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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0329900 |
| Transcript ID | LotjaGi5g1v0329900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD repeat-containing protein 1; TAIR: AT3G18060.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q9LV35|AIP12_ARATH Actin-interacting protein 1-2; TrEMBL-Plants: tr|I1NFV4|I1NFV4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0329900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64695757..64699587) extracted from Lotus japonicus Gifu genome v1.2.
CAATACTTAATTAAAAAATAAAATGTCAAATAAATAGGTAAAATATGTTATGAGATGAAAAAGTGTGAGTGATGAAGGGT GGAGGTTGATTGAGACCCGAAGATTCAGTTATGTTACCCGCCAACTTGTTCAAAACCAATTCCTCCATTCCCGGAGACAC TCTCTCTTCACCACAAAAATGTGAAGAGAGAAGAAGCAGTGAATAGAGAGAATCAATTCAACTCAAATCCATTATCCACA ATCAATGGCGACCCTCTCTGAAACCTACGCCTGCGTTCCCTCCACGGAGCGTGGCCGCGGCATTCTAATCTCCGGCGACC CCAAATCCAACAACATCCTCTACTGCACCGCCCGCTCCGTCATCATCCGCAACCTCGACAACCCTCTCCAAGTCTCCGTC TACGGCGAACACGCCTACCCCGTCACCGTCGCCCGCTACTCCCCCAACGGCGAGTGGATCGCCTCCGCCGATGTCTCCGG CACCGTCCGCATCTGGGGGACCCACAACGACTTCGTCCTCAAAAACGAGTTCCGTGTCCTCTCTAGTCGGATCGATGATC TTCAATGGTCCGCCGATGGCATGAGGATCGTTGCCTCTGGGGATGGCAAGGGCAAATCCTTCGTTCGCGCTTTCATGTAT TTCATTCCCTCTTCTTTTATCTGCATTTTTCAATTCTATCAATTTTTCTTATAATGTAGAAATTCTAGGAAGAATTGATT ACTGTTGGTGATTTATTCATGTTTGTTATATTTTGCAATTTAAGGTGGGATTCAGGCTCCACTGTTGGTGATTTCGATGG CCATTCGCGGCGCGTTTTGAGTTGTGCATTCAAACCAACAAGGCCATTCCGCATTGTCTCGTGTGGAGAGGATTTCTTAG TGAATTTCTATGATGGTCCACCCTTCAAGTTCAATATGTCCATCAGGTAAATAGGGTCAAGAGATTAACATGGTTTCGAT AAATTATAAGTTTATAGTCTATAATCGAGACTAGAGTGTTATATTATGGCGTTATCGATTCTTTACATTTGGAAATAGGG TCAAGTGTTAGCATGAAAGAAGTGTTTTGGGTTGAGTAGGTTTCCATTTCCTTATTCAGGTTGTCATAGAAGACATTATG TGTCTGCAGGGACCATACGAATTTCGTCAACTGTGTTAGATATTCTCCAGATGGGAGCAAATTTATTACTGTTAGCTCAG ATAGGAAGGGTATTATATACGACGGAAAGACGGGGAATAAACTTGGGGAATTGTCTGCAGAGGATGGTCACAAGGGCAGC ATATATGCTGTTAGTTGGAGTCCTGACAGTAAACAGGTGAGCTTGTGTTTGAATCTTACCATTTAAAAGTTGAATTCGAT AAACTGTTAACCTTTTTTTGGCCAGAATTGTAGTTCAATAATATTGCTATGTGAAAGTGACTTAGAGTTGATCAAGCATT GTCAAGAGCTATGACAATGATTAATCACAATATATTATAATAGATTACAATGGTGACAAATGATTTTATTTTTTAGCAAG