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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0330800 |
| Transcript ID | LotjaGi5g1v0330800.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin efflux carrier family protein; TAIR: AT1G71090.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9C999|PILS2_ARATH Protein PIN-LIKES 2; TrEMBL-Plants: tr|I1N7B8|I1N7B8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0330800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64800553..64802993) extracted from Lotus japonicus Gifu genome v1.2.
TTGCACCTCCTGATCGTGATGGCATGAACAAGTGGCAGACTCGGATCAATGTTCATGCTGTGACAGATATCACTTTTCTC TTGAGATTGTTAAGAATTTCGTGAACTGAAACCTTTCAGTTGGCTGCAACCAGATTAACGTGAAAGCTATTATCTTTTTC CAAGAGGGTCCTGAAACTTCTGCATCTGTTAATTTGTAAGTTTCCTCATTCTTCACTCTCATGGTAGGCTTTTGCTTCAG CTTGTAAACTATCGATGATGCCCCATTATCTCATTGTTTTTTATTATGACCTGTTCTTATTATTTTATCATCAATCAAAA CAATGCTCAAATTCTTAATATCTTAATCTTCTCATAATTTTTCCTTAAACCCGGTTGTGGTAATTCAGTCACACTACCCA GACACTCTTCTATATACTATTATACTCTTGGTTTGGCTTCTTCATGAGATGATTGTGAAACCTGTTTTGTGTGTATGTTT TTATGTTGTGCAGTTGACCTTGCTTGAGTTGTTATTGCAATATCCAAGGTTACCTTGAATCTTGATAATAATTTGTAGCA GGTAATGTAATATTGTCCTGCATTTTTGTTTTTAAGTGATATGTGGAAATTGAGTTTTAGGTGATATAATGTTATTGTGC ATTTGAGTGTGTCTTGTGTGCTCTCTGCATGGTTTAATTTCAGGAGATTTTGTTCTTTTTCAGATAATCATGTCAGGAAC TTTGCATAAAAGTAATATGAGGTCTAACGGCGAAGATCTTCGAACCGCTCTACAACCTTTGTTGAAGCTTCTTAGTCTTA CAGTCATAGGATTACTTCTTGCAAACCCAAAAATGCAATTGATTCCAAAAGCCACATTCAAACTCCTCAGCAAACTTGTA TTTGCCCTGTTCTTACCCTGCCTAATCTTCAGTGAACTTGGTGAAAGCATAACTCTTAAAAAATTTGTGGAGTGGTGGTT TATCCCAGTTAATGTCCTTGTGAGCACAGCTCTAGGATGCATACTAGGGTACATAGTGGTGGCTATATGTCGGCCGCCGC CGCGGTTCAACAGATTCACTATCATCATGACAGGATTTGGAAATACTGGAAATCTCCTTCTTGCTATAGTTGGATCTGTT TGCCACAACACTGAGAACAGCCTATTTGGAAAAGAATGCAACACAAGTGGGGTGGCTTATGTCTCTTGGTCTCAATGGGT TTCTGTGATTCTTGTTTACACCTTTGTTTATCACATGATGGAGCCTCCTATGGAGTACTATGAGATTGTTGAGGATGAGG CTGAAATCAATGAAGAAGGGCCACTTAATGATATCAGTAGGCCACTCCTTGTAGAAGCTGAGTGGCCTGGCATTGAGGAT AATGAGACTGAACATTCCAAAACACCCTTTATTGCAAGGATCTTTAAGAGCATTTCAGGTACAACTTTGGCATATTCACA CACATTTTCTCTTTCATGTCACTAGTTACTGCAGTCATCAAATTGTTTCCGTTGAATGGAGATAGGACGGCTCAGATTTC AAGTTCTGGTTGTAACTTCAATTTGTTGCGTTAAATTTAAACCGTTTGATCTTCATTCAATAGTTATGATTTGCTGACTG