTAATTCTCATAGC ATAATATTTGTAATGCAATTCCTTTTTATATATTGTATATGGATTTCCTTGGCTTACCTTATTTTCTGGGAGGATTTTTT TCTTGATATTATTATCCTTCCATTTTTCTTGTTCAACATTTCGTTTTTCTATTCTTAGTGAACAAAATCTTTCTGCTACA CATACATGACATATTTTATCTTCTGTTCAATTCTTTCAAGTTATAATGTTCTAAACAGCTTTCCTTGGTTGCTAGGTGAA ACTGGCACGGAGATTGTAGCACGCTTAAAGCGGGATTTGCTTCCTACGTTTTTGAGTGGCGTTATGTACTGGCCTTTGTG TGATTTTATTACTTTCAGATTCATTCCTGTCCATTTACAGGTATGTGTTAATATCTTCTTACCTTTCTTTTCTTACTGCA TGCCATGCTTGCAGATTTGGATGATGCATGGTGTGTGCCACCATAAATAGCCACAAGTTTTCCATTCTATTTTTATGTTT TTAGGCTCTGGTTGTTAACTGATTATTTTCTACATTTGTTCATTTTGACAGCCATTAGTCAGCAATTCATTTTCATATTT GTGGACCATTTACATCACCTATATGGCAAGCCTAGAGAAAGCTGAGATAGCAGAGATAGCAGAGATAGCTAGCTGATCAT TCTCAAAGTAAACTGTGGTATACTATCAAATCTTTTGGTGTCCCCGGGAATTCTGATCTCGTTGTCCAAGGATATACTAC GAATTAGATTAATTGGTTTCATCCTGTTTAACAAATATTCCTCCTGATTTGTTTTGGTTGTATAACCTTTTTTCTTATAC AATTAGACCTATTTGTAGAACCTCTATAGTGTTGTTGTTAATGAATTTCCCCCCTTTTTCTGGAAGACATTTTCTATTAG TTCTTTCAAGAAGCCTTTCCTTCGCTTTATATTTTTACTCAATATCCG
CDS sequence (LotjaGi5g1v0323800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGTTCTTTTCTTAAGAATCCCATCAAGTTTTCCCATGTCATGAACCGTGTCATTGATCCTTACAAAGTGCAGTC TAAACCTTACTTTCGATTACCGCATTTCCTGAGGAAGCCTAGAGAATATCAAGTGTCATCACCGTCTTTGTTCACTTCTT CGTTTTCTTCTTCTTCTTCAACCACCGCCGCCGCCTCCGCCTCCAAGGTTGGTTTTGTAGGTTGGTATTTGGGAATGATC AAAGCCCGGCCCATTCTCACCAAAAGTGTTACTTCTGCACTTATTTACACTGCTGCTGATTTATCCTCCCAGGCTATTGT GCGGCAATCTTCAGAACCTTTTGATTTCGTAAGAACTTTACGCATGGCGGGATATGGGATGATCATCTTAGGACCAACAC TGCATTTCTGGTTCAATTTCATGTCAAAGCTTTTCCCAAGGACGGATCTTTTCTCTACATTGATGAAAATGGTCATGGGT CAGACACTTTATGGACCTGCCATGACTGTTATTTTCTTCTCATTTAATGCGCATTTGCAGGGTGAAACTGGCACGGAGAT TGTAGCACGCTTAAAGCGGGATTTGCTTCCTACGTTTTTGAGTGGCGTTATGTACTGGCCTTTGTGTGATTTTATTACTT TCAGATTCATTCCTGTCCATTTACAGCCATTAGTCAGCAATTCATTTTCATATTTGTGGACCATTTACATCACCTATATG GCAAGCCTAGAGAAAGCTGAGATAGCAGAGATAGCAGAGATAGCTAGCTGA
Protein sequence (LotjaGi5g1v0323800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSSFLKNPIKFSHVMNRVIDPYKVQSKPYFRLPHFLRKPREYQVSSPSLFTSSFSSSSSTTAAASASKVGFVGWYLGMI KARPILTKSVTSALIYTAADLSSQAIVRQSSEPFDFVRTLRMAGYGMIILGPTLHFWFNFMSKLFPRTDLFSTLMKMVMG QTLYGPAMTVIFFSFNAHLQGETGTEIVARLKRDLLPTFLSGVMYWPLCDFITFRFIPVHLQPLVSNSFSYLWTIYITYM ASLEKAEIAEIAEIAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 118 | 118 | - | – | |
| PANTHER | 22 | 250 | 229 | 4.0E-113 | – | |
| PANTHER | 22 | 250 | 229 | 4.0E-113 | ||
| Phobius | 119 | 138 | 20 | - | – | |
| Phobius | 139 | 157 | 19 | - | – | |
| Phobius | 158 | 175 | 18 | - | – | |
| Phobius | 176 | 194 | 19 | - | – | |
| Pfam | 179 | 237 | 59 | 1.4E-16 | ||
| Phobius | 195 | 217 | 23 | - | – | |
| Phobius | 218 | 256 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi5g1v0323800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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