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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0325100 |
| Transcript ID | LotjaGi5g1v0325100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD40 repeat-containing protein; TAIR: AT4G34280.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q92466|DDB2_HUMAN DNA damage-binding protein 2; TrEMBL-Plants: tr|V7BB13|V7BB13_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0325100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64298640..64304910) extracted from Lotus japonicus Gifu genome v1.2.
GAAACCAGAAGAAAAAAAAAATAATCAGGTGGCAGTAAGAAAAACTAAAAAAAAAAAAAAAAAAAAAAAAAACCGAAAGA GAGAGAGAGCAGTGTTTGAATCTAAACGTGTGCTTTGCATTGTGATCTTATCACTCTTTGGTTTGATAATTTACGTTTTC CGATTTGCTTCGTGAAATCGTTGATCGGAGAGTTTTTCCGATCGCCATGGCCGTCGACATTCAAACATTGGAAGACAGGT ACACTACTCCTTTTTTCCTCTTTTTCGAATTACATTTGCTTAGTTTCACTAATTCCTTCTTCATTTTCATTGAATTGGAC GTTGCTTCTTGTGATCGGGAACTTAATTGTATGATTATGGCAAAATTTTCAATGTTTGATTAAATTCGTTTTGATCAAGG GAAATAAGCTAGTTTATGCATGGGGGTTTCGTTTTGATCATTGTTGATACTGATAGTATTTGCGTTTTTCTGTATTTTTT ACTCCATTGATTCTAATAGTGTTTTTGGTTCTACTGTTGTTCTAGGTATATTGGTTTTTGCAGGAGTCATGGTGCTTCTC CTAGCCCTGCTATTTTGTCAAGCTTCTACAAGGTCCGTCCGTTGTTTTATTCCGTCGTCTCTGTTATATTCAAACATACC TATTTGCATTTGCGCGTGTTCTGCTAAATAGTGACAAGAGATTCATACTTACTTGAGTTCCATCAATTTTTAGTCTCAAC CAATTTGTATTTGTATTCCAATTTCCAAAGTGTACATGTTGTTCCCATGTATTTCATTTGTACTTTATATCCTTTTTATT AGTAAGAAGCTAAAGCTAATCATGATTGTGCAGGCTGAGGTCAAAAAATCCCGTCAAGAGCTGTGCGTCCTGGAAATTGT AATTGATGACATCTGTGATTTTGATTTTGCTCCACTTCTTGACACGTGCATGAACCTTGATGCTTCTGAAATAGAAGCTG TTGATGTACGTAATGAATCATCATGTCTATTAAATGGAGAATGTGCATTTTCATTGCTGCGTGCTATTAATCAAAAGCTT CGAGTAGTCGAACTGCAGGACGTGTCATTTGGAAATGACTTCTTACGGTATATTATAGTGCTTGTCCTGGATTATCTTTG TACAAATGATGATGTAATATCTGAATGTCCAATCACCTCTATCCCCACCTATTCAATTTTGAGATGGTAATATGGACTTT CTAGCCACTGGAATTCTGGCAATTCAGAATATTCAACAATCTTCATTTTACTGAATTTTGGAGATAGGTTTTTAAGCCAT TTGATAAAAACCTTCCCAAGATGTTTTTATATCGATGGGGCTGTGACATTATTGCATTGCTACTGGCTCTTTTGTCACTA AGCTTTGGTATTAACAGTTGCCAATTTACGTAATTTACTTGATGTGCTTCATTCTTTTCGATGATATCTTAGTCAGTTGG TTTAACTGTTTACCTGAAATTTTTAAACATGGGTGGATCATTCATTATTGGGAGAACATGCCTCGACAGAATCACTTTCT TGTGCATTAGGTTTGCATTGCTTATCTTTTTTTCATGACTAATGTTGGGTTTTAACATTAGGGATATCTCGCAAAGGGGT TTGGCATGCCAAGTGTTAACATTGAGGTCATCGCGTTTCCGGAAGCTGAACTTGATGGGCGAGTTCATGCACATGCACAC