CAATGACTCTCCACTATATTTTGACTGCAGTAAATCTGCGTCCATCACTTATCATATCTCTTACTTATCTTGCCTATAGT CTTTTCTAACTCTGGGAGGATATGGAAATATAGTGTTTATGGAACATTTTTGTTTCAGGTATGTCCTCTTCTAGTATTCC AGACTTTGACATCACAGCAGAAAGCAGTGGGAGCAGCACAATGTCCCTTAGGTGTTTAGCTGAGCCTAGAGTTGTTAGGA AGATCAGAATTGTTGCAGAGCAAACTCCAATTCAACAGATACTTCAACCCCCAACAATTGCATCTCTACTAGCTATCATC ATTGGCACAGTGCCTCAGCTGAAAACATTTTTCTTTGGAAATGATGCTCCAATGTCTTTTATGACAGACAGTTTGGCGAT TTTAGCCGGCGCAATGGTACCTTCTGTGATGCTTATACTTGGGGGCATGCTGGCTGAAGGGCCAAATGAATCAACACTTG GAATCAAAACTACAATTGGAATCATTGTGGCCAGACTAGTGGTGCTTCCTCTCCTAGGAATTGGGATTGTGGTGTTGGCT GATAAGCTAAATTTCTTGGTTGAGAATGATGCAATGTTTAGATTTGTGCTTCTGCTGCAGTACACAACACCAAGTGCCAT TTTACTGGGTGCAATTGCAAGCTTGAGGGGTTATGCAGTAAGTGAAGCTTCAGCAATTCTCTTCTGGCAGCATGTGTTGG CTCTTTTCTCTCTTTCTGTGTACATTGTAATTTACTTTAGAATAATTGTCTAATTTAAAGTTGCTGCATATTTTACACCT AACATTGTTCTGGTATTAGTATACAGATAAAGTGATCATGA
CDS sequence (LotjaGi5g1v0330800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGGAACTTTGCATAAAAGTAATATGAGGTCTAACGGCGAAGATCTTCGAACCGCTCTACAACCTTTGTTGAAGCT TCTTAGTCTTACAGTCATAGGATTACTTCTTGCAAACCCAAAAATGCAATTGATTCCAAAAGCCACATTCAAACTCCTCA GCAAACTTGTATTTGCCCTGTTCTTACCCTGCCTAATCTTCAGTGAACTTGGTGAAAGCATAACTCTTAAAAAATTTGTG GAGTGGTGGTTTATCCCAGTTAATGTCCTTGTGAGCACAGCTCTAGGATGCATACTAGGGTACATAGTGGTGGCTATATG TCGGCCGCCGCCGCGGTTCAACAGATTCACTATCATCATGACAGGATTTGGAAATACTGGAAATCTCCTTCTTGCTATAG TTGGATCTGTTTGCCACAACACTGAGAACAGCCTATTTGGAAAAGAATGCAACACAAGTGGGGTGGCTTATGTCTCTTGG TCTCAATGGGTTTCTGTGATTCTTGTTTACACCTTTGTTTATCACATGATGGAGCCTCCTATGGAGTACTATGAGATTGT TGAGGATGAGGCTGAAATCAATGAAGAAGGGCCACTTAATGATATCAGTAGGCCACTCCTTGTAGAAGCTGAGTGGCCTG GCATTGAGGATAATGAGACTGAACATTCCAAAACACCCTTTATTGCAAGGATCTTTAAGAGCATTTCAGGTATGTCCTCT TCTAGTATTCCAGACTTTGACATCACAGCAGAAAGCAGTGGGAGCAGCACAATGTCCCTTAGGTGTTTAGCTGAGCCTAG AGTTGTTAGGAAGATCAGAATTGTTGCAGAGCAAACTCCAATTCAACAGATACTTCAACCCCCAACAATTGCATCTCTAC TAGCTATCATCATTGGCACAGTGCCTCAGCTGAAAACATTTTTCTTTGGAAATGATGCTCCAATGTCTTTTATGACAGAC AGTTTGGCGATTTTAGCCGGCGCAATGGTACCTTCTGTGATGCTTATACTTGGGGGCATGCTGGCTGAAGGGCCAAATGA ATCAACACTTGGAATCAAAACTACAATTGGAATCATTGTGGCCAGACTAGTGGTGCTTCCTCTCCTAGGAATTGGGATTG TGGTGTTGGCTGATAAGCTAAATTTCTTGGTTGAGAATGATGCAATGTTTAGATTTGTGCTTCTGCTGCAGTACACAACA CCAAGTGCCATTTTACTGGGTGCAATTGCAAGCTTGAGGGGTTATGCAGTAAGTGAAGCTTCAGCAATTCTCTTCTGGCA GCATGTGTTGGCTCTTTTCTCTCTTTCTGTGTACATTGTAATTTACTTTAGAATAATTGTCTAA
