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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0331000 |
| Transcript ID | LotjaGi5g1v0331000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0331000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64807557..64809472) extracted from Lotus japonicus Gifu genome v1.2.
GCGTTTTAGAAATATTGATTAGGTTTTCCTTTTCCTCCGTTTTGGGTTTGGATTTCGCTCCGCCGTCCTTTCACTCGCTC AGTCCGCGCCTTTCCTCCACAGTTCTCGCCGCCGGCAACCGTGCGTGACGACTCTGTTCGAGTGACTCCCGTTGAGGTAA GCCAGAAATTGAAGCAAACTTGTCATTCCATATTTTGACTCTCAAATCACTATTGATTTTTCAATATAATTTGCTACTTT TGCTCACCATGAATAACAATATGCATGTCTTGTATTGAATTTGGAAGTTTGGAACAGAGTGTATAGTAACCTTAATTGCC TTTAATATTGTTTTTCTTTTTATCCCAACCCATCTTTTATTTTATTAAAATAGTTAGTTTAGTGATTTAGCATTGTGATG CAGAGCAGGACTCTCAAGTCAAATGTGATGATTTGCTTCCCACCATCTTTACCTAAATATGCATGAGCATGACCATTGGT TTTGAGTTGTGATGCAGAGCATGACTTTTGGTTTTGAAGATTGAAGCCCAACATCTCCCTTTCTCTTTCAATTTTCCCTA TATTTTGTCTTTTTTCTCAAGCATGAAGACTGAAGCCCAACATCTCCCTCAAGATTTGATAACTGAAATTTTATTGAGGT TGCCAGTGAAGTCTCTTATACGCTTCAAGGCTGTGTGCAAGTTTTGGCGGTCTCTCATATCGGATCCCCTTTTTGCAAAC TCACATTTTGAACTTGCTACTCCTAGACTCGTGTTCACTACTGATTCTGATTATGACATTCAAACCATCGACTTAGATGG ACGGCTTCACTCTAATCCTTTTTTTGAACCAATAAATCTTGACTTTTTGCACAGCTTTTTTACTTTTATTGAAGGTTCGT GTAGAGGCTTTCTTCTACTGCGCTATTATGAAAGCCTCCACTTGTGGAATCCAGCCACACGTGTCCACAGACCGATACCT TCAATTTCTGCAATCGAAGACCCGGGTTGTCAATTTGGTTTTGGGTATGATTCATCCAAAGATGACTACTTGGTGGTTAT AGTGTCTAATCATGTAACACCTGTGCAGTTTTTCTCATTAAGAGCTAATGTGTGGAAATATATTCAGAGTACCGATTTAC CTCCCTTGAACCTTTGTTATAATCATAGACCCGGGTTGCTCTTGAACGAGGCCATTCACTGGTTGGCTTGTGGCCATGAT AAAACAAAGAATGTTATTGTTGCTTTTGATTTATTGGAAAGAAGACTTCTAGAGATACCCCTACCAGATGATCTTGCCTG TAATCTTAAATCTTGTGCATTGTTGGCGCATGGAGGACTTTTGAGTGTTTATGTTAAGAGAAGTGACACACTTGAAATAT TTGTTATGGAAAAATACAAAATACAGTCTTCTTGGACCAAGACCATTGTTGTATCTTTGAGTGGTACTGACATTTTCTCA ATATGCTCTACAAAAAGTGGTGATATTGTTATGCATAGTATGACAGGACTTGAGAAGTATACTGATAAAGGAGAACAACT ACTGGAGCATTGCGTGGGTGGTGGTCTTCTAATTTCCCAAGTGTACATGTACACAGAGTCTATCCTTTCACTCCCTGATG CCAAAGGGCAAAGCTGAAAAAATGCCTGACATTAACAAATGAGAATGAAATTTGTATTGTGAAATCTTGTGACATTATGA TGCATTGAACTAGGGGAAGTGATTTAGGTAGAATAATGAAACTACCTCGAATTTTTTTATTTTGTTACAAGAGGAAGACT TCTTGCATATTGCCTTGAAATTTGAGGACACTGGTTAGGAATTGCTTATGGGTACATGAATTTGGCTTCTTTGTTCTACG TCATTGTTATAAAAAAAATCCATTTTACGTACTTCATTTATTTTCTTGAGTTAATAATCATTTTGGTGCCTTTAAA