ACTTAATCTTGATTTCAGTTCTTCCCTCACTAGTTTTGATGAGGACTGTTTTAATTGCATGCCCAATCTAAGGTGTCTCT CAATGTGCGAAACACGGATTACAAATCTTTGGACAACTGTTGCAGCTCTATCTAAGCTCCCTTCTTTGGTTGAGCTAAGG TTTCAATATTGGCAGTATTGTAGTGATTCTGGGTCATCTTTTAACTTATCCAGTGGGAATTCAGATAGCACTGCTGATTT TAATCTGCTTGAAAGAGTTCCTTTTGTTGGTGAATTCTGCACCGATACAAGGGAACTGACAGATCCTAATGCTGAAGACC CACTGAGAAATTTTTACTCATTTGGTGAAGAAGCTATAGATCATGATATTCAAAGCATGGTTGAGGATTCATCAGATGAT AGTGAAATTGGTTGTACTAGGCATCATCATAGATCCTGGTTGTCAGATGTGTTTCCTGGATGGAATTTACAAGTGCCTCT TCAGAATGAGGTAGTCAACTTAACATTTTTTCTTCCTGCAAATAAATTTCCTCCTGAGTGGTATCAACTATCAATAACAA AACAACATTGGCAAATCTACATCTCTCTCTCTCTCTCTCGCTAAGATATTGTTCATTGTTGTAGTTTATTGTAAATAATA TACTTTTAATCCTTGAAAAGATATTAATTTGGATTCTAAAATAAGCTTGAATGTTTTAAGTTTAGACTTGGGATGGTATG GTGCCATCTTGCATCTTGTATTATTTTTTAAAATATTTAATTATGGTTATGACCATAGCATGGATGCTGAGGGGGTCTTG TTAATCATAAGTATTATTGCTGTTTGTTTTGCCTTTTTCCATTTTGTTCTTACTGTCGTGTTGCATTTTGGAAGTCTAAT AAATGGCATTTTGGAAGTCTAAACAAAAGTGAAATGCTTACTATTGAAATGCATATAAGTGACTCAGCTTATTGTATAAT TTCTTATGTCCACAGTATCCAAGTTCTAACTTCAAAATCCTCTTTGATCTTTAATTTTGGCAGTTCACATTACGGAATGA AGATGAAGAAGATTCATCACAAGGTTCTTTTACAGGCCATATTGCTGATGTTTCTATGAAGTATATGTCTCGTCATGCAT CACCAATATGTCATGAGAAACATTACAGAGAATTCATGATAGCTTCACTGCCAAATCTGAAAAATTTAGATAACGTGCCC ATCAGAAAAACTGACAAGGAAAGGGCTACTGGAATATTTTCTGAATACTTTGAATATCTTCCATACAGATGGAAGCACAA AGAGAGTGTTGTAAGTATCTTACAGAAACGAGAAATAAAATCAGGCCACATTAAGGTGCAATCTTCTAAGCGTAGCCCAC CGTATCCTTCCGGAAATTCCCAATATTTTTATACGAGGTCTCTTTCTGCTGCTAAATTGGGGTCTTCAACTTGGCCCTTT TTGCATCCCCTTTCTCTATTAGGATGTGATTTGGGTAAGGGTTTTCGTCCAAGGCAGTTTGAGTATCACCCATCTGACTC CAGCTTGATGGTCTTTGGAACTTTAGATGGTGAAGTAGTTGTGATCAATCATGAGAATGAACATATTGTGAGTTATATTC CATCACTTGGAGCAATGAATAGTGTCTTGGGTCTCTGTTGGCTCAAGAAATATCCCTCAAAGGTACGTTGCATGAAAAGA CATTCGGTATAAATGGCATTTACCATGGTTTCTATGTGGTGAATACTAGCTTCTAGATATTTTTTTTTGTAGTTATTGAA GTGATTGTCCTAGAATGCTTCATCAACTAACAGAATCTGTCACATAGCTTGGTAGGGTCCAAAGTAGTTTAATGAGAGAT GGCATTTTGTGATTTTCTCCAACAATGCTAGAACAACCTTGCCAGCCATAAGGATAATTAGTATTTTTACTGTTGTTAGT ATGGATATAAAGATTATATATTGAAGGAAGGCATCAGTTTTAGGAAGTATTTCATATTTCCATTCTGTATAGTTAGTTTT AGAGCATTTGTTCCTCCAGTTATATTAGTTTGAATGGCAATTTCTGATGCTGTTCTTTTTTCCTTGTTGCATGACACAGC TTATAGCAGGTTCAGACAATGGTTCCCTGAAATTGTATGATATCCACCAAGTTCCAAGAAAAATTACTAGCATATATGGG