Protein sequence (LotjaGi5g1v0330800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGTLHKSNMRSNGEDLRTALQPLLKLLSLTVIGLLLANPKMQLIPKATFKLLSKLVFALFLPCLIFSELGESITLKKFV EWWFIPVNVLVSTALGCILGYIVVAICRPPPRFNRFTIIMTGFGNTGNLLLAIVGSVCHNTENSLFGKECNTSGVAYVSW SQWVSVILVYTFVYHMMEPPMEYYEIVEDEAEINEEGPLNDISRPLLVEAEWPGIEDNETEHSKTPFIARIFKSISGMSS SSIPDFDITAESSGSSTMSLRCLAEPRVVRKIRIVAEQTPIQQILQPPTIASLLAIIIGTVPQLKTFFFGNDAPMSFMTD SLAILAGAMVPSVMLILGGMLAEGPNESTLGIKTTIGIIVARLVVLPLLGIGIVVLADKLNFLVENDAMFRFVLLLQYTT PSAILLGAIASLRGYAVSEASAILFWQHVLALFSLSVYIVIYFRIIV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 7 | 446 | 440 | 4.7E-241 | ||
| PANTHER | 7 | 446 | 440 | 4.7E-241 | – | |
| TMHMM | 20 | 39 | 20 | - | – | |
| Phobius | 20 | 40 | 21 | - | – | |
| Pfam | 20 | 439 | 420 | 4.0E-88 | ||
| Phobius | 41 | 51 | 11 | - | – | |
| TMHMM | 52 | 74 | 23 | - | – | |
| Phobius | 52 | 70 | 19 | - | – | |
| Phobius | 71 | 81 | 11 | - | – | |
| Phobius | 82 | 104 | 23 | - | – | |
| TMHMM | 84 | 106 | 23 | - | – | |
| Phobius | 105 | 115 | 11 | - | – | |
| TMHMM | 113 | 135 | 23 | - | – | |
| Phobius | 116 | 134 | 19 | - | – | |
| Phobius | 135 | 153 | 19 | - | – | |
| Phobius | 154 | 173 | 20 | - | – | |
| TMHMM | 155 | 174 | 20 | - | – | |
| Phobius | 174 | 289 | 116 | - | – | |
| Phobius | 290 | 310 | 21 | - | – | |
| Phobius | 311 | 321 | 11 | - | – | |
| TMHMM | 321 | 343 | 23 | - | – | |
| Phobius | 322 | 342 | 21 | - | – | |
| Phobius | 343 | 353 | 11 | - | – | |
| Phobius | 354 | 377 | 24 | - | – | |
| TMHMM | 358 | 377 | 20 | - | – | |
| Phobius | 378 | 388 | 11 | - | – | |
| Phobius | 389 | 412 | 24 | - | – | |
| TMHMM | 390 | 409 | 20 | - | – | |
| Phobius | 413 | 423 | 11 | - | – | |
| TMHMM | 424 | 446 | 23 | - | – | |
| Phobius | 424 | 445 | 22 | - | – | |
| Phobius | 446 | 447 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi5g1v0330800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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