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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0330400 |
| Transcript ID | LotjaGi5g1v0330400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat protein; TAIR: AT1G71060.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060, mitochondrial; TrEMBL-Plants: tr|A0A1J7GN59|A0A1J7GN59_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0330400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64748525..64750440) extracted from Lotus japonicus Gifu genome v1.2.
GTTGAAAGTTCGAATTCTCTCGACTCACACACGACAATCTTAGACCTAAATTTATTTGAAAGAAAGATAATAAATTCTTA ATCATTACCAAACCCTATTCATTGTTGCTCTGTCTATCTCACTCTCTGTTTCTACATTTTGTCAATTCTCCCATGGCATT CTCACGATCACCCAAGAGATTCTTCAACCTCTTCTCTTCTAATCTTCCACTCTCTAAACCTTACCCTGCTTCGTTGACAC CCCTTTCAACTTCACCAACCATCAAACTCCCCCAAAACCTATCTGGGTCTCTCAGAATCCACACTCTCACTCCTCACACA CCACATGCCGATAGAATCTGCAAAATCCTATCCAAATCTCCAAATTCCACCATCGACGCCGCTCTTGCCGACCTTCCGGT GGAGGTCTCGCCGGAGTTGGTGGCTGAGGTATTGAACAAGCTGAGCAATGCGGGTGTTCTCGCGCTCTCGTTTTTCCATT GGGCTGAGAAGCAGAAAGGGTTCAAGCACAGCACGGAGAGCTTCCATGCTCTGATTGAGGCACTGGGTAAGATCAGACAG TTCAAGGTGATTTGGAATTTGGTGGAAGACATGAAGCAACGGAAATTGTTGACTAGGGACACTTTTGCCTTCATTGCTCG GAGGTACGCAAGAGCTAGGAAGGTCAAGGAAGCAGTGGAGACGTTTGAGAAGATGGAGAAGTATGGATTGAAGCCAGAAG TGTCGGATTTCAACAAGCTAGTTGATGTTTTGTGCAAGTCTAAGAGCGTTGAGAAAGCACAGGAACTGTTTGATAAAATG CGGCACAGAGGTTTAGTCCCTGATCTCAAGTCCTATACCATTTTGTTAGAAGGGTGGAGTCAGCAGCAAAACTTGTTGAG GGTCAATGAGGTTTGTAGGGAGATGAAGTGTGAGTGTTTTGAGCCTGATGTTGTCACCTATGGTATACTCATCAATGCAT ATTGTAAGGCCAAAAAATATGATGAGGCCATTGGGTTCTATCATGAGATGCTAGAAAAGAATATGATGCCATCTCCTCAC GTATATAGCACTTTGATTAATGGTTTGGGTTCTGATAAGAGGTTGGATGAAGCTCTTGAATTCTATGAAAAATTCAAGGC TAATGGTTTTGCCCCAGAAGCACCTACCTATAATGCTGTTGTTGGAGCTTATTGTTGGTCAATGCGGATGGATGATGCTT ATAGGGTCGTTGATGAGATGAAACAATGTGGGGTTGGTCCAAATTCTAGAACATATGACATAATACTTCATCACCTGATA AAGGCTCGAAGAACCCAAGAAGCTTACTCGGTTTTCCAGAGAATGAGTAGTGAGATGGGGTGTGAGCCTACTGTGAGCAC TTATGACATCATTTTGAGGATGTTTTGTGATGAGGAGAGATTGGACATGGCAATGGCGGTTTGGGATCAGATGAGAGCCA GGGGAATCCTTCCTGGAATGCATGTGTTTTTTGTGTTAATCAGTGCCTTGTGCCATGCAAATAAGTTGGATGCAGCCTGT