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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0343100 |
| Transcript ID | LotjaGi5g1v0343100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G04780.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780; TrEMBL-Plants: tr|I1NFE9|I1NFE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0343100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66037854..66039751) extracted from Lotus japonicus Gifu genome v1.2.
ATATTGTTTTCCTTTTCCTTCTCTACAATGACATGAAACCCTTGAGAAGGTGTGGGAGGTTTTGTGCTTGTTCTGGCATT CGCTTTAGGAATCTGTCAGTTATTTCTGAGGCCAAACCAGAGCTGTTAGAGGTGGAAAAAGATGTCCATGTGGATCCTGA TTTTACTCGTGTCTCAAATTTGCAGTATCTTTTGCAGTTATGTGCTAAAACAAGATCCTCTGTGGGGGGAAGGGCATGCC ATGCTCAGATGATTCGTGTCGGCTTTGAAATGGACATATTGACATCAAATATGCTGATTAACATGTACTCTAAATGTTCG TTAGTTGATGATGCTCGCAAAAAATTCAATGAAATGCCAGTTAAAAGCTTAGTTTCATGGAATACCATGATTGGAGCGCT TACCCAGAATGTTGTGGAGCAGGAAGCTCTCATACTCTTCATTCAAATGCAAAGAGAGGGGACCCCTTTCAATGAGTTTA CCATTTCCAGTGTTCTGTGTGAGTGTGCCTTCAGATGTGCTATACTTGAATGCATGCAGTTGCATGCTTTTTCAATTAAG GCTTCCGTAGATTCAAATTGTTTTGTTGGAACTTCTTTACTCCATGTCTATGCTAAGTGCTCTTCAATGAAAGATGCGGG TAGGATATTTCAGAGCATGCCTGAGACAAATGCTGTTACATGGAGTTCAATGATGGCAGGGTATGTGCAGAATGGGTTTC ATGAGGAGGCCTTGCTGCTTTTTCAGAATGCTCAGTTGATGGGTTTCGAGCAGGACGCGTTTATGATATCATCTGTTGTT AGTGCTTGTGCAAGCTTGGCAACTTTGATTGAAGGGAAGCAAGTGCATGCAATGTCATGTAAGTCTGGATTTGATTCAAA TACATATGTTACATCCTCCATTATAGACATGTATGCCAAATGTGGCTGCATAAAAGAATCTTACCTTATATTTCAAGGTG TGGAGGTGAAAAGCATTGTTTTATGGAATGCAATGATTTCTGGGTTTGCTAGACATGