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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0341600 |
| Transcript ID | LotjaGi5g1v0341600.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plasma-membrane choline transporter family protein; TAIR: AT1G25500.2 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|Q4WYG7|PNS1_ASPFU Protein pns1; TrEMBL-Plants: tr|I1LEY5|I1LEY5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0341600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65882961..65884020) extracted from Lotus japonicus Gifu genome v1.2.
ATTGAGGCATGGTTCTTTGCTCATGTTCTTACAGATTGCTGTTAATGGCAAAAGCTTCAACCATTCCGCTAGAGATGCGT GGGAGTTATTCCAGTCAACTGGAGTTGAAGCTCTTGTGGCCTATGATTGTTCAGGTGCTGTCCTGCTCATGGGCACCATT TTTGGTGGGCTGATAACTGGAACTTGCTCTGGGATTTGGGCATGGGTTAAATGGAGTGACAGAGTTATTATGATTGGGTC CACGTCCATGCTGATGGGGATGGTACTGGTAAGTTTATAATCTCCTTGTTGGGGCTTGGACTACAAGCTTTTGGTTGAAC TTTTTACAGTAATGATACTCAGATACCCATTTTTCTCTCTCACACACATTTCTTGCTGGGTTTTTGTTGGATGTCTGCGA ATTATTTTCCAATTCCTTGTTCTCCAAAATTGATGAGGAACACTGATAGCATGTTTGGACTAACTTCTCTTTCATTAGAA TTAATTCTGACACCCAGAAGCTACTTACAAAAGCTTCTCCCAAGAATTAATTTTGGCTTTAGAATCAATTATAGAAAGAT TTCCGAGCATACATTGAATTGTTATTATTATAATTACTCCGGTCCTTTGCATTTCTCTATTAATCAAAGACATTGATGTT GGCATGCCATGATAATCATTCCCTGACATATGTTGACTATAAAAAATATTCAAACTGTATTGTTGAATTTTAAGTTTTTT ATAGGCACATGGCACAGCTAAATGATGGCCATTCCTTACATATATCTATTGTTATATCTAAGAATCAGTCAAGCTGTATA ATGTAGAACATGTGATTTTTGTGCATGTGACATGAAATACATAATAAAATTTTCAGGTTGGGTTGGCAATGGTAGTGGTG GAAAGTGCTGTTACATCCATATATATCTGCTATGCAGAAGACCCCTTATTGATTCATAGATGGGACGCTGACTTTTTCAA CCAGATTTCTGAGACACTGCATGAACGACTTCAATATAGGAGTGCTCGAGGAAGGGAAGTTTTGACCCACTCGCGGCTCC AAGAAAACGCCTCTATTTGA
CDS sequence (LotjaGi5g1v0341600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTTACAGATTGCTGTTAATGGCAAAAGCTTCAACCATTCCGCTAGAGATGCGTGGGAGTTATTCCAGTCAACTGG AGTTGAAGCTCTTGTGGCCTATGATTGTTCAGGTGCTGTCCTGCTCATGGGCACCATTTTTGGTGGGCTGATAACTGGAA CTTGCTCTGGGATTTGGGCATGGGTTAAATGGAGTGACAGAGTTATTATGATTGGGTCCACGTCCATGCTGATGGGGATG GTACTGGTTGGGTTGGCAATGGTAGTGGTGGAAAGTGCTGTTACATCCATATATATCTGCTATGCAGAAGACCCCTTATT GATTCATAGATGGGACGCTGACTTTTTCAACCAGATTTCTGAGACACTGCATGAACGACTTCAATATAGGAGTGCTCGAG GAAGGGAAGTTTTGACCCACTCGCGGCTCCAAGAAAACGCCTCTATTTGA
Protein sequence (LotjaGi5g1v0341600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLQIAVNGKSFNHSARDAWELFQSTGVEALVAYDCSGAVLLMGTIFGGLITGTCSGIWAWVKWSDRVIMIGSTSMLMGM VLVGLAMVVVESAVTSIYICYAEDPLLIHRWDADFFNQISETLHERLQYRSARGREVLTHSRLQENASI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 38 | 38 | - | – | |
| PANTHER | 2 | 144 | 143 | 5.9E-88 | ||
| Pfam | 2 | 105 | 104 | 1.4E-17 | ||
| PANTHER | 2 | 144 | 143 | 5.9E-88 | – | |
| Phobius | 39 | 61 | 23 | - | – | |
| TMHMM | 39 | 61 | 23 | - | – | |
| Phobius | 62 | 67 | 6 | - | – | |
| TMHMM | 68 | 90 | 23 | - | – | |
| Phobius | 68 | 90 | 23 | - | – | |
| Phobius | 91 | 149 | 59 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0341600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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