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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0342400 |
Transcript ID | LotjaGi5g1v0342400.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Serine/threonine protein phosphatase 2A regulatory subunit B; TAIR: AT3G09880.1 Protein phosphatase 2A regulatory B subunit family protein; Swiss-Prot: sp|O04376|2A5B_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform; TrEMBL-Plants: tr|A0A072VQI0|A0A072VQI0_MEDTR Protein phosphatase 2A regulatory B subunit family protein; Found in the gene: LotjaGi5g1v0342400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65949259..65952841) extracted from Lotus japonicus Gifu genome v1.2.
CGAGAGCTAGATTTGCCACCCCAACCATTAGATTTCACACCCCTAATTTTCGGATTTTCAAGTTCCGAATTATTTCGGAA TCTTAGATTCCGAAATTAATTCGTGATTTTTAGTTCAAAATACATCTAACACCACACTTTTGAGTAAAAAACCACACTTT TGAGTAAAAAAGTGCTTCGGAAACCTTATTTCCGAAATATTTCGGAAACTGAGTTTCCGTAAGTGGGGTGACATTTCTAA TGGTTGGGGTGCCAAATCTAATGATCGATTTTCTCGTGTCCCAAACAAACAGCTACACATCCAAATTCCCCTTTACAATT CTCCAGTGAAGAACGCCTTGGATGTGACTCATTCTCCATTTCATCCTTCAAAATGCTTCCACGATTCAATCAATTTCTAT TTTTCAATTTTGGATTTAATCCCAGAAATCAAACAAAATTGTAGTTTTTTTATTATTTGTAAATTTGTTGAAAATGTTCC ACAAGATCATAAAGCGCGCGCACAAGAAATCATGGAAATCACCATTCCCTGAAATCCCCACCAACGGCCACCAATTCTAC GAAGTCGTTGTCAAGCACGCTTCACGCGCCTCCGCCACCGGCAACACCGAGCCGGAAAACCATCCTCCGCCGCCGCAGGC GGCCTCCGAGCCTCCATCCATCATCGAACCTCTCCCGCCGCTGCGAGAAACCCCCGCCACCCAACGCCCCGCCCTCCTCC TCCGCAAAATCCAGCTCTGCCGCTCCATCTGCGACTTCTCACACGCCCTCAAATCCCTCGCCGAGAAGGAAATCAAACGC CAAACACTCAACGAGCTCATCGACACGCTCCAATCTGACTCCGCCGCCGCATCGTTCGCCGAATCGCAAGAAGATCTTAT CTCCATGGTCTCCGTCAACATCTTCCGCTGCCTTCCTCCGTCGGCGCGCGGCAGCTCCGACACCGCAGATCCCGAAGACG AAGGCGATACCTATCTAGATCCATCATGGCCACACCTGCAGCTTGTCTACGAGATCCTCTACCGCTACGTTGTTTCACCG GAATTCGATATCAGAACCGCGAAACGCTACGTCGATCATGTGTTTGTTCTGAAACTGCTTGATCTGTTCGATTCGGAGGA TCAGCGTGAGCGTGAGTATTTGAAGAGCATTCTCCATCGTATCTATGGAAAATTCATGGTGCATAGGCCATTCATAAGGA AAGCCATCAATGACATATTCTACAGGTTCATATTTGAGACGCAGAGGCATAATGGGATCAGCGAGTTGCTGGAGATTCTG GCGAGTATCATCAATGGTTTTGCTCTGCCTATGAAGGAGGAGCACAAGTTGTTCTTGATTAGGACCCTTGTGCCGCTGCA TAAGCCGAAGTGCATTTCGTCTTACCATCAGAATTTGTCTTATTGCATTGTGCAGTTTGTTGAGAAGGATGGGAGGTTGG CTGATCCTGTGATCAAGGGGCTGTTGAAGTATTGGCCCGTCACGAATTGCCAGAAGGAGGTGCTTTTTCTTGGGGAGTTG GAAGAGGTTCTGGAGGCAACTCAGCCTCCTGAGTTTGTGAAGTGCATGGTCTCTCTTTTCCGGCAGATTGGTCGGTGCCT TAATAGCCCTCACTTTCAGGTATCTTCTGTTCTGTTGTCACTGCATTCAACATGTTTTATATATTTACTATGCATGTGCA GGCTGAATTAAAGTATGATACTACCTCCTTATTTAATGTGGGCTATAGTTAAGGGAAGTTGGGGAAGAACACATGAAATT GATGAGTATAAATGATGGTATTTTAGTCAAAGATATAATAATATTCTATAGTACCATTTGAGGACTTCTTAAATTGGGTG