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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0332200 |
| Transcript ID | LotjaGi5g1v0332200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat protein 5; TAIR: AT3G04240.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8N0Z6|TTC5_HUMAN Tetratricopeptide repeat protein 5; TrEMBL-Plants: tr|I1LEN6|I1LEN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0332200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64918878..64926876) extracted from Lotus japonicus Gifu genome v1.2.
CAAAATAAAAAATACCGTGATGTGAGTATTTTCGGTTCGAACAAGATTAAGTAAGAAAAATATATTGGTAAACAAGCTGA AAAAAAAAAATCAAGGGATTACAGGGGAAACCCACGCTACTGGCACATTCGCACTCCATCTCTATCACCTCACTCACTGT CGTGATCATCACCAAATTCAAAACCCAGCGAGCGAGCGAGCTCATTCAGTTGAGTCGAGTAGCGATGAGCAATCGAGGTG AAGAAGAAGAAGAAGAAGAAGCATTATCGAGAAGCGCAAGAGCTGCAGAAGATCTCTACCACCTTCGAGACACTTTTTTC CCACCCAACCCTCATGACAGAATCTCGTCGTTGCAGCACCATTCCGATCTCGCTCTCAATCTCCTCGATTCCATTCCTCC AGGTCACTCACTCACTCAATTCTAATCAATCAACGCTAGCGTTTTACTACAGCATTTGAAATTTCAGCTTTAACGTGCTT TGCTAGTTTACGAAATTGTTCCCCCTTTTGGGGTGTTTGTTTGTGTATGATTACTACAATACTTGAAAAAATTGAATGTG TAGCATTGGAAGTGTGATAAGCTAGATTACCCCCTAATGAATGTGTGAAAGGGTTTTGACTTTTGAAACTTGCTAGGTTT TACACACCAGAAAAGAGGAGCATGATTAGGTTTTCAAATTAAGTAATGATTCGTGAGGCGTTTTATGGTTGTACAGTTAG TTGTTGCATTGGATCAATTTTGGGGGAGGGGGAGAGCCCTAATCCGTAATTCGAATTCAGTTGCTATTTTGTATATGGCT GAGTTCACTCAAATTACGGATGGAGCGGTTATTTCTAAAGAAAGGTTGCTACATTGGGATAGGAAAATCCAAGGTGGTGG AAGCCCAAGTGGTTGATGGTGTCTTAACATAAATTCAACAAGTTGAGATTGACCAGCCTCAAAAGAATGGAAAATAAGAA ATCGAGATGCAAGTAACTAGGTAGAGGATTAGTGGGGGGTGTTTCCAAATATTTATATAGCGATGTTTTATAGTGTATGA AAAACTAGTTGCTAGTGACATGATATAAACCTTGATATGCTTGCTGAGAAACTGCTGTTATTATTATTTACATTTTAATG TAAACAATTTTGTTTTCATGTTGCTTTTCCTCATTGAGCTGCCTCCGACTCACAGTTACTTAGAATGGCATCTAACACTT TTTTGACCACAAAATGAGCAAATATTTGATAAATGGCTCTTGGAATTTAAAATGTATTCCCATATATCCCATTTGTTTCA ATGAAGTTTGTCATTAAAATTTTGTATCCTTTGCCAGAACAAAGAAAATCACCGATGCAACGTGCAACATTTGAATATCT TAGAGGGAAGGTGTTGGATGTATTTCCTGACTACAGGAAAGACGCTGAGGATCACCTATCGAAAGCTGTAAGCAAGATTG AAGTTGTTAGTTTCTGTGATTTAGTGTGCCTTTCTATTGATGATTAAGTGGTTGATTGTAGTTGGCTCTTCTATGGTCCA GGTTAAGTTAAATCCATCTCTTGCAGATGCTTGGCTATGTTTAGGTAACTGCATATGGAAGAAGGGAGATTTGCCTGCTG CAAAAAACTGCCTCAGTCTTGCATTGAACAAGGTTAGAATTGATAGTATATTTTTGTGAAAGATACTTGATGGTATCCCA