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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0324700 |
| Transcript ID | LotjaGi5g1v0324700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT1G49850.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q852U6|RHY1A_ARATH Probable E3 ubiquitin-protein ligase RHY1A; TrEMBL-Plants: tr|Q8LJR8|Q8LJR8_SOYBN RING-H2 finger protein; Found in the gene: LotjaGi5g1v0324700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64268264..64271089) extracted from Lotus japonicus Gifu genome v1.2.
GGGGGTTCGAACCTACAATGTGTCAAATACAAGACTCTCTCTGTCATGCTATACTAAATCAATCGTCGGAGTTAAAGAGT TATAGGTTGTGGGGGCACATATGTACATTAGCAAATATCTAGATTAGGACAAGCTTATCTTTTTCTTACATGACATCACA GTCAAGAGCTTTATTTGAACCTTCCAAGAAAGGAAAGGGGTTCAATCGGGGAAGGTGAGAGGAATCATCATAGGACGCAG TTACTGTCTGGTTTCGCTATTTCACTCTCTTCCGCTACCGTCGATCCACCGCGTCCTTCCTCCTTCCTTCACCGCGCGTG TGTGCATGACGAGCGCTTCTGAGCTATTCCACATCAGACGGAATCGATTCGGAGCACGAACTACTGCTCTCGATCTAGCC TTCGATTCCTCCCCTTCAGCTCCACATCACCGCTTTCACGACCCCGACGCCGCCGCAGCAGCAGCTTCCCTCCGTCTCCG CCGCCGCCGCCACCACCCGGTATTTCCTTTTTCTGAAGATTTGTGTGAATATATAGTAATGTTCATTGAATTGTTTGTTT GTTTGAATTGATTGAAAGTTAATTGATACATTGAGGTTCTGAGTGAGTGTTATGTTGTGATTGATTAAGTAACTGATAGA GTTTTTGTGCTGTGCTTGTTAGGAGCGTTATGCAACTGATAGAATTCATGGGGTTGGGAGGCATCGCCGCTCTGCTAGTG CTATACATGATAGAACCGTTGATTCTGCAGAAAATGTCATGAGAGGCACTGATAGATTACCAGATGGTGTGTTACTTGCA CGGGCAAGGCTCCTGCAAAGGTTGAGAGGGGAGCCTCTCTCTAGAACCAGGTTTGATTTCTCCTTTTTTAGTGTTAATTG CAGTTTCATCTTGTTAACTATGCATGCGAGATTGAGGAGGATTGTTAAATTGCTTTGATGTGTGACAATGATGAATAATG TTGATGTATTTGTAAAATTGGTATTCTATTAGGGTGGTGAGTTGGAGCTGGAAATGGTCACACATGAAATCAGTTATTAT AGTTGCAGAACCGTTACAGAGCAAATTTATTTAGTTTTTCATAGCTGACTGCATTTCTCTAACTATGTGGAAAGCTATCT ATGCACATTATTTTGATATTGCACCCTCCGAAGGAAATATATACATATGGGTTTGTTGGGAGGAGAAAGTTTTCATTTTA AATAAACTTTCCTCTGATTTGAAAACTTTTAGGAAAATGGGATTTTACCATGTAACCAGCCTTCTATCCACCCTTTATGC ATAATGGATGACATAATATTACTTTGTTCTTAGTCATGATCCTACTTGTATAACTCATCCTTAGTTAAGTGAGTTCTTTT TATCATTTTGTCACTAAGATCATGGTAAATTTTATGTTGAGATGCCTGTCTTTTAAATACAATATCTGATTATCTAGTTC TGATAGATAACATGTTCACATCCCTCATAAGGAACAATTATCCAAACTTTTGATAAGTATGGCTATTCTATGAATGTGGT ATACTTAAAAAAAAAAATTCTCTTTAGTAAATCATTTCATGGTATGTTTTGCCATTCAAGTGATGTAAATTATATCTGCC GTACTTATTTTGTTGAGTTTCTCATAGCACATACTTGTTTTATGAGATGCCTCTCTGGCATCTTTAATGGCTTGTTGTAT TGAATTACTTGATGTGAAGTCTAAGTTGTTTGTATATCCTTGATTATTACTAGGAAGAAGTCCACTTTGAATCTGTTATT GATTTATCTTCTGAATCAGTCATTTACGCATGAAGATCTGCCATTGCTCTTTGATTCAATCTGAAGGCTTTTCTTTTTGC TGGTTTCCTCAGGCAATATGGTTCAGATTCAATGGATGAGGATCAAGAAAGTGAATTATCAAGTGATGTTCCAACAGGGG CCTCTCTGGTGACTGACTTGACTTCTCAAATGGAAAGGTCCCAGCTCTTGCTAGACCTAAACAACAAGCCACCTGGACTC