AATTCTGGTTGTGTTACCTTCGATGAATTTGACCAGTTGACATCAGTTCATGTTAATGCTACGGACGAACTATTTCTTGC AAGTGGTTACTCAAAAAATGTTGCGTTGTATGACATCAACAGTGGAAAGCGCTTGCAAGTGTTCACAGATATGCATCAAG GGCATATTAATGTAGTTAAGTTTGCAAATCATTCCCCATCAATTTTTGCCACTTCATCTTTTGATCAGGATGTCAAGATG TGGGACTTGAGACAGAAACCAATACACCCTTGCTTCACTGCTTCAAGCTCTAAAGGAAATGTGATGGTTTGCTTTTCTCC AGATGACCAATATATTCTTGCATCAGCAGTTGATAATGAGGTAACTTTTACTCAGTAGTGTGGTTAGTTACTCGTCACTG CATTCTTAGTGTAATTGCTAGAATAGGCTTTGCATATCATGAAATCTGCTTTAGCTTTTAAGCTATGAACGGTCTCCATT AGATTTTTGTTATCTATGTACAATAATTTGAATTAATTGCCTATATTCTTGTATTTCTTTTTGTTTGAACAACTTTATCT TGAATAAACATTTTTAGTATTCAGACTAATATTTAAACTTTAACAGGTTAGACAATTTCTGGCTGTTGATGGTAGGCTTC ACTTAGTTTTCGATATAGCTCCCACCGAGAGTTCTCAAAATTACACCCGTTCTTATTACATGAATGGGAGGGACTACATT ATAAGTGGGAGTTGTGATGAACACATCGTCCGTATTTGCTGTGCTCAAACAGGGAGGCGCCTGAGAGATATTTCCCTGGA GGTACATCATTCATATAATTTATGTACTTTACTGGCTGGGCCAGATTTGTGTAGTAAGTTATATAACGTGAGAGGGAGGG ATATGGAGAGAGACTGAGAAAGTAACAAATCTCCCAAAAGGGGGGCAGAGTAAATTCCGTATTCCATAGAAGTAATTTAT AACAGGGCTGCACCGCACCCTCTGTGAAGGCTGTCTGCAGTTTCCTGCCTTGCCTGTATGATTATATTTACTCATATTTT TCTATCAAACGAGTCATGTATCAAAATCCAGCATGGAGAGGAACACAAATGATTGATGTATGCTTATTATGCTTTCATGT CATGGAATCATTGATCCATTGTGTTAACATCAATTGTTTACTTGTATGCAGGGAAGAAGTTTAGGAAGTTCCATGTTTGT TCAATCTTTGAGGGGTGACCCTTTCCGGGTAAGTTATGTTCAGCTCTTTCTCTTGGTAAAAAAAAAAGGCCAACCCTAGA TAGCAGCCTAATAGGGAAGTGAACAATATGTTACTTTATAGGGTGGGATACTTGTACTTTGTAAATGTTTTTTGGAAGGC AGGAAATAGTTGCTTTATATTTTTTATCTCTACGAGTAAACACATTTCTTTAGCCTAATGTAATTCTTCTTCCCTTTACT ATGATTCTATGAACAAAATTTAGTACCACAACGCTTACTTAATTTGACTTCTTGTTTCTTTCGAATGTGTTGTATGCAGG ATTTCAACATGAGTGTGTTAGCAGCCTACATGCGGCCAGGCTCCAAGTCTGAAATTGTTAAGGTTTGTAACCTTTGTCCT TATATGCATATCATTCAAAAGCATCACAATCTTAATGGTATGTTAATTGCTGTGTTAGTTCTCTTTTACATGTCGTGTAG ATGCTAGCACTTAACTTTTCTTAGTAAAAGTAATAACAAAAAATTAATAAAAAAGGGTACGCTATTCATATTTTTGTTGA GTTTTGATTTATGTTTGTTTTTGCAGGTCAATTTACTAGCATCTAGTGGTGATGCAGAAGATGACTCTGATGACCAGCGC CCTTGCCTGTCCCACAGTATGGGAGCTTGATGTGCGACTTTGTATGTATTATTATGCAGAAGTGACTTTCAACTTGTGTT CTGTAGAATTATGATCACAATTTTGGTTAATAATTAGTTCAGCTGAGGTTAACCTTACTGGTAATGTAAATCCAATCCAA CTAGTGTAAAATAAAAGGCATCTCTGTAATGACTCAGAAGTTGCAGTGACCACAAACAGGTGTTTGTGAAACCTACTTTT GTATGGTAATATATGAGATGATATGATGAAGAAGCTGAATATGTGGTGTGGCTGTTATTTGTTTTAGCATGAAAAAATGG AGCTAAATTGACCATTATTTGTCTCTTAACTCCTAAAGCCTAAAGGAATCTCAGAGCCTGTTTCCATTCCATCTAAGATC ATAAAATTAAAATAGAAATAAATCACTTAATATACTTAATTTCAAAACAATCAAAATGTAAATGGCTTTATTTCATTGGT TGAGTTGAGAAGATGGTATTTACTACTTAGTCTTGTGACAAGAGGTGGAGCGAGGTAAAAAAGAACTTGAGAATATAGTT AAAAACGATCAATGTCTTATAATTAGAATTT
