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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0341600 |
| Transcript ID | LotjaGi5g1v0341600.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Choline transporter-like protein; TAIR: AT1G25500.3 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487; TrEMBL-Plants: tr|I1LEY5|I1LEY5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0341600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65882961..65885759) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTAATTCTGTTGACTAGTGAGAATTGAGTTCCAAGTTTCTAAATTCTGCTGATTTTGTTGTGGTAGAGTCTAGCGA GAAGTCGGAGAAGTGGCGATGGCAGTGGTAGTGAAGTGGCGGTGGTGGAAGAATCGCGGCCGTGGCATGATGTTTTCTGG TTAGGAATATTTGTAATCCATTTGATTGGGCTGGGGTTCCTTCTAGGGGTTCTTGGCCTTAACAGATTTGAGCAAGAGAA TAGACTTAACATTGATAAGTACACGTCTCGGTTCTCTGAGAATGAGGCTGGGTTGACGGAGACTTACTGGCCGCTCTATG CCGCTGCTGCTGGGGTTGGGACTGTTCTTGGATGGATTTGGTTGTTGTTGTTGGGTTCCCAGGCTACTCAAATGATGAAG TTTTCTGTCCACATCCTCACCACTTATCTTGCTGTCATCAGTGTTCTGTGTTTCTGGGCTAAGCAGATTTTCTGGGGGGT TGCTTTTGGTATTGGAGCTTCTCTGCAGTTCTTGTATGTCATATCCGTCGTAGACAGGTATAGACCTGAAATCGAATTGT CCTTTACATGTTTTATGTTGGATTGAGTTTAAGTTGTTTTTCTATTACTGAGTGATTGCATAAAGCGAGTCATATTGGTG GTAGATAAGGAATAGGATAGGCCTTGAATGTTAGTATAAGTGTAAGAATATTTGGTCGGTTTCACTTTTTTTGCATTCTG TTTTAATGGAGTCTATAAAGGTTCCCTGTGGCTTCTTTTCTTCTCCAGACTTCCATTTACAATGTTAGTTCTGCAAAAAG CTGTGAAGATGGTTTGGAGTCTTCCTGAGGTTATGAGAGTGTCATACGCATTTATGCTTGTTGTGCTTTTATGGATGGTG TTATGGTCATTTGGAGCAGCAGGTGTTGTGGCTTCAAGCATGGGTGATGGCGGACGCTGGTGGCTTCTTGTGGTGAGCTG GCAAGTTTTGCTCTTCATTCTTACTGTACTTGGTTGGACTGGTTATGGAAGCATGTTTCTTAAGCTTCCTCATTCGATTA TGCTGATATTGCAATTCATTCTTGCAGGTTTTCTCTGTAAGCTTATTTTGGACAGGCGCAGTACTCTGTAATACTGTACA TGTTATAGTGTCTGGGATGGTGTTTCTTGTTCTTCTCCATGGCGGTAGAGAGGCAGCATCGATTCCTGCTAACTCCTTAA AGAAATCTTTACAGTCTTCTTTAACAACATCTTTTGGCAGCATTTGCTATGGCTCGTTATTTACTGCTGCTATTAGGACA CTACGGTGGGAGGTAACAGATCATTTGCATTTTGCGACTGATTTGAAGTTCATTTCTTTTATTCATGAAGGCTTTTTCTT CTTTCAGATTCGTGGAATTCGGTCAAAGATTGGCAATAATGAGTGTTTGCTTTGCTTTGTTGATTTCCTTTTCCATCTTG TGGAGACTCTTGTTCGTTTTTTTAACAAGTATGCCTATGTTCAGGTAAACTTCGGCGTCCAAAGTCCATGTTATTAGCCA GTTCTCAATATGATATATATATATATATATATATATATATATATATATATTGCATCTTCTACATGACAATCAAACATGAA ATATGGTTGATTTTCCTATAGTTTAATTTACACTGGATGTGTTGTACTCTTTGGATCACCAGAAAGAGTTCTATGATAAT TTAAATATAGCATCTAGACAACTTTGTTGAAATTTGGTGAATGCATTGGTTCTTGCAAAATTGAGGCATGGTTCTTTGCT CATGTTCTTACAGATTGCTGTTAATGGCAAAAGCTTCAACCATTCCGCTAGAGATGCGTGGGAGTTATTCCAGTCAACTG GAGTTGAAGCTCTTGTGGCCTATGATTGTTCAGGTGCTGTCCTGCTCATGGGCACCATTTTTGGTGGGCTGATAACTGGA ACTTGCTCTGGGATTTGGGCATGGGTTAAATGGAGTGACAGAGTTATTATGATTGGGTCCACGTCCATGCTGATGGGGAT GGTACTGGTAAGTTTATAATCTCCTTGTTGGGGCTTGGACTACAAGCTTTTGGTTGAACTTTTTACAGTAATGATACTCA GATACCCATTTTTCTCTCTCACACACATTTCTTGCTGGGTTTTTGTTGGATGTCTGCGAATTATTTTCCAATTCCTTGTT CTCCAAAATTGATGAGGAACACTGATAGCATGTTTGGACTAACTTCTCTTTCATTAGAATTAATTCTGACACCCAGAAGC TACTTACAAAAGCTTCTCCCAAGAATTAATTTTGGCTTTAGAATCAATTATAGAAAGATTTCCGAGCATACATTGAATTG TTATTATTATAATTACTCCGGTCCTTTGCATTTCTCTATTAATCAAAGACATTGATGTTGGCATGCCATGATAATCATTC CCTGACATATGTTGACTATAAAAAATATTCAAACTGTATTGTTGAATTTTAAGTTTTTTATAGGCACATGGCACAGCTAA ATGATGGCCATTCCTTACATATATCTATTGTTATATCTAAGAATCAGTCAAGCTGTATAATGTAGAACATGTGATTTTTG TGCATGTGACATGAAATACATAATAAAATTTTCAGGTTGGGTTGGCAATGGTAGTGGTGGAAAGTGCTGTTACATCCATA TATATCTGCTATGCAGAAGACCCCTTATTGATTCATAGATGGGACGCTGACTTTTTCAACCAGATTTCTGAGACACTGCA TGAACGACTTCAATATAGGAGTGCTCGAGGAAGGGAAGTTTTGACCCACTCGCGGCTCCAAGAAAACGCCTCTATTTGA
