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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0341600 |
| Transcript ID | LotjaGi5g1v0341600.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plasma-membrane choline transporter family protein; TAIR: AT1G25500.2 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487; TrEMBL-Plants: tr|I1LEY5|I1LEY5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0341600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65882961..65885635) extracted from Lotus japonicus Gifu genome v1.2.
GTGGAAGAATCGCGGCCGTGGCATGATGTTTTCTGGTTAGGAATATTTGTAATCCATTTGATTGGGCTGGGGTTCCTTCT AGGGGTTCTTGGCCTTAACAGATTTGAGCAAGAGAATAGACTTAACATTGATAAGTACACGTCTCGGTTCTCTGAGAATG AGGCTGGGTTGACGGAGACTTACTGGCCGCTCTATGCCGCTGCTGCTGGGGTTGGGACTGTTCTTGGATGGATTTGGTTG TTGTTGTTGGGTTCCCAGGCTACTCAAATGATGAAGTTTTCTGTCCACATCCTCACCACTTATCTTGCTGTCATCAGTGT TCTGTGTTTCTGGGCTAAGCAGATTTTCTGGGGGGTTGCTTTTGGTATTGGAGCTTCTCTGCAGTTCTTGTATGTCATAT CCGTCGTAGACAGGTATAGACCTGAAATCGAATTGTCCTTTACATGTTTTATGTTGGATTGAGTTTAAGTTGTTTTTCTA TTACTGAGTGATTGCATAAAGCGAGTCATATTGGTGGTAGATAAGGAATAGGATAGGCCTTGAATGTTAGTATAAGTGTA AGAATATTTGGTCGGTTTCACTTTTTTTGCATTCTGTTTTAATGGAGTCTATAAAGGTTCCCTGTGGCTTCTTTTCTTCT CCAGACTTCCATTTACAATGTTAGTTCTGCAAAAAGCTGTGAAGATGGTTTGGAGTCTTCCTGAGGTTATGAGAGTGTCA TACGCATTTATGCTTGTTGTGCTTTTATGGATGGTGTTATGGTCATTTGGAGCAGCAGGTGTTGTGGCTTCAAGCATGGG TGATGGCGGACGCTGGTGGCTTCTTGTGGTGAGCTGGCAAGTTTTGCTCTTCATTCTTACTGTACTTGGTTGGACTGGTT ATGGAAGCATGTTTCTTAAGCTTCCTCATTCGATTATGCTGATATTGCAATTCATTCTTGCAGGTTTTCTCTGTAAGCTT ATTTTGGACAGGCGCAGTACTCTGTAATACTGTACATGTTATAGTGTCTGGGATGGTGTTTCTTGTTCTTCTCCATGGCG GTAGAGAGGCAGCATCGATTCCTGCTAACTCCTTAAAGAAATCTTTACAGTCTTCTTTAACAACATCTTTTGGCAGCATT TGCTATGGCTCGTTATTTACTGCTGCTATTAGGACACTACGGTGGGAGGTAACAGATCATTTGCATTTTGCGACTGATTT GAAGTTCATTTCTTTTATTCATGAAGGCTTTTTCTTCTTTCAGATTCGTGGAATTCGGTCAAAGATTGGCAATAATGAGT GTTTGCTTTGCTTTGTTGATTTCCTTTTCCATCTTGTGGAGACTCTTGTTCGTTTTTTTAACAAGTATGCCTATGTTCAG GTAAACTTCGGCGTCCAAAGTCCATGTTATTAGCCAGTTCTCAATATGATATATATATATATATATATATATATATATAT ATATATTGCATCTTCTACATGACAATCAAACATGAAATATGGTTGATTTTCCTATAGTTTAATTTACACTGGATGTGTTG TACTCTTTGGATCACCAGAAAGAGTTCTATGATAATTTAAATATAGCATCTAGACAACTTTGTTGAAATTTGGTGAATGC ATTGGTTCTTGCAAAATTGAGGCATGGTTCTTTGCTCATGTTCTTACAGATTGCTGTTAATGGCAAAAGCTTCAACCATT CCGCTAGAGATGCGTGGGAGTTATTCCAGTCAACTGGAGTTGAAGCTCTTGTGGCCTATGATTGTTCAGGTGCTGTCCTG CTCATGGGCACCATTTTTGGTGGGCTGATAACTGGAACTTGCTCTGGGATTTGGGCATGGGTTAAATGGAGTGACAGAGT TATTATGATTGGGTCCACGTCCATGCTGATGGGGATGGTACTGGTAAGTTTATAATCTCCTTGTTGGGGCTTGGACTACA AGCTTTTGGTTGAACTTTTTACAGTAATGATACTCAGATACCCATTTTTCTCTCTCACACACATTTCTTGCTGGGTTTTT GTTGGATGTCTGCGAATTATTTTCCAATTCCTTGTTCTCCAAAATTGATGAGGAACACTGATAGCATGTTTGGACTAACT TCTCTTTCATTAGAATTAATTCTGACACCCAGAAGCTACTTACAAAAGCTTCTCCCAAGAATTAATTTTGGCTTTAGAAT CAATTATAGAAAGATTTCCGAGCATACATTGAATTGTTATTATTATAATTACTCCGGTCCTTTGCATTTCTCTATTAATC AAAGACATTGATGTTGGCATGCCATGATAATCATTCCCTGACATATGTTGACTATAAAAAATATTCAAACTGTATTGTTG AATTTTAAGTTTTTTATAGGCACATGGCACAGCTAAATGATGGCCATTCCTTACATATATCTATTGTTATATCTAAGAAT CAGTCAAGCTGTATAATGTAGAACATGTGATTTTTGTGCATGTGACATGAAATACATAATAAAATTTTCAGGTTGGGTTG GCAATGGTAGTGGTGGAAAGTGCTGTTACATCCATATATATCTGCTATGCAGAAGACCCCTTATTGATTCATAGATGGGA CGCTGACTTTTTCAACCAGATTTCTGAGACACTGCATGAACGACTTCAATATAGGAGTGCTCGAGGAAGGGAAGTTTTGA CCCACTCGCGGCTCCAAGAAAACGCCTCTATTTGA