GAGGATGATGCATTGGTGTACAAACCAGCCAAGCCAAACAGCTGGGTAACTGCCTGATGGCATGTCACTATTAATTAGTT GCAGAACTGCTGAATGCAGTCAGTTATGATTACAAATTAACTACTGTCAGTTGTTTATTTGGAGTCAATGTGATAGTAGG GTGTGTAATAATATATGCAACGTTGTTATTATGTATTGTGGACAGAGAATAGTCTGCAGGAAACTTTGGTCTCTGGGACA GCAAGGATATTTCTGTATAGTGTGTGATTTCTGTCAGTAATATAATTATTTTGTTTATCTTTGGTTAGCAATTCTATAGA GCATCAAAGTTTCAAACACATACAGAATCAGGGGTTAGTTGAAATTTGTATAACGGGTTATTGATGAGGAATTTGGGTAG ATTCCATGAGGTTCTAGGTGATGAAAGTTCAGAGGTTGTAATTAAATGTTGGATATAATTTGGGGAAAATATATTTATTG CTGACGTTAAATATTTTCAATATTTTGACACATAGTGAAAATCTACTTGAGGCAATTACCTTCTTTTCCTGAGTTTCAGT TTCACTTTGCTCTGGTTGAGGTTCTGTCGTTTGTTGTGAACTGATGAGTGATGATATATATTGGTTATTTATGCAGGGTC CTAACAAAAAGATTCTTTGTCAATTATCAATGCTTAAAAGAAAAATGTCTCAAGGTAAGGGATTCACTTTTGCTTTTTTA TTTGTTTAAAGATCTATTGTTTTTCATTGTTCTTAATTTCCTTAGGCATTGTAACTTTGTTTTTGGGCACTTATCCATGT ATATAACAAGCCTTTTCTTTCCACATTTGTCCTTTCTATGTTGATTTTGGGAATCTTTATGCTAAATGATCAGATGGTTT TGGTTTTTTAGAGTGGTTAATTCTTAGTGCATTCTTTATGATGTGGTACTAGCTAGTAGCTAGTGAAATTCTCCCTCATT CACAAGAGAAATTGTTATAAAGTCCTTCTCGAAAATTTAGAATCTGAGAAAGTTTCTTGTTTCTTCCCAGAGGAACAATA TGTTTTGATTGCTTCAACATATACGAAACTGCTTTATTTGTAATCTCAAATGTGATAATTATGAGGTATTGACGCTTGGA GATATGGATTGCATTGCTACAAGAGGATTGAATTACACAAGTTGAATGACTGAACGAACATAAAAGTGAGATAGAAACTT TTGGTGTTGAGGTGCAGAATGTACTTGCAAGCAGTTGTTTTAGCTTGTTCTATAATGCTCTAAAATTTGACCATGCATAC TACTAGTATGCATAAAAATGAAAATCTGGGAAGCAAAGTGTGATGACAGAGGGAAATGGAGCAGGTAATAATGGGTAAAA TAAGGAAAGTGGAGAGAAAAGTAAATTGTAATAACTATTCATAATAGCTGTATATTCACGTTTATAAGGTTCTTAGAAAA TGTCAATAGAATAGAGTCCATAGACTTTGTATTATCTGTAGGAAATTAGAAACAGAAAACTACCTAATAGTAGAGATTTA TATTGTGCCTGCTATGAAATCAGGTGCGGAGAATCAGTCAGAACTTGTTGAAGAAAGCATTGAACATGCCAAGGAAGCAA TCACTTTGGACGTCAAGGATGGGAACTCTTGGTGTAAGTTTTAAAATTAGTGATTACTATGATATGCCTAAAAAATGAAT CGTGCTTGCTATTGGATAATATTTAGCATTTAATGAGGATGGTTGTTGTAAATTAGCTGGTAATTAGGCTGTACATTTAG ATTTAGTTACTAATAACCTCTTGATTGCTCCTTGATTAATTGAAATTATACCATAAATAAGGGATTATGTGCAGCCTAGA CACAAATTCTCTCAAACACTATTTTAACATCCCACTAGCCTGGACGTTATTATGTAAAGTTTATACCGCCTTGACGGCTT AATGCAATGAATGCAAGTTTTGTTTTGTAGAATACAAGAAAACTGTTTGTCAATATTTTAGTCAAATGACATGATAAATC ATTTCAGATTTTTAGAGAATGATTTATCCAGACAGAAGGAATTTCAAATTCTGTGTTTTGAGTAAAAAATCATTTGAAAA AAGTACAATTTTGAAAATGCCTGTTTCAGGCTTTCGCTATCCAAACAAAGAACTTCATACTACTTACATATTTTATGTCC