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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0325400 |
| Transcript ID | LotjaGi5g1v0325400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G08820.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820; TrEMBL-Plants: tr|A0A0B2PGY0|A0A0B2PGY0_GLYSO Pentatricopeptide repeat-containing protein; Found in the gene: LotjaGi5g1v0325400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64309183..64311633) extracted from Lotus japonicus Gifu genome v1.2.
AGCAAAGAACCGAACCATGAACAATCCTAGCTGGGGGTGAAGAACCCAATTCCCGCTCTATTTATAAGGACTATGTTCCA TTGATAATTGTCGGACACCAAAGAGACATGCTTCCATTGTCTCTTCACTTCACCCAGAAGTTCAAACATTGCTATCTTCT TCCCTTTCGCTCTTCGTGTTCCATAGTTGATCACACTCCTACCACCTTCACAAACCTCTTACAGGGCCACATTCCGCGTT CTCATCTTCTCCAAATCCATGCACGCATTTTCCAACTCGGCGCACACCAAGACAATCTCCTCGCTACGCGCCTCATTGGC CACTACCCACCTCGCATTGCTCTCAGGGTCTTTCACTATCTACACAATCCAAACATCTTCCCTTTCAACGCCATCATCAG AGTCCTCGCTGAACAGGGTCACGTTTCCCATGTCTTCTCACTGTTCAACGATTTGAAGCACCGTGTACTTGCACCCAATG ACTTCACCTTCTCTTTTCTCCTTAAGGTTTGCTTTCGGTCCAAAGATGCTCGTTGTGCTGAACAGGTTCATGCCCACATT CAGAAGATGGGTTATCTCAATGACCCTTCTGTTAGTAATGGGTTGGTTGCAGTGTATGCTAGAGGCTTTCGTAATGTGGT GTTTGCACGTAAAGTGTTTGATGAAATTCCTGATAGAAGTGAAGTTACATGCTGGACTTCTTTGATCACTGGTTATGCTC AGTCTGGTCATGGTGAGGAGGTTTTGCAGCTTTTCCACATGATGGTTAGGCAGAACTTGCGTCCCCAAAATGATACCATG GTTAGTGTTTTATCAGCTTGCTCTAGCCTTGAGATATCAAAAATTGAGAGATGGGTTTACTTTCTTTCAGAATTGATTGA TGATAGCACGAGTAATGGAGAAAGCTGTCATGATTCGGTTAACACGGTTTTAGTCTATTTGTTTGGGAAATGGGGGAATG TTGAGAAGAGTAGAGAAAGGTTTGACCGAATTTCTGCTGCAGGAAAAAGAGGTGTGGTTCCTTGGAATGCTATGATAAGT GCATATGTTCAGGATGGTTGCCCTGTGGAGGGTTTAAGTCTTTTTCGGATTATGGTAAAAGAAGGAACCACTAGACCTAA CCACGTTACAATGGTTAGTGTCCTGTCAGCCTGTGCTCAAATTGGTGATTTGAGTCTTGGCAAATGGGTTCATGAATACC TTATATCCATAGGACATAAAGGTAACATTGGTTCAAACCAAATTCTGGCGACATCTTTAATTGACATGTATTCTAAATGT GGCAGATTGGATAGGGCAAAGGAAGTTTTTGAGCATGCAGTCTCCAAAGATGTTGTCTTGTTTAATGCAATGATCATGGG TCTTGCTGTAAACGGTGAAGGAGAGGATGCATTGAGACTCTTCTACAAAATGCCAGAATTTGGCTTGCAACCCAATGCTG GAACATTTCTTGGTGCTCTGAGTGCATGCAGTCACTCTGGGTTCTTGGAGAGAGGACGTCAGATTTTCAGAGACATGAGC TTTTCCACTTCTCTTACATTGGAACATTATGCTTGTTACATTGATCTCCTTGCAAGAGTGGGATGCATTGAAGAAGCTAT TGAAGTTGTGACTTCCATGCCTTTCAAGCCTAACAATTTTGTCTGGGGTGCTCTGCTTGGAGGTTGTTTGCTCCACTCTA GAGTTGAGTTGGCTCAAGAGGTTTCGAAGAGGCTTGTTGAAGTAGACCCAACTAGTTCTGGAGGCTATGTTATGTTAGCT AATGCACTTGCTTCTGATAGGCAATGGAATGATGTCTCAGCACTGCGGTTGGAAATGAGAGAGAAGGGCATCAAGAAGCA