CDS sequence (LotjaGi5g1v0331000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGACTGAAGCCCAACATCTCCCTCAAGATTTGATAACTGAAATTTTATTGAGGTTGCCAGTGAAGTCTCTTATACG CTTCAAGGCTGTGTGCAAGTTTTGGCGGTCTCTCATATCGGATCCCCTTTTTGCAAACTCACATTTTGAACTTGCTACTC CTAGACTCGTGTTCACTACTGATTCTGATTATGACATTCAAACCATCGACTTAGATGGACGGCTTCACTCTAATCCTTTT TTTGAACCAATAAATCTTGACTTTTTGCACAGCTTTTTTACTTTTATTGAAGGTTCGTGTAGAGGCTTTCTTCTACTGCG CTATTATGAAAGCCTCCACTTGTGGAATCCAGCCACACGTGTCCACAGACCGATACCTTCAATTTCTGCAATCGAAGACC CGGGTTGTCAATTTGGTTTTGGGTATGATTCATCCAAAGATGACTACTTGGTGGTTATAGTGTCTAATCATGTAACACCT GTGCAGTTTTTCTCATTAAGAGCTAATGTGTGGAAATATATTCAGAGTACCGATTTACCTCCCTTGAACCTTTGTTATAA TCATAGACCCGGGTTGCTCTTGAACGAGGCCATTCACTGGTTGGCTTGTGGCCATGATAAAACAAAGAATGTTATTGTTG CTTTTGATTTATTGGAAAGAAGACTTCTAGAGATACCCCTACCAGATGATCTTGCCTGTAATCTTAAATCTTGTGCATTG TTGGCGCATGGAGGACTTTTGAGTGTTTATGTTAAGAGAAGTGACACACTTGAAATATTTGTTATGGAAAAATACAAAAT ACAGTCTTCTTGGACCAAGACCATTGTTGTATCTTTGAGTGGTACTGACATTTTCTCAATATGCTCTACAAAAAGTGGTG ATATTGTTATGCATAGTATGACAGGACTTGAGAAGTATACTGATAAAGGAGAACAACTACTGGAGCATTGCGTGGGTGGT GGTCTTCTAATTTCCCAAGTGTACATGTACACAGAGTCTATCCTTTCACTCCCTGATGCCAAAGGGCAAAGCTGA
Protein sequence (LotjaGi5g1v0331000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTEAQHLPQDLITEILLRLPVKSLIRFKAVCKFWRSLISDPLFANSHFELATPRLVFTTDSDYDIQTIDLDGRLHSNPF FEPINLDFLHSFFTFIEGSCRGFLLLRYYESLHLWNPATRVHRPIPSISAIEDPGCQFGFGYDSSKDDYLVVIVSNHVTP VQFFSLRANVWKYIQSTDLPPLNLCYNHRPGLLLNEAIHWLACGHDKTKNVIVAFDLLERRLLEIPLPDDLACNLKSCAL LAHGGLLSVYVKRSDTLEIFVMEKYKIQSSWTKTIVVSLSGTDIFSICSTKSGDIVMHSMTGLEKYTDKGEQLLEHCVGG GLLISQVYMYTESILSLPDAKGQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 2 | 52 | 51 | 11.432 | ||
| PANTHER | 3 | 336 | 334 | 3.6E-86 | – | |
| PANTHER | 3 | 336 | 334 | 3.6E-86 | – | |
| Gene3D | 6 | 44 | 39 | 4.0E-10 | – | |
| Pfam | 7 | 43 | 37 | 3.3E-8 | ||
| SUPERFAMILY | 7 | 74 | 68 | 3.53E-15 | ||
| SMART | 8 | 47 | 40 | 3.8E-8 | ||
| TIGRFAM | 99 | 300 | 202 | 1.0E-23 | ||
| SUPERFAMILY | 109 | 297 | 189 | 9.68E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0331000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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