CDS sequence (LotjaGi5g1v0325100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGTCGACATTCAAACATTGGAAGACAGGTATATTGGTTTTTGCAGGAGTCATGGTGCTTCTCCTAGCCCTGCTAT TTTGTCAAGCTTCTACAAGGCTGAGGTCAAAAAATCCCGTCAAGAGCTGTGCGTCCTGGAAATTGTAATTGATGACATCT GTGATTTTGATTTTGCTCCACTTCTTGACACGTGCATGAACCTTGATGCTTCTGAAATAGAAGCTGTTGATGTACGTAAT GAATCATCATGTCTATTAAATGGAGAATGTGCATTTTCATTGCTGCGTGCTATTAATCAAAAGCTTCGAGTAGTCGAACT GCAGGACGTGTCATTTGGAAATGACTTCTTACGGGATATCTCGCAAAGGGGTTTGGCATGCCAAGTGTTAACATTGAGGT CATCGCGTTTCCGGAAGCTGAACTTGATGGGCGAGTTCATGCACATGCACACACTTAATCTTGATTTCAGTTCTTCCCTC ACTAGTTTTGATGAGGACTGTTTTAATTGCATGCCCAATCTAAGGTGTCTCTCAATGTGCGAAACACGGATTACAAATCT TTGGACAACTGTTGCAGCTCTATCTAAGCTCCCTTCTTTGGTTGAGCTAAGGTTTCAATATTGGCAGTATTGTAGTGATT CTGGGTCATCTTTTAACTTATCCAGTGGGAATTCAGATAGCACTGCTGATTTTAATCTGCTTGAAAGAGTTCCTTTTGTT GGTGAATTCTGCACCGATACAAGGGAACTGACAGATCCTAATGCTGAAGACCCACTGAGAAATTTTTACTCATTTGGTGA AGAAGCTATAGATCATGATATTCAAAGCATGGTTGAGGATTCATCAGATGATAGTGAAATTGGTTGTACTAGGCATCATC ATAGATCCTGGTTGTCAGATGTGTTTCCTGGATGGAATTTACAAGTGCCTCTTCAGAATGAGTTCACATTACGGAATGAA GATGAAGAAGATTCATCACAAGGTTCTTTTACAGGCCATATTGCTGATGTTTCTATGAAGTATATGTCTCGTCATGCATC ACCAATATGTCATGAGAAACATTACAGAGAATTCATGATAGCTTCACTGCCAAATCTGAAAAATTTAGATAACGTGCCCA TCAGAAAAACTGACAAGGAAAGGGCTACTGGAATATTTTCTGAATACTTTGAATATCTTCCATACAGATGGAAGCACAAA GAGAGTGTTGTAAGTATCTTACAGAAACGAGAAATAAAATCAGGCCACATTAAGGTGCAATCTTCTAAGCGTAGCCCACC GTATCCTTCCGGAAATTCCCAATATTTTTATACGAGGTCTCTTTCTGCTGCTAAATTGGGGTCTTCAACTTGGCCCTTTT TGCATCCCCTTTCTCTATTAGGATGTGATTTGGGTAAGGGTTTTCGTCCAAGGCAGTTTGAGTATCACCCATCTGACTCC AGCTTGATGGTCTTTGGAACTTTAGATGGTGAAGTAGTTGTGATCAATCATGAGAATGAACATATTGTGAGTTATATTCC ATCACTTGGAGCAATGAATAGTGTCTTGGGTCTCTGTTGGCTCAAGAAATATCCCTCAAAGCTTATAGCAGGTTCAGACA ATGGTTCCCTGAAATTGTATGATATCCACCAAGTTCCAAGAAAAATTACTAGCATATATGGGAATTCTGGTTGTGTTACC TTCGATGAATTTGACCAGTTGACATCAGTTCATGTTAATGCTACGGACGAACTATTTCTTGCAAGTGGTTACTCAAAAAA TGTTGCGTTGTATGACATCAACAGTGGAAAGCGCTTGCAAGTGTTCACAGATATGCATCAAGGGCATATTAATGTAGTTA AGTTTGCAAATCATTCCCCATCAATTTTTGCCACTTCATCTTTTGATCAGGATGTCAAGATGTGGGACTTGAGACAGAAA