GCCAGGAAGTAGCTGGATTAGTGTGGATGGAGTTGTACATGAATTTCTTGTTGGCTATTTGTCTCATCCTCAAATTGAGG GCATTTATCTTACATTGACTGGATTGGCGAAGCATATGAAAGCACCAAGCCATTGTCAATCAGTGAGCTGTTACTAGATA GAAGAATGCAAGGGATAAGTAACTCTAGACCAATAATTTTGTTAATGAAAATGCATGAAAGAAGTGGATATAATTCAAAA CGCATTTTGATTTTATTTTCTTTGTAAGAACGTGAGATTTAATTAATGATTTATATATACATTTTCAAATATTTTCCTTT GTAACAAAAAAAAAATACATTTTCAAATCATAGAAGCCCATCAAAGAGTATTTGGTTATATTGGAAGGGAACATTAATTT CAGCCCCTATTTGATTTGAGAAGATATTAGTTTTATTATCTGATTTCACATTTAATCACGAAATAATAAACGAGGTTTCA CAACTGCACCTGTAGAGAGTTGTCAACAAAAAAGAGTTGTGTTTTACTTCCAAGTATAAAATAATCTGATCCTAATCTTG ATATGAAATTACAAGTCAAACAATTTGCCATTAAAAAATCTCTAAGAAAAC
CDS sequence (LotjaGi5g1v0325400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCCATTGTCTCTTCACTTCACCCAGAAGTTCAAACATTGCTATCTTCTTCCCTTTCGCTCTTCGTGTTCCATAGT TGATCACACTCCTACCACCTTCACAAACCTCTTACAGGGCCACATTCCGCGTTCTCATCTTCTCCAAATCCATGCACGCA TTTTCCAACTCGGCGCACACCAAGACAATCTCCTCGCTACGCGCCTCATTGGCCACTACCCACCTCGCATTGCTCTCAGG GTCTTTCACTATCTACACAATCCAAACATCTTCCCTTTCAACGCCATCATCAGAGTCCTCGCTGAACAGGGTCACGTTTC CCATGTCTTCTCACTGTTCAACGATTTGAAGCACCGTGTACTTGCACCCAATGACTTCACCTTCTCTTTTCTCCTTAAGG TTTGCTTTCGGTCCAAAGATGCTCGTTGTGCTGAACAGGTTCATGCCCACATTCAGAAGATGGGTTATCTCAATGACCCT TCTGTTAGTAATGGGTTGGTTGCAGTGTATGCTAGAGGCTTTCGTAATGTGGTGTTTGCACGTAAAGTGTTTGATGAAAT TCCTGATAGAAGTGAAGTTACATGCTGGACTTCTTTGATCACTGGTTATGCTCAGTCTGGTCATGGTGAGGAGGTTTTGC AGCTTTTCCACATGATGGTTAGGCAGAACTTGCGTCCCCAAAATGATACCATGGTTAGTGTTTTATCAGCTTGCTCTAGC CTTGAGATATCAAAAATTGAGAGATGGGTTTACTTTCTTTCAGAATTGATTGATGATAGCACGAGTAATGGAGAAAGCTG TCATGATTCGGTTAACACGGTTTTAGTCTATTTGTTTGGGAAATGGGGGAATGTTGAGAAGAGTAGAGAAAGGTTTGACC GAATTTCTGCTGCAGGAAAAAGAGGTGTGGTTCCTTGGAATGCTATGATAAGTGCATATGTTCAGGATGGTTGCCCTGTG GAGGGTTTAAGTCTTTTTCGGATTATGGTAAAAGAAGGAACCACTAGACCTAACCACGTTACAATGGTTAGTGTCCTGTC AGCCTGTGCTCAAATTGGTGATTTGAGTCTTGGCAAATGGGTTCATGAATACCTTATATCCATAGGACATAAAGGTAACA TTGGTTCAAACCAAATTCTGGCGACATCTTTAATTGACATGTATTCTAAATGTGGCAGATTGGATAGGGCAAAGGAAGTT TTTGAGCATGCAGTCTCCAAAGATGTTGTCTTGTTTAATGCAATGATCATGGGTCTTGCTGTAAACGGTGAAGGAGAGGA TGCATTGAGACTCTTCTACAAAATGCCAGAATTTGGCTTGCAACCCAATGCTGGAACATTTCTTGGTGCTCTGAGTGCAT GCAGTCACTCTGGGTTCTTGGAGAGAGGACGTCAGATTTTCAGAGACATGAGCTTTTCCACTTCTCTTACATTGGAACAT TATGCTTGTTACATTGATCTCCTTGCAAGAGTGGGATGCATTGAAGAAGCTATTGAAGTTGTGACTTCCATGCCTTTCAA GCCTAACAATTTTGTCTGGGGTGCTCTGCTTGGAGGTTGTTTGCTCCACTCTAGAGTTGAGTTGGCTCAAGAGGTTTCGA AGAGGCTTGTTGAAGTAGACCCAACTAGTTCTGGAGGCTATGTTATGTTAGCTAATGCACTTGCTTCTGATAGGCAATGG AATGATGTCTCAGCACTGCGGTTGGAAATGAGAGAGAAGGGCATCAAGAAGCAGCCAGGAAGTAGCTGGATTAGTGTGGA TGGAGTTGTACATGAATTTCTTGTTGGCTATTTGTCTCATCCTCAAATTGAGGGCATTTATCTTACATTGACTGGATTGG CGAAGCATATGAAAGCACCAAGCCATTGTCAATCAGTGAGCTGTTACTAG