AAGTACTTTCAACAAATGTTGGATGTTGGTATTCGGCCTCCTGCAAACTTGTTTAGTACCTTGAAGCAAGCTCTAATTGA TGCGGGGATGGAGACTACGGCTATACATTTTGCTTTGAAAATTGATAAACTGAGGAAAACTCCACTAGTTGCTTGACCAC AAAGACATTCAAGCATATTAGGTGGTTAACAGAGTTATTATCTACTGTATTTAGCAATTTATCCATTGACTCTTTATTAG GTGACCTATTTTATTTATATGTCAATTTACCTTTATTTAGTACATGTTTGAAAGTTCTTCTACAATTGATTTTGAATTCA TAACCAATTATAAGGATAAGTTTATGTAGTAACTTCTGAATTTCAGAATTGATTTTGATAAAAGAGAAGTTGATCG
CDS sequence (LotjaGi5g1v0330400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTCTCACGATCACCCAAGAGATTCTTCAACCTCTTCTCTTCTAATCTTCCACTCTCTAAACCTTACCCTGCTTC GTTGACACCCCTTTCAACTTCACCAACCATCAAACTCCCCCAAAACCTATCTGGGTCTCTCAGAATCCACACTCTCACTC CTCACACACCACATGCCGATAGAATCTGCAAAATCCTATCCAAATCTCCAAATTCCACCATCGACGCCGCTCTTGCCGAC CTTCCGGTGGAGGTCTCGCCGGAGTTGGTGGCTGAGGTATTGAACAAGCTGAGCAATGCGGGTGTTCTCGCGCTCTCGTT TTTCCATTGGGCTGAGAAGCAGAAAGGGTTCAAGCACAGCACGGAGAGCTTCCATGCTCTGATTGAGGCACTGGGTAAGA TCAGACAGTTCAAGGTGATTTGGAATTTGGTGGAAGACATGAAGCAACGGAAATTGTTGACTAGGGACACTTTTGCCTTC ATTGCTCGGAGGTACGCAAGAGCTAGGAAGGTCAAGGAAGCAGTGGAGACGTTTGAGAAGATGGAGAAGTATGGATTGAA GCCAGAAGTGTCGGATTTCAACAAGCTAGTTGATGTTTTGTGCAAGTCTAAGAGCGTTGAGAAAGCACAGGAACTGTTTG ATAAAATGCGGCACAGAGGTTTAGTCCCTGATCTCAAGTCCTATACCATTTTGTTAGAAGGGTGGAGTCAGCAGCAAAAC TTGTTGAGGGTCAATGAGGTTTGTAGGGAGATGAAGTGTGAGTGTTTTGAGCCTGATGTTGTCACCTATGGTATACTCAT CAATGCATATTGTAAGGCCAAAAAATATGATGAGGCCATTGGGTTCTATCATGAGATGCTAGAAAAGAATATGATGCCAT CTCCTCACGTATATAGCACTTTGATTAATGGTTTGGGTTCTGATAAGAGGTTGGATGAAGCTCTTGAATTCTATGAAAAA TTCAAGGCTAATGGTTTTGCCCCAGAAGCACCTACCTATAATGCTGTTGTTGGAGCTTATTGTTGGTCAATGCGGATGGA TGATGCTTATAGGGTCGTTGATGAGATGAAACAATGTGGGGTTGGTCCAAATTCTAGAACATATGACATAATACTTCATC ACCTGATAAAGGCTCGAAGAACCCAAGAAGCTTACTCGGTTTTCCAGAGAATGAGTAGTGAGATGGGGTGTGAGCCTACT GTGAGCACTTATGACATCATTTTGAGGATGTTTTGTGATGAGGAGAGATTGGACATGGCAATGGCGGTTTGGGATCAGAT GAGAGCCAGGGGAATCCTTCCTGGAATGCATGTGTTTTTTGTGTTAATCAGTGCCTTGTGCCATGCAAATAAGTTGGATG CAGCCTGTAAGTACTTTCAACAAATGTTGGATGTTGGTATTCGGCCTCCTGCAAACTTGTTTAGTACCTTGAAGCAAGCT CTAATTGATGCGGGGATGGAGACTACGGCTATACATTTTGCTTTGAAAATTGATAAACTGAGGAAAACTCCACTAGTTGC TTGA