TGTAATACAAAATTTATAGAATGTAGTATATACAATTACAATACAATGGTGGTTTTTGTACATATTGCATTTTCAGATAG GATATTCTTAGCCTTTAGGGGGGTGTTTGCTTTTGCTGAGGTTGCTTGTATTGTAAACTATCATGTATGGTATCTTCCAT CTTTTATTGATTATTTGGACAATACTCTTGAGTGGGTTTTGTATGGTTGCTTGCATGTTGGAATGGTTATCATTAAGTTA AGGTTATTTGGTTGGGAAACTTAGCATTCATTTTGTCTACTTACCTTAACAATGCTAGCAAAGGAAAAGTAAAAATGTAA TTGATAGTGATGTATTGAAATTTGGTGGTGTTCTTTTTGCTTTTTAATGTCGGGGGTACTGATCCTTTTGCTCAGGAAAG AGGAGCATCATTTAAGACTAGCAATTTAATTTTAGCGGAATATTGCCGAAAACGAGCTTTTATGCATTGAAGAGTGGTCG ATGGTATCTACTATGACTAGAGGAAGGTAGAGAGAGCACTCTTAACAAAAACCGGCGCGTATTTATTTAAGTTCCAATGC TATTAGGGACTCTAACACATAGAAGCTTATGGTACCCTGTTACATTTTAAAGTTCCTTGTTGTGAAAAATCATAAATGAA CTGGCACACAAGAACAGTAGCATATTATTATCAATTCATAAGGGGGTATGGGCTGAACATTTTTTATCAAATGTGTGAAT TTGGCTTCAATATTGATGATCTTGCTTTTCTTTGTCTTTGGGGAAATACTAAGCTAGCAAGTGTCATAGTCTGGTTTTGT TTGGCTGATATTAGTAGTATCAATGTTTATTGTTGGTTGCCTGGTTATGATTAGCCCCACCTGGGGAAAATTTTGTGGAC TTTTGCCTTTTGAATTTGGACCTAAATTTAATTGGTTAGATATCATGGTGTTCAGAGTTTATTATACATAATATCAATAA ATGATACACCTATCATTTGACAGTAGCAACAGAAAAATTGTCCTTATTCTCTTTTGATTGCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTGAATAAAACCTTTGTTGTATCCATGGCAGGTTGCTGAACGAGCACTTTACTTGTGGAACAATGAACACAT TATAAGTTTAGTAGCTCAAAATCGAAATATTATATTGCCAATAATATTTGAAGCTTTGGAGAAGAACTTGAAAAGTCATT GGAACCGAGCAGTGTATGGTCTAACAAACAATGTGAGGAAGATGTTTCAGGAGATGGATCCTGAACTATTTGAAGAGTGT GAAAGTAAGTACTTGGAGAAGGAATCCAGTGCTAGAGAACTGGAAGAGAAGAGGGAGTTAACATGGAAGAAATTGGAAGA GGTGGCTGCACAAGCCATGAGGGATGGTGTAGTTTTGGTTAACTAATGAATTAGGATTCTAACTCTTCTTTTCAGTTTGG CTGTTGTGCAGAAATTTCTTCCTATATTGGCGTTACAATACATCACTGCTGCATTACTGTTAGTGTAATTTGGAAAGGGA GATATTATAATTTTATTTCACATACGAGGCGTGATTAACAAGATGTACAAATTAACAGGCTACTGGAAAAGGGATGCAAA AAAATGTATCTATATCCCTCGTTTTTTGGTTCATTCTTTTTATCCTGTATTTTTTGTTAATTGTAAATACAACCTTCTAT TTTCCTTCAATTAAGTTGTCATTTAATTTTAGGCATTTGTTTGATGAATTGATAAAGGTGCTC
CDS sequence (LotjaGi5g1v0342400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCACAAGATCATAAAGCGCGCGCACAAGAAATCATGGAAATCACCATTCCCTGAAATCCCCACCAACGGCCACCA ATTCTACGAAGTCGTTGTCAAGCACGCTTCACGCGCCTCCGCCACCGGCAACACCGAGCCGGAAAACCATCCTCCGCCGC CGCAGGCGGCCTCCGAGCCTCCATCCATCATCGAACCTCTCCCGCCGCTGCGAGAAACCCCCGCCACCCAACGCCCCGCC CTCCTCCTCCGCAAAATCCAGCTCTGCCGCTCCATCTGCGACTTCTCACACGCCCTCAAATCCCTCGCCGAGAAGGAAAT CAAACGCCAAACACTCAACGAGCTCATCGACACGCTCCAATCTGACTCCGCCGCCGCATCGTTCGCCGAATCGCAAGAAG ATCTTATCTCCATGGTCTCCGTCAACATCTTCCGCTGCCTTCCTCCGTCGGCGCGCGGCAGCTCCGACACCGCAGATCCC GAAGACGAAGGCGATACCTATCTAGATCCATCATGGCCACACCTGCAGCTTGTCTACGAGATCCTCTACCGCTACGTTGT TTCACCGGAATTCGATATCAGAACCGCGAAACGCTACGTCGATCATGTGTTTGTTCTGAAACTGCTTGATCTGTTCGATT