CDS sequence (LotjaGi5g1v0341600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAAGTTTTCTGTCCACATCCTCACCACTTATCTTGCTGTCATCAGTGTTCTGTGTTTCTGGGCTAAGCAGATTTT CTGGGGGGTTGCTTTTGGTATTGGAGCTTCTCTGCAGTTCTTGTATGTCATATCCGTCGTAGACAGACTTCCATTTACAA TGTTAGTTCTGCAAAAAGCTGTGAAGATGGTTTGGAGTCTTCCTGAGGTTATGAGAGTGTCATACGCATTTATGCTTGTT GTGCTTTTATGGATGGTGTTATGGTCATTTGGAGCAGCAGGTGTTGTGGCTTCAAGCATGGGTGATGGCGGACGCTGGTG GCTTCTTGTGGTTTTCTCTGTAAGCTTATTTTGGACAGGCGCAGTACTCTGTAATACTGTACATGTTATAGTGTCTGGGA TGGTGTTTCTTGTTCTTCTCCATGGCGGTAGAGAGGCAGCATCGATTCCTGCTAACTCCTTAAAGAAATCTTTACAGTCT TCTTTAACAACATCTTTTGGCAGCATTTGCTATGGCTCGTTATTTACTGCTGCTATTAGGACACTACGGTGGGAGATTGC TGTTAATGGCAAAAGCTTCAACCATTCCGCTAGAGATGCGTGGGAGTTATTCCAGTCAACTGGAGTTGAAGCTCTTGTGG CCTATGATTGTTCAGGTGCTGTCCTGCTCATGGGCACCATTTTTGGTGGGCTGATAACTGGAACTTGCTCTGGGATTTGG GCATGGGTTAAATGGAGTGACAGAGTTATTATGATTGGGTCCACGTCCATGCTGATGGGGATGGTACTGGTTGGGTTGGC AATGGTAGTGGTGGAAAGTGCTGTTACATCCATATATATCTGCTATGCAGAAGACCCCTTATTGATTCATAGATGGGACG CTGACTTTTTCAACCAGATTTCTGAGACACTGCATGAACGACTTCAATATAGGAGTGCTCGAGGAAGGGAAGTTTTGACC CACTCGCGGCTCCAAGAAAACGCCTCTATTTGA
Protein sequence (LotjaGi5g1v0341600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMKFSVHILTTYLAVISVLCFWAKQIFWGVAFGIGASLQFLYVISVVDRLPFTMLVLQKAVKMVWSLPEVMRVSYAFMLV VLLWMVLWSFGAAGVVASSMGDGGRWWLLVVFSVSLFWTGAVLCNTVHVIVSGMVFLVLLHGGREAASIPANSLKKSLQS SLTTSFGSICYGSLFTAAIRTLRWEIAVNGKSFNHSARDAWELFQSTGVEALVAYDCSGAVLLMGTIFGGLITGTCSGIW AWVKWSDRVIMIGSTSMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDADFFNQISETLHERLQYRSARGREVLT HSRLQENASI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 186 | 186 | 5.7E-199 | ||
| PANTHER | 1 | 186 | 186 | 5.7E-199 | – | |
| TMHMM | 4 | 23 | 20 | - | – | |
| Phobius | 12 | 34 | 23 | - | – | |
| TMHMM | 28 | 47 | 20 | - | – | |
| Pfam | 31 | 184 | 154 | 1.7E-21 | ||
| Phobius | 35 | 39 | 5 | - | – | |
| Phobius | 40 | 61 | 22 | - | – | |
| Phobius | 62 | 72 | 11 | - | – | |
| Phobius | 73 | 95 | 23 | - | – | |
| TMHMM | 75 | 97 | 23 | - | – | |
| Phobius | 96 | 106 | 11 | - | – | |
| Phobius | 107 | 140 | 34 | - | – | |
| TMHMM | 109 | 131 | 23 | - | – | |
| Phobius | 141 | 160 | 20 | - | – | |
| Phobius | 161 | 179 | 19 | - | – | |
| Phobius | 180 | 219 | 40 | - | – | |
| Pfam | 186 | 286 | 101 | 4.4E-16 | ||
| PANTHER | 186 | 324 | 139 | 5.7E-199 | – | |
| PANTHER | 186 | 324 | 139 | 5.7E-199 | ||
| Phobius | 220 | 242 | 23 | - | – | |
| TMHMM | 220 | 242 | 23 | - | – | |
| Phobius | 243 | 248 | 6 | - | – | |
| TMHMM | 249 | 271 | 23 | - | – | |
| Phobius | 249 | 271 | 23 | - | – | |
| Phobius | 272 | 330 | 59 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0341600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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