CATAGTTACAAAAAAAATTGATCTGGTGTTCTTTTTCATGTTTAGGGCTGCTTTTGACATTCTATTTTATATCTCTTATC AATCAATTCCAGGTTCTTACCGTGTCTGCTGACAAATCTGCTAAAGTATGGGATATTCTTGAGGATGGTAGTAGTGGAAC ATTAAATAAGACTTTGGCACATACTGAATCTGGTGGGGTGGAAGACATGCTTGTTGGCTGTCTTTGGCAGAATGATCATA TGCTTACTGTCTCTCTTGGTGGCACGATTAATTTATATTCTGCTAAGGATTTGGATAAAAGCCCATTGACATTATCTGGT CACATGAAGAATGTCACCGTTTTGAATCTACTCAACAAAAGTGAAAAGATGCTTTTGTCCAGCAGTTATGATGGAATTAT TATTAGATGGATTCCTGGCGTTGGTTACAGTGGTAAGTTTGACAGTAAACAATTTGGATTAATCAAATTGTTAGCGGTTG GCGAAGAAGAAGTTATTACTTCTGGATTTGACAACAAGGTAAACTGATAGACACGTGTTCTTTGATTTTTAAGTGTATAA AATAACATTTAGATGCCTATTTTATCCATCTGTCCTATAGAAGCCCATATCAAACCCTGAAGGCACACATTTGATGTCAC TCTGATTGTTCAATCATTTTTGTACAAAAGTCAATATTTCTCATTGCATTCGAGTTACATTCAGTAATAGCCAAACCAGG AAGTCTGTTTTGTTTATGTAAAATCAAGTATGTCGATTCCAGTACTAGAGATTGAATTTGAGTGTAAATCTAGGTCTGGC CTCTGATTTTTGCTACTGTTATAATGGTGTTTATTTTTAATGAAGGTTTTGCTCTTGGGAGACTTGTGAAGCAATTTGTT GCTAAATAGTGCATTTCACTGTAGGTTCAACATGAATTAGATGATGTCTTTAATCACTATTAGCCATTTCATAATTTTTG CTTCCAAATTGTAAGAGAGATCATAAAATGTTCTGTTTTTCTTAAGTAGATATTACATTTACGAACTGGGCAACTATAAG ATGGAAAATTTTATAAATTTGACTTTAATATTTGCTGAGCAAGTTATATATGTGTTTAATGAAGGTATACAGAGTTCCTC TTCAAGGGGAGAATTTTGGTCCTGCTGAGCAAGTTGATGTTGGAAGTCAGCCTAAGGACGTGAGCCTAGCACTGAATCCT CCTGAACTTGCTCTCATTGCAATTGAGTCCGGGATTGTCTTACTTACCGGTTCAAAAATTGTCTCCACTATAAACCTGGG TTTTACTGTGACCGCATGTACTATTTCACCCGATGGTAGTGAAGCAATTGTTGGTGGACAAGATGGTAAGTTGCACATAT ATTCTGTTTCAGGAGATACATTTACAGAACAGAGTGTTCTTGAGAAGCACCGAGGTGCCATCAGCGTAATCAGATATTCT CCCGACTTTACCATGTTTGCATCTGCTGATTTGAATCGCGAAGCTGTTGTGTGGGACCGTGTTTCCAGAGAGGTAAGTTG AGCCTGACATGATTGCTACATGAAGTTCAAGTGTTGTATGCCTGTCTACTTTGGTTTGTCCCATACCAAATTTTCTTGTT TGAAATGAGAAATATACGACTTTCCCATGATTATAGCATTCTTGCTTGAGAATTTGTGATTTGTGCATGTTTTTGTAACT TCTTCCCTTAGTGTGAGCTTCACTGGTGGCCTTGATTCTTGATTTATTGAAGGGGAAACTAAATAACTTCACCCAAGCTT TGGCCTAACATGGCAAACCTGCCACCAGGTTTTGAACATTAGGCTTTTTTATAGCATATTTGGTTTTAGAATTTGGTTAG GAGCTGCAAATCTTAGCTTCTGAGTAAACATGCCTTGAATTTTGCTGAAAACAATCATGCTATTAGTGTCTATAACCATA CTATAGATACCTACCTCCCCCTTTGTCAAACAACACTAATTTGACTATATAAGCGTCCCTTGAAATTCAATGTTACTGAA ATTCAATCTCCACTAAATTGAGCAGACATTTGACTGAAATTTTTCTCTTTCAGGTGAAGCTCAACAATATGTTGTTTCAC ACTGCACGTATTAACTGTCTAGCTTGGTCACCTGATAACAGACTGGTAGCTACTGGTTCACTTGATACATGCGTCATTAT ATATGAAATTGGAAAGCCAGCAGCAAGTCGCAGAACCATTAAAGGTGCTCATTTAGGTGGAGTTTATGGGTTGACTTTCA TTGATCAAGAGAGAGTGGTCAGTTCAGGAGAAGATGGTTGTATTCGTGTCTGGACTTTAAATTCTGACTGA