CDS sequence (LotjaGi5g1v0341600.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAAGTTTTCTGTCCACATCCTCACCACTTATCTTGCTGTCATCAGTGTTCTGTGTTTCTGGGCTAAGCAGATTTT CTGGGGGGTTGCTTTTGGTATTGGAGCTTCTCTGCAGTTCTTGTATGTCATATCCGTCGTAGACAGACTTCCATTTACAA TGTTAGTTCTGCAAAAAGCTGTGAAGATGGTTTGGAGTCTTCCTGAGGTTATGAGAGTGTCATACGCATTTATGCTTGTT GTGCTTTTATGGATGGTGTTATGGTCATTTGGAGCAGCAGGTGTTGTGGCTTCAAGCATGGGTGATGGCGGACGCTGGTG GCTTCTTGTGGTTTTCTCTGTAAGCTTATTTTGGACAGGCGCAGTACTCTGTAATACTGTACATGTTATAGTGTCTGGGA TGGTGTTTCTTGTTCTTCTCCATGGCGGTAGAGAGGCAGCATCGATTCCTGCTAACTCCTTAAAGAAATCTTTACAGTCT TCTTTAACAACATCTTTTGGCAGCATTTGCTATGGCTCGTTATTTACTGCTGCTATTAGGACACTACGGTGGGAGATTCG TGGAATTCGGTCAAAGATTGGCAATAATGAGTGTTTGCTTTGCTTTGTTGATTTCCTTTTCCATCTTGTGGAGACTCTTG TTCGTTTTTTTAACAAGTATGCCTATGTTCAGATTGCTGTTAATGGCAAAAGCTTCAACCATTCCGCTAGAGATGCGTGG GAGTTATTCCAGTCAACTGGAGTTGAAGCTCTTGTGGCCTATGATTGTTCAGGTGCTGTCCTGCTCATGGGCACCATTTT TGGTGGGCTGATAACTGGAACTTGCTCTGGGATTTGGGCATGGGTTAAATGGAGTGACAGAGTTATTATGATTGGGTCCA CGTCCATGCTGATGGGGATGGTACTGGTTGGGTTGGCAATGGTAGTGGTGGAAAGTGCTGTTACATCCATATATATCTGC TATGCAGAAGACCCCTTATTGATTCATAGATGGGACGCTGACTTTTTCAACCAGATTTCTGAGACACTGCATGAACGACT TCAATATAGGAGTGCTCGAGGAAGGGAAGTTTTGACCCACTCGCGGCTCCAAGAAAACGCCTCTATTTGA
Protein sequence (LotjaGi5g1v0341600.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMKFSVHILTTYLAVISVLCFWAKQIFWGVAFGIGASLQFLYVISVVDRLPFTMLVLQKAVKMVWSLPEVMRVSYAFMLV VLLWMVLWSFGAAGVVASSMGDGGRWWLLVVFSVSLFWTGAVLCNTVHVIVSGMVFLVLLHGGREAASIPANSLKKSLQS SLTTSFGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCFVDFLFHLVETLVRFFNKYAYVQIAVNGKSFNHSARDAW ELFQSTGVEALVAYDCSGAVLLMGTIFGGLITGTCSGIWAWVKWSDRVIMIGSTSMLMGMVLVGLAMVVVESAVTSIYIC YAEDPLLIHRWDADFFNQISETLHERLQYRSARGREVLTHSRLQENASI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 363 | 363 | 1.2E-236 | ||
| PANTHER | 1 | 363 | 363 | 1.2E-236 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 4 | 23 | 20 | - | – | |
| Phobius | 6 | 23 | 18 | - | – | |
| Phobius | 24 | 29 | 6 | - | – | |
| TMHMM | 28 | 47 | 20 | - | – | |
| Phobius | 30 | 47 | 18 | - | – | |
| Pfam | 31 | 325 | 295 | 5.6E-54 | ||
| Phobius | 48 | 72 | 25 | - | – | |
| Phobius | 73 | 95 | 23 | - | – | |
| TMHMM | 75 | 97 | 23 | - | – | |
| Phobius | 96 | 106 | 11 | - | – | |
| Phobius | 107 | 140 | 34 | - | – | |
| TMHMM | 109 | 131 | 23 | - | – | |
| Phobius | 141 | 159 | 19 | - | – | |
| Phobius | 160 | 182 | 23 | - | – | |
| TMHMM | 162 | 184 | 23 | - | – | |
| Phobius | 183 | 258 | 76 | - | – | |
| Phobius | 259 | 282 | 24 | - | – | |
| TMHMM | 260 | 282 | 23 | - | – | |
| Phobius | 283 | 287 | 5 | - | – | |
| TMHMM | 288 | 310 | 23 | - | – | |
| Phobius | 288 | 310 | 23 | - | – | |
| Phobius | 311 | 369 | 59 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0341600.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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