Protein sequence (LotjaGi5g1v0330400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFSRSPKRFFNLFSSNLPLSKPYPASLTPLSTSPTIKLPQNLSGSLRIHTLTPHTPHADRICKILSKSPNSTIDAALAD LPVEVSPELVAEVLNKLSNAGVLALSFFHWAEKQKGFKHSTESFHALIEALGKIRQFKVIWNLVEDMKQRKLLTRDTFAF IARRYARARKVKEAVETFEKMEKYGLKPEVSDFNKLVDVLCKSKSVEKAQELFDKMRHRGLVPDLKSYTILLEGWSQQQN LLRVNEVCREMKCECFEPDVVTYGILINAYCKAKKYDEAIGFYHEMLEKNMMPSPHVYSTLINGLGSDKRLDEALEFYEK FKANGFAPEAPTYNAVVGAYCWSMRMDDAYRVVDEMKQCGVGPNSRTYDIILHHLIKARRTQEAYSVFQRMSSEMGCEPT VSTYDIILRMFCDEERLDMAMAVWDQMRARGILPGMHVFFVLISALCHANKLDAACKYFQQMLDVGIRPPANLFSTLKQA LIDAGMETTAIHFALKIDKLRKTPLVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 98 | 253 | 156 | 7.3E-31 | ||
| PANTHER | 104 | 349 | 246 | 3.4E-86 | – | |
| ProSiteProfiles | 120 | 150 | 31 | 7.202 | ||
| ProSiteProfiles | 154 | 188 | 35 | 10.358 | ||
| TIGRFAM | 161 | 188 | 28 | 2.9E-4 | ||
| Pfam | 164 | 186 | 23 | 0.01 | ||
| SUPERFAMILY | 165 | 330 | 166 | 4.97E-7 | – | |
| ProSiteProfiles | 189 | 223 | 35 | 11.608 | ||
| Pfam | 192 | 234 | 43 | 1.3E-10 | ||
| TIGRFAM | 193 | 224 | 32 | 4.2E-7 | ||
| ProSiteProfiles | 224 | 258 | 35 | 8.133 | ||
| Gene3D | 254 | 321 | 68 | 8.0E-19 | ||
| Pfam | 258 | 305 | 48 | 2.3E-15 | ||
| ProSiteProfiles | 259 | 293 | 35 | 13.537 | ||
| TIGRFAM | 261 | 294 | 34 | 1.1E-9 | ||
| ProSiteProfiles | 294 | 328 | 35 | 11.4 | ||
| TIGRFAM | 297 | 328 | 32 | 9.9E-7 | ||
| Gene3D | 322 | 393 | 72 | 2.0E-15 | ||
| PANTHER | 323 | 493 | 171 | 3.4E-86 | – | |
| ProSiteProfiles | 329 | 363 | 35 | 11.367 | ||
| TIGRFAM | 332 | 364 | 33 | 1.2E-5 | ||
| Pfam | 332 | 376 | 45 | 5.9E-11 | ||
| ProSiteProfiles | 364 | 399 | 36 | 9.58 | ||
| TIGRFAM | 367 | 401 | 35 | 4.4E-7 | ||
| Gene3D | 394 | 504 | 111 | 2.1E-20 | ||
| ProSiteProfiles | 400 | 434 | 35 | 11.641 | ||
| Pfam | 401 | 448 | 48 | 3.2E-8 | ||
| TIGRFAM | 403 | 434 | 32 | 1.2E-6 | ||
| ProSiteProfiles | 435 | 469 | 35 | 10.041 | ||
| TIGRFAM | 442 | 469 | 28 | 1.4E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0330400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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