CDS sequence (LotjaGi5g1v0329900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACCCTCTCTGAAACCTACGCCTGCGTTCCCTCCACGGAGCGTGGCCGCGGCATTCTAATCTCCGGCGACCCCAA ATCCAACAACATCCTCTACTGCACCGCCCGCTCCGTCATCATCCGCAACCTCGACAACCCTCTCCAAGTCTCCGTCTACG GCGAACACGCCTACCCCGTCACCGTCGCCCGCTACTCCCCCAACGGCGAGTGGATCGCCTCCGCCGATGTCTCCGGCACC GTCCGCATCTGGGGGACCCACAACGACTTCGTCCTCAAAAACGAGTTCCGTGTCCTCTCTAGTCGGATCGATGATCTTCA ATGGTCCGCCGATGGCATGAGGATCGTTGCCTCTGGGGATGGCAAGGGCAAATCCTTCGTTCGCGCTTTCATGTGGGATT CAGGCTCCACTGTTGGTGATTTCGATGGCCATTCGCGGCGCGTTTTGAGTTGTGCATTCAAACCAACAAGGCCATTCCGC ATTGTCTCGTGTGGAGAGGATTTCTTAGTGAATTTCTATGATGGTCCACCCTTCAAGTTCAATATGTCCATCAGGGACCA TACGAATTTCGTCAACTGTGTTAGATATTCTCCAGATGGGAGCAAATTTATTACTGTTAGCTCAGATAGGAAGGGTATTA TATACGACGGAAAGACGGGGAATAAACTTGGGGAATTGTCTGCAGAGGATGGTCACAAGGGCAGCATATATGCTGTTAGT TGGAGTCCTGACAGTAAACAGGTTCTTACCGTGTCTGCTGACAAATCTGCTAAAGTATGGGATATTCTTGAGGATGGTAG TAGTGGAACATTAAATAAGACTTTGGCACATACTGAATCTGGTGGGGTGGAAGACATGCTTGTTGGCTGTCTTTGGCAGA ATGATCATATGCTTACTGTCTCTCTTGGTGGCACGATTAATTTATATTCTGCTAAGGATTTGGATAAAAGCCCATTGACA TTATCTGGTCACATGAAGAATGTCACCGTTTTGAATCTACTCAACAAAAGTGAAAAGATGCTTTTGTCCAGCAGTTATGA TGGAATTATTATTAGATGGATTCCTGGCGTTGGTTACAGTGGTAAGTTTGACAGTAAACAATTTGGATTAATCAAATTGT TAGCGGTTGGCGAAGAAGAAGTTATTACTTCTGGATTTGACAACAAGGTATACAGAGTTCCTCTTCAAGGGGAGAATTTT GGTCCTGCTGAGCAAGTTGATGTTGGAAGTCAGCCTAAGGACGTGAGCCTAGCACTGAATCCTCCTGAACTTGCTCTCAT TGCAATTGAGTCCGGGATTGTCTTACTTACCGGTTCAAAAATTGTCTCCACTATAAACCTGGGTTTTACTGTGACCGCAT GTACTATTTCACCCGATGGTAGTGAAGCAATTGTTGGTGGACAAGATGGTAAGTTGCACATATATTCTGTTTCAGGAGAT ACATTTACAGAACAGAGTGTTCTTGAGAAGCACCGAGGTGCCATCAGCGTAATCAGATATTCTCCCGACTTTACCATGTT TGCATCTGCTGATTTGAATCGCGAAGCTGTTGTGTGGGACCGTGTTTCCAGAGAGGTGAAGCTCAACAATATGTTGTTTC ACACTGCACGTATTAACTGTCTAGCTTGGTCACCTGATAACAGACTGGTAGCTACTGGTTCACTTGATACATGCGTCATT ATATATGAAATTGGAAAGCCAGCAGCAAGTCGCAGAACCATTAAAGGTGCTCATTTAGGTGGAGTTTATGGGTTGACTTT CATTGATCAAGAGAGAGTGGTCAGTTCAGGAGAAGATGGTTGTATTCGTGTCTGGACTTTAAATTCTGACTGA