TCTTTAGAACTTCATTTACTTTTAAAGTTTCCTCATTGAAAGTTGAAACACACGTATTTATTTTCCTGAAATGAACAGTG TTGGTTGAAATTGAATATGAGAAGCTGTCCTACTTGTACATAATACTTTTAATGTTTGTCCTTGAAAATCGTTTTGTGAC TAAAATATAATATCATATGTGAGAATTGAGAAAACAAATCAACATTTAAAATTTCATTCTCGTTTTTTATTTTCTGGAGT TAAATATTGTTTGTTTTAAAATAAAATGTGATATTTGTGTCTTTTTAACATCATCTTCTCTTTTTTACAGATAATCTTGG AAATGCATACCTTACAAGTTTTTTTGTCACTGGAGCTTGGGATCATGCCAAACTTTCACATTCTTTAAAAGCATATCAAA ATGCTGTGAGTATAAACAGAAATGATTTAGAATTTAGCAGCAATAGTTTGCATATGGTAGAAACACATCTTCATTTTGGT TACTTTTATTATACTTGTTTCAACATGGAGATGGTTACTGTGTCTAATATTTATTGGTGAATAGGCTTATCATTTACACT TGCGGAAGACCTAATGTTTGGTTAATGTGTTCCAGGAGAAAGATGAAAGAATGAAGTCCAATCCTGACCTATATTTTAAT TATGCCACCGTAAGTTGCATTTTGATCCTTATATTGTATGTCAATATGTTCAAGCCTTCATTAGAGAAGACTTTGGAGAT TGTATTAGTTACCTTACTTTTCCCCCCCTATATATTTGGCGTCATATTTCACTGTTCTCACCCTGCAGGAAATAATAGGA AATAATGGTATCTAATCGTCAAAATCATATAGCAGTGCATGCTATACATATTAGGCATAATAGTATATTGGGCGGAGTCT TGCATGTTTGTCTAAATAGTTTGTTACAGGTTAACAAATATCTAGAGAACTATGAGAGGGCCCTTAGTGGATTTGAGGCT GCTGCTCTAAAGGATCCAGGTCTCAATGCTGCAGAGGAGGCTCAGAAGATAGTCAACTTACTTGACAAGGTGGACAATCT TTTGAGGGTAATGATATTTTCCCTTGGCTATGTAGTAGCAATCATATTTTTCAGTAGTTTGGTATCTTACATGGAGGGTT CTTTTAATGACAGATAGATAGTAAACGCAAGAAACATTAAAATCAACTCTGCCTCTCCCCCAAGTATCATCAGTATTTTT ATTATGTGCAGGGACATGTAAGAGCTAAGAGAATAGCATCTTTGGTATCATCGTTGGCTGCTGTTAGTTGTAAGCTCCTT TTTTACCTATAGGTTTCAGTTCATGGACCATGCTAAATTTTGATGAGCTTGTGTGTATGAATCTTTATTTCTTTTTCCCC CAATACTAACATACTGACTAGATTCATTTCTACCTTCTGGTGTAAGTAAAATCGTCACACAAAGGAGTTACCATTGACCT TCTGTCAGAGGGTCTGAATAGAGCTCTAGCAGTAGAGGGGAAGGTGCTTTTCTTTGTTAGGAGTGAGAGTGTTGCTCCCC TGTAAGTCCTCTACCCCAGACAAGTGTTTTTTACTATTGATAATCTTTTACACAAGCAGTGATCCATTCTCCTGTATTTG TACTGGGCAGTTTTAGAAGTAATGGAGTGAGTTGATATCTATCAAATTGGTATATTGCATCCAGTGCATTAAATAATCCC TCATCAATATGCCTAAACTATGCCTTTTGCTATTTGAACTGTAAATGTCATTGCATTCTGTTGGATAACTTGTTTTGCAT TATATGACTGGATTTTCTTTGCTCTTTTTGACCTTGCTGTTTTCCATGTGTATTGGGTTGGATGAAGGGAAATAATGTTT GGTTGGGAAATGGATCTTTTCAACTAAAACAACGGGCGGGCACTAGGGCCATAAATATTGTTTCAGAGGGGGCAAAAATG GTTAGTAAAACTATAAACAATTTAAACATATTGATTAAAATAAAGTTAAATGGAAAAATGTATTTATATTTCACAATGGA TTTAATGCAACAAAGCAGAACCTTTACTGGTTACAGAGTTTGTCCTTCTTTGACTGGTTCTGTTCCTTTAACTTCACCAA TGCATAATAAATTGGATTAAATAAGATCAATGCAGAAGAACATACTACATCCTTTAGCACCATGCAGTCATGCAGCAGTG ACGGCAATATTCTTTCAATCTGATGATGGGGCCATTTTAGTGTTGGTTTTGTTATACATTGGATGCTGATAGGAATAACC