CGGAGGATCAGCGTGAGCGTGAGTATTTGAAGAGCATTCTCCATCGTATCTATGGAAAATTCATGGTGCATAGGCCATTC ATAAGGAAAGCCATCAATGACATATTCTACAGGTTCATATTTGAGACGCAGAGGCATAATGGGATCAGCGAGTTGCTGGA GATTCTGGCGAGTATCATCAATGGTTTTGCTCTGCCTATGAAGGAGGAGCACAAGTTGTTCTTGATTAGGACCCTTGTGC CGCTGCATAAGCCGAAGTGCATTTCGTCTTACCATCAGAATTTGTCTTATTGCATTGTGCAGTTTGTTGAGAAGGATGGG AGGTTGGCTGATCCTGTGATCAAGGGGCTGTTGAAGTATTGGCCCGTCACGAATTGCCAGAAGGAGGTGCTTTTTCTTGG GGAGTTGGAAGAGGTTCTGGAGGCAACTCAGCCTCCTGAGTTTGTGAAGTGCATGGTCTCTCTTTTCCGGCAGATTGGTC GGTGCCTTAATAGCCCTCACTTTCAGGTTGCTGAACGAGCACTTTACTTGTGGAACAATGAACACATTATAAGTTTAGTA GCTCAAAATCGAAATATTATATTGCCAATAATATTTGAAGCTTTGGAGAAGAACTTGAAAAGTCATTGGAACCGAGCAGT GTATGGTCTAACAAACAATGTGAGGAAGATGTTTCAGGAGATGGATCCTGAACTATTTGAAGAGTGTGAAAGTAAGTACT TGGAGAAGGAATCCAGTGCTAGAGAACTGGAAGAGAAGAGGGAGTTAACATGGAAGAAATTGGAAGAGGTGGCTGCACAA GCCATGAGGGATGGTGTAGTTTTGGTTAACTAA
Protein sequence (LotjaGi5g1v0342400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFHKIIKRAHKKSWKSPFPEIPTNGHQFYEVVVKHASRASATGNTEPENHPPPPQAASEPPSIIEPLPPLRETPATQRPA LLLRKIQLCRSICDFSHALKSLAEKEIKRQTLNELIDTLQSDSAAASFAESQEDLISMVSVNIFRCLPPSARGSSDTADP EDEGDTYLDPSWPHLQLVYEILYRYVVSPEFDIRTAKRYVDHVFVLKLLDLFDSEDQREREYLKSILHRIYGKFMVHRPF IRKAINDIFYRFIFETQRHNGISELLEILASIINGFALPMKEEHKLFLIRTLVPLHKPKCISSYHQNLSYCIVQFVEKDG RLADPVIKGLLKYWPVTNCQKEVLFLGELEEVLEATQPPEFVKCMVSLFRQIGRCLNSPHFQVAERALYLWNNEHIISLV AQNRNIILPIIFEALEKNLKSHWNRAVYGLTNNVRKMFQEMDPELFEECESKYLEKESSARELEEKRELTWKKLEEVAAQ AMRDGVVLVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 489 | 489 | 2.4E-270 | – | |
PANTHER | 1 | 489 | 489 | 2.4E-270 | ||
PIRSF | 7 | 486 | 480 | 1.6E-218 | ||
MobiDBLite | 37 | 71 | 35 | - | – | |
MobiDBLite | 47 | 68 | 22 | - | – | |
Pfam | 67 | 478 | 412 | 2.2E-179 | ||
Gene3D | 74 | 477 | 404 | 2.3E-178 | ||
SUPERFAMILY | 79 | 458 | 380 | 2.11E-148 | ||
Coils | 102 | 122 | 21 | - | – | |
Coils | 446 | 466 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Protein phosphatase type 2A complex | A protein complex that has protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic, scaffolding, and regulatory subunits. The catalytic and scaffolding subunits form the core enzyme, and the holoenzyme also includes the regulatory subunit. | ||
Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
Molecular function | Protein phosphatase regulator activity | Modulates the activity of a protein phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a protein substrate molecule. |
Expression pattern of LotjaGi5g1v0342400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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