Protein sequence (LotjaGi5g1v0329900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATLSETYACVPSTERGRGILISGDPKSNNILYCTARSVIIRNLDNPLQVSVYGEHAYPVTVARYSPNGEWIASADVSGT VRIWGTHNDFVLKNEFRVLSSRIDDLQWSADGMRIVASGDGKGKSFVRAFMWDSGSTVGDFDGHSRRVLSCAFKPTRPFR IVSCGEDFLVNFYDGPPFKFNMSIRDHTNFVNCVRYSPDGSKFITVSSDRKGIIYDGKTGNKLGELSAEDGHKGSIYAVS WSPDSKQVLTVSADKSAKVWDILEDGSSGTLNKTLAHTESGGVEDMLVGCLWQNDHMLTVSLGGTINLYSAKDLDKSPLT LSGHMKNVTVLNLLNKSEKMLLSSSYDGIIIRWIPGVGYSGKFDSKQFGLIKLLAVGEEEVITSGFDNKVYRVPLQGENF GPAEQVDVGSQPKDVSLALNPPELALIAIESGIVLLTGSKIVSTINLGFTVTACTISPDGSEAIVGGQDGKLHIYSVSGD TFTEQSVLEKHRGAISVIRYSPDFTMFASADLNREAVVWDRVSREVKLNNMLFHTARINCLAWSPDNRLVATGSLDTCVI IYEIGKPAASRRTIKGAHLGGVYGLTFIDQERVVSSGEDGCIRVWTLNSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 609 | 609 | 0.0 | – | |
| PANTHER | 1 | 609 | 609 | 0.0 | – | |
| Gene3D | 8 | 605 | 598 | 1.2E-202 | ||
| Gene3D | 10 | 324 | 315 | 1.2E-202 | ||
| SUPERFAMILY | 44 | 566 | 523 | 2.59E-51 | ||
| SMART | 46 | 85 | 40 | 3.9E-5 | ||
| Pfam | 51 | 84 | 34 | 8.8E-4 | ||
| ProSiteProfiles | 53 | 610 | 558 | 36.174 | ||
| ProSiteProfiles | 53 | 84 | 32 | 10.442 | ||
| CDD | 56 | 353 | 298 | 7.32905E-46 | – | |
| SMART | 89 | 133 | 45 | 12.0 | ||
| SMART | 134 | 174 | 41 | 3.8E-4 | ||
| SMART | 177 | 216 | 40 | 7.7E-6 | ||
| Pfam | 183 | 211 | 29 | 0.06 | ||
| ProSiteProfiles | 184 | 225 | 42 | 9.94 | ||
| SMART | 219 | 261 | 43 | 7.5E-9 | ||
| Pfam | 222 | 261 | 40 | 1.5E-5 | ||
| ProSiteProfiles | 229 | 262 | 34 | 14.619 | ||
| ProSitePatterns | 248 | 262 | 15 | - | ||
| SMART | 268 | 310 | 43 | 160.0 | ||
| SUPERFAMILY | 292 | 477 | 186 | 8.61E-14 | ||
| SMART | 314 | 354 | 41 | 5.4 | ||
| SMART | 438 | 476 | 39 | 0.25 | ||
| SMART | 481 | 520 | 40 | 7.2E-4 | ||
| ProSiteProfiles | 488 | 520 | 33 | 10.174 | ||
| SMART | 525 | 563 | 39 | 1.7E-6 | ||
| ProSiteProfiles | 531 | 564 | 34 | 10.275 | ||
| Pfam | 534 | 562 | 29 | 2.1E-4 | ||
| SMART | 567 | 606 | 40 | 0.0024 | ||
| ProSiteProfiles | 575 | 610 | 36 | 10.275 | ||
| Pfam | 577 | 605 | 29 | 0.12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0329900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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