CCAATACACCCTTGCTTCACTGCTTCAAGCTCTAAAGGAAATGTGATGGTTTGCTTTTCTCCAGATGACCAATATATTCT TGCATCAGCAGTTGATAATGAGGTTAGACAATTTCTGGCTGTTGATGGTAGGCTTCACTTAGTTTTCGATATAGCTCCCA CCGAGAGTTCTCAAAATTACACCCGTTCTTATTACATGAATGGGAGGGACTACATTATAAGTGGGAGTTGTGATGAACAC ATCGTCCGTATTTGCTGTGCTCAAACAGGGAGGCGCCTGAGAGATATTTCCCTGGAGGGAAGAAGTTTAGGAAGTTCCAT GTTTGTTCAATCTTTGAGGGGTGACCCTTTCCGGGATTTCAACATGAGTGTGTTAGCAGCCTACATGCGGCCAGGCTCCA AGTCTGAAATTGTTAAGGTCAATTTACTAGCATCTAGTGGTGATGCAGAAGATGACTCTGATGACCAGCGCCCTTGCCTG TCCCACAGTATGGGAGCTTGA
Protein sequence (LotjaGi5g1v0325100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVDIQTLEDRYIGFCRSHGASPSPAILSSFYKAEVKKSRQELCVLEIVIDDICDFDFAPLLDTCMNLDASEIEAVDVRN ESSCLLNGECAFSLLRAINQKLRVVELQDVSFGNDFLRDISQRGLACQVLTLRSSRFRKLNLMGEFMHMHTLNLDFSSSL TSFDEDCFNCMPNLRCLSMCETRITNLWTTVAALSKLPSLVELRFQYWQYCSDSGSSFNLSSGNSDSTADFNLLERVPFV GEFCTDTRELTDPNAEDPLRNFYSFGEEAIDHDIQSMVEDSSDDSEIGCTRHHHRSWLSDVFPGWNLQVPLQNEFTLRNE DEEDSSQGSFTGHIADVSMKYMSRHASPICHEKHYREFMIASLPNLKNLDNVPIRKTDKERATGIFSEYFEYLPYRWKHK ESVVSILQKREIKSGHIKVQSSKRSPPYPSGNSQYFYTRSLSAAKLGSSTWPFLHPLSLLGCDLGKGFRPRQFEYHPSDS SLMVFGTLDGEVVVINHENEHIVSYIPSLGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIHQVPRKITSIYGNSGCVT FDEFDQLTSVHVNATDELFLASGYSKNVALYDINSGKRLQVFTDMHQGHINVVKFANHSPSIFATSSFDQDVKMWDLRQK PIHPCFTASSSKGNVMVCFSPDDQYILASAVDNEVRQFLAVDGRLHLVFDIAPTESSQNYTRSYYMNGRDYIISGSCDEH IVRICCAQTGRRLRDISLEGRSLGSSMFVQSLRGDPFRDFNMSVLAAYMRPGSKSEIVKVNLLASSGDAEDDSDDQRPCL SHSMGA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 806 | 806 | 0.0 | – | |
| PANTHER | 1 | 806 | 806 | 0.0 | – | |
| Gene3D | 93 | 230 | 138 | 2.7E-9 | ||
| SUPERFAMILY | 127 | 213 | 87 | 4.08E-7 | – | |
| SMART | 352 | 370 | 19 | 0.0028 | ||
| SUPERFAMILY | 467 | 736 | 270 | 1.37E-32 | ||
| Gene3D | 468 | 751 | 284 | 2.6E-45 | ||
| SMART | 499 | 541 | 43 | 1.6 | ||
| ProSiteProfiles | 508 | 688 | 181 | 13.237 | ||
| SMART | 545 | 592 | 48 | 38.0 | ||
| SMART | 595 | 636 | 42 | 5.5E-5 | ||
| ProSiteProfiles | 603 | 638 | 36 | 10.141 | ||
| SMART | 641 | 679 | 39 | 65.0 | ||
| MobiDBLite | 787 | 806 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0325100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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