Protein sequence (LotjaGi5g1v0325400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPLSLHFTQKFKHCYLLPFRSSCSIVDHTPTTFTNLLQGHIPRSHLLQIHARIFQLGAHQDNLLATRLIGHYPPRIALR VFHYLHNPNIFPFNAIIRVLAEQGHVSHVFSLFNDLKHRVLAPNDFTFSFLLKVCFRSKDARCAEQVHAHIQKMGYLNDP SVSNGLVAVYARGFRNVVFARKVFDEIPDRSEVTCWTSLITGYAQSGHGEEVLQLFHMMVRQNLRPQNDTMVSVLSACSS LEISKIERWVYFLSELIDDSTSNGESCHDSVNTVLVYLFGKWGNVEKSRERFDRISAAGKRGVVPWNAMISAYVQDGCPV EGLSLFRIMVKEGTTRPNHVTMVSVLSACAQIGDLSLGKWVHEYLISIGHKGNIGSNQILATSLIDMYSKCGRLDRAKEV FEHAVSKDVVLFNAMIMGLAVNGEGEDALRLFYKMPEFGLQPNAGTFLGALSACSHSGFLERGRQIFRDMSFSTSLTLEH YACYIDLLARVGCIEEAIEVVTSMPFKPNNFVWGALLGGCLLHSRVELAQEVSKRLVEVDPTSSGGYVMLANALASDRQW NDVSALRLEMREKGIKKQPGSSWISVDGVVHEFLVGYLSHPQIEGIYLTLTGLAKHMKAPSHCQSVSCY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 71 | 172 | 102 | 1.8E-13 | ||
| Pfam | 88 | 135 | 48 | 1.2E-10 | ||
| ProSiteProfiles | 89 | 123 | 35 | 8.627 | ||
| TIGRFAM | 93 | 124 | 32 | 0.0022 | ||
| ProSiteProfiles | 124 | 158 | 35 | 7.256 | ||
| PANTHER | 145 | 242 | 98 | 4.8E-100 | – | |
| ProSiteProfiles | 159 | 190 | 32 | 5.777 | ||
| Gene3D | 174 | 274 | 101 | 1.3E-11 | ||
| ProSiteProfiles | 192 | 226 | 35 | 11.279 | ||
| TIGRFAM | 195 | 226 | 32 | 1.9E-6 | ||
| Pfam | 195 | 223 | 29 | 1.1E-6 | ||
| PANTHER | 262 | 358 | 97 | 4.8E-100 | – | |
| ProSiteProfiles | 302 | 336 | 35 | 9.46 | ||
| Pfam | 302 | 350 | 49 | 2.6E-7 | ||
| TIGRFAM | 306 | 334 | 29 | 4.2E-5 | ||
| Gene3D | 336 | 474 | 139 | 5.5E-28 | ||
| ProSiteProfiles | 338 | 372 | 35 | 6.785 | ||
| PANTHER | 356 | 571 | 216 | 4.8E-100 | – | |
| ProSiteProfiles | 377 | 407 | 31 | 8.353 | ||
| TIGRFAM | 382 | 410 | 29 | 0.0023 | ||
| Pfam | 407 | 454 | 48 | 2.6E-8 | ||
| ProSiteProfiles | 408 | 442 | 35 | 11.597 | ||
| TIGRFAM | 410 | 444 | 35 | 2.0E-6 | ||
| ProSiteProfiles | 443 | 473 | 31 | 6.577 | ||
| Gene3D | 475 | 592 | 118 | 8.0E-12 | ||
| ProSiteProfiles | 477 | 507 | 31 | 6.259 | ||
| ProSiteProfiles | 509 | 539 | 31 | 5.897 | ||
| ProSiteProfiles | 543 | 577 | 35 | 7.256 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0325400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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