ACTCAGGAGGATGTGAACTGTTTGCATCTGGAAGTTTTCAGGATCAGTGAGACAGGATTAGAATCCAGGGTGCAGGATTG TTCCATATGCTTGGAGTCTTTCACGGATGGAGATGAGCTGATACGCTTGCCATGTGGACATAAATTTCACTCTGCTTGTC TGGATCCTTGGATTCGCTGTTGTGGAGACTGTCCATACTGCCGGCGATGTATAGTTGTAAATAGTCACCTTGAAGAAAAT GAGGCTGAGTAGTTTATAAATTATATTGATTTTCTTGTATTCTGTTGTATAAAAAGATGCTGTAGGAGAGCTGGCCTTTT TGAAGTTATGTAGTGTTCCATCTTGAATATATGCACATTTTTCTTGCTTTCACCTCCATATACCTAATACAGATTTTGTT AGCATATGCTGTAGTCAGAGTCAGAGGCAATATTGGACCTACCTTATTCCAGAGGAGAGGACGGCAGTGGGTAGAAAATT TGAAGAAAGGGCATGTTCCCCATCTATGATAGGATATGTGGTTGGTAATATAAGGCTTAGATAAAATTTTACCTTATGGT TATATTGTATTAGAATTTTAGTTTTTATGTGATGATACGTTGTATGATTTATATTAGTACATTTCTTTTTAACATAAACA CCTTTATAAGTATGTTATATTCATGTAATTTTTTGGTGTTGTACAAATTTGCAAGAAATAGAAATTTATATAGATTTAAA TTATGTATGAATATGCTTGGCTAAGATGGGAGCTTCTTCTGCAAGCACGTTTACAATGTAACCTGCACCTTCTGATCGTG TGAAGGTGTTTTTAACTGCTGATTAC
CDS sequence (LotjaGi5g1v0324700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGAGCGCTTCTGAGCTATTCCACATCAGACGGAATCGATTCGGAGCACGAACTACTGCTCTCGATCTAGCCTTCGA TTCCTCCCCTTCAGCTCCACATCACCGCTTTCACGACCCCGACGCCGCCGCAGCAGCAGCTTCCCTCCGTCTCCGCCGCC GCCGCCACCACCCGGAGCGTTATGCAACTGATAGAATTCATGGGGTTGGGAGGCATCGCCGCTCTGCTAGTGCTATACAT GATAGAACCGTTGATTCTGCAGAAAATGTCATGAGAGGCACTGATAGATTACCAGATGGTGTGTTACTTGCACGGGCAAG GCTCCTGCAAAGGTTGAGAGGGGAGCCTCTCTCTAGAACCAGGCAATATGGTTCAGATTCAATGGATGAGGATCAAGAAA GTGAATTATCAAGTGATGTTCCAACAGGGGCCTCTCTGGTGACTGACTTGACTTCTCAAATGGAAAGGTCCCAGCTCTTG CTAGACCTAAACAACAAGCCACCTGGACTCACTCAGGAGGATGTGAACTGTTTGCATCTGGAAGTTTTCAGGATCAGTGA GACAGGATTAGAATCCAGGGTGCAGGATTGTTCCATATGCTTGGAGTCTTTCACGGATGGAGATGAGCTGATACGCTTGC CATGTGGACATAAATTTCACTCTGCTTGTCTGGATCCTTGGATTCGCTGTTGTGGAGACTGTCCATACTGCCGGCGATGT ATAGTTGTAAATAGTCACCTTGAAGAAAATGAGGCTGAGTAG
Protein sequence (LotjaGi5g1v0324700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSASELFHIRRNRFGARTTALDLAFDSSPSAPHHRFHDPDAAAAAASLRLRRRRHHPERYATDRIHGVGRHRRSASAIH DRTVDSAENVMRGTDRLPDGVLLARARLLQRLRGEPLSRTRQYGSDSMDEDQESELSSDVPTGASLVTDLTSQMERSQLL LDLNNKPPGLTQEDVNCLHLEVFRISETGLESRVQDCSICLESFTDGDELIRLPCGHKFHSACLDPWIRCCGDCPYCRRC IVVNSHLEENEAE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 39 | 242 | 204 | 1.0E-30 | – | |
| MobiDBLite | 117 | 143 | 27 | - | – | |
| Gene3D | 161 | 242 | 82 | 1.1E-17 | ||
| CDD | 196 | 238 | 43 | 2.04803E-18 | – | |
| SUPERFAMILY | 196 | 244 | 49 | 1.72E-19 | – | |
| Pfam | 196 | 238 | 43 | 1.1E-12 | ||
| ProSiteProfiles | 197 | 238 | 42 | 12.77 | ||
| SMART | 197 | 237 | 41 | 3.0E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0324700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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