ACCTGAGATCATTGTACTCATAGTTCATTTTCCATAAATACTCCGCTGATTGTTCACAATAACAACTTTCAACCATGTTA CAAGAAAATATCATTAATGTTTGTCTGCGTGTAATTTTTCACAGAAAAATGTGTTTCCATGACCTTTATGTTAGTATCTT GAGAATAGTTGCAATGTATGCAGAAATCGGATTCAGATGATTTGTTCTTCTCATTTTGCAGATACTATGTGCTTTGTGAT TCAAATCAAACTTGCTTTGTTCTCTCAGTTTATGGTGTACGTTTTGATGTGGTAAGAACTGCTCCTGATGTTTTATGTCA TCTTCTCTTCTACTGTCCCACACTCCCACTCATGTTTTTCGAAAGTTCAAATTCACCGGTCCTAGATATGTTAAGTATTA CAAAATAGTTGCATGGTTCCTTCTTTCTCATCCCTAATAATACTTCTTTACATCAAAAATCAACGGGGAGAGTAGTAGTA GTCTATATGAAGGGATAAAAGAAATGACCATAATAGTTCTCATTTAGAGGTTGTCCAGCTGATATAGACCCCATCAAGTT GTTGTAGATAAATCATTCAAAACATTATATATTCTTCTCTCTCCATTTAAATGAGTGCTTTTTGCTGACTAGAAGTTTGA TGTAGTTTGTTATTTTTCTCTTTTCTATTGTTATGGTTCATCCATTGAAGAATTATATTCTGGTGTTTATTGAGCTCTTG TTATCCAGATTAAAGAAGGAGATCAGCTAACATTGCTCGACCCTTTATTTCGGGATGTTGATTTGTCTTGGAAGGAGAAG GTACCCTTTCATCAAAGATATTTTGATTCAATGCAGTTATTAGCTAATTCCTCAACATATCTTTGTAGTAGAAGTAGAAC TAGTCATTCTGATTAAGGGTTTACTTTGTTTTATGCATTAAAAATAGCATTATCAGTTCAAGTCTATACGCCTGGATTTC TATGAACAAGTGCTTGTTAATGGAAAAGCTCTGACTCCTCAACAAGCTATCCGTTCATCAATACTTGCACAACATAAACC TTGAACAGACCACTGCTAAATAGATTCGAGCTTTGCTTTTGGTTGTCTTTGGCTGTTGGATGCTGTATTGAGTTGGTAAA TAGATTAGTTGTTACAGGTATACAGGTGAATTTCTTGCCCATGATATGGGTCACAATCAGGGAATAGTAAAATATGAGTT TTGCATTTGTTAAATATGATGGTTTTGCATTTGTTAAATATGATAGTTTCAAGGTTCTCATTTTATCTTTTTGGTGCTTC AATAGCATGTTTATGTAATGATCTAGTTTGTATGTTTGTATCAAAGATAAACTATAATCTTTGCTCATCATCCTTTTAAA ATTCTTCCATTTCGTCAAGGAAAACAATGATATCTGCTTAATATTTTTTCAATTTTACTCAATATGCGAATTATCATATG TCTCGTCCATTAGGGGTTCAAAATCCATTAGAGGATCCTTGTGGCAGAGTTAGGGTACGCAGACTCAAGTAGATGCCTAA GCGGGACTAGTCTCACCTTTAGCAAAATTAATGATAATAAAATGAGAGAATACCTAAATTATTCGGATTTGCCAATACTA GGAATGATTTCATTGTTCTTTTTTGGAAGAAAAATAAAACTATTCAACGGTTCAATTTAAGTGATAAGTTATTTGGTAAT AAAAAAAGTTTATGGAGAATTCGTTTGAAAAATTTGTAAATTGGGGGAACCAACAGAAAAAACCACAAATTTGTTAAAGG ATAAAAATATATATTTAAATCCCACTATTTTCTTTGTTGAAGAGTTCTAAAGAGATCGGAGTGTTGTACCTAAAAAAATG ATGGAAGTAGGCCAAACTGCTGACAAGAGTTTGCGGGCTACATCTAACCTAGACCAGATCAAACTAATAAATAAACAAG
CDS sequence (LotjaGi5g1v0332200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAATCGAGGTGAAGAAGAAGAAGAAGAAGAAGCATTATCGAGAAGCGCAAGAGCTGCAGAAGATCTCTACCACCT TCGAGACACTTTTTTCCCACCCAACCCTCATGACAGAATCTCGTCGTTGCAGCACCATTCCGATCTCGCTCTCAATCTCC TCGATTCCATTCCTCCAGAACAAAGAAAATCACCGATGCAACGTGCAACATTTGAATATCTTAGAGGGAAGGTGTTGGAT GTATTTCCTGACTACAGGAAAGACGCTGAGGATCACCTATCGAAAGCTGTTAAGTTAAATCCATCTCTTGCAGATGCTTG GCTATGTTTAGGTAACTGCATATGGAAGAAGGGAGATTTGCCTGCTGCAAAAAACTGCCTCAGTCTTGCATTGAACAAGG GTCCTAACAAAAAGATTCTTTGTCAATTATCAATGCTTAAAAGAAAAATGTCTCAAGGTGCGGAGAATCAGTCAGAACTT GTTGAAGAAAGCATTGAACATGCCAAGGAAGCAATCACTTTGGACGTCAAGGATGGGAACTCTTGGTATAATCTTGGAAA TGCATACCTTACAAGTTTTTTTGTCACTGGAGCTTGGGATCATGCCAAACTTTCACATTCTTTAAAAGCATATCAAAATG CTGAGAAAGATGAAAGAATGAAGTCCAATCCTGACCTATATTTTAATTATGCCACCGTTAACAAATATCTAGAGAACTAT GAGAGGGCCCTTAGTGGATTTGAGGCTGCTGCTCTAAAGGATCCAGGTCTCAATGCTGCAGAGGAGGCTCAGAAGATAGT CAACTTACTTGACAAGGTGGACAATCTTTTGAGGGGACATGTAAGAGCTAAGAGAATAGCATCTTTGGTATCATCGTTGG CTGCTGTTAGTTTAAAATCGTCACACAAAGGAGTTACCATTGACCTTCTGTCAGAGGGTCTGAATAGAGCTCTAGCAGTA GAGGGGAAGGTGCTTTTCTTTGTTAGGAGTGAGAGTGTTGCTCCCCTATACTATGTGCTTTGTGATTCAAATCAAACTTG CTTTGTTCTCTCAGTTTATGGTGTACGTTTTGATGTGATTAAAGAAGGAGATCAGCTAACATTGCTCGACCCTTTATTTC GGGATGTTGATTTGTCTTGGAAGGAGAAGCATTATCAGTTCAAGTCTATACGCCTGGATTTCTATGAACAAGTGCTTGTT AATGGAAAAGCTCTGACTCCTCAACAAGCTATCCGTTCATCAATACTTGCACAACATAAACCTTGA
Protein sequence (LotjaGi5g1v0332200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNRGEEEEEEEALSRSARAAEDLYHLRDTFFPPNPHDRISSLQHHSDLALNLLDSIPPEQRKSPMQRATFEYLRGKVLD VFPDYRKDAEDHLSKAVKLNPSLADAWLCLGNCIWKKGDLPAAKNCLSLALNKGPNKKILCQLSMLKRKMSQGAENQSEL VEESIEHAKEAITLDVKDGNSWYNLGNAYLTSFFVTGAWDHAKLSHSLKAYQNAEKDERMKSNPDLYFNYATVNKYLENY ERALSGFEAAALKDPGLNAAEEAQKIVNLLDKVDNLLRGHVRAKRIASLVSSLAAVSLKSSHKGVTIDLLSEGLNRALAV EGKVLFFVRSESVAPLYYVLCDSNQTCFVLSVYGVRFDVIKEGDQLTLLDPLFRDVDLSWKEKHYQFKSIRLDFYEQVLV NGKALTPQQAIRSSILAQHKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 276 | 272 | 7.6E-95 | ||
| PANTHER | 13 | 421 | 409 | 6.4E-159 | – | |
| PANTHER | 13 | 421 | 409 | 6.4E-159 | – | |
| SUPERFAMILY | 74 | 248 | 175 | 6.07E-19 | ||
| ProSiteProfiles | 87 | 137 | 51 | 10.17 | ||
| SMART | 104 | 137 | 34 | 0.28 | ||
| Coils | 151 | 171 | 21 | - | – | |
| ProSiteProfiles | 224 | 257 | 34 | 7.778 | ||
| SMART | 224 | 257 | 34 | 61.0 | ||
| Gene3D | 277 | 420 | 144 | 6.5E-34 | ||
| Pfam | 303 | 412 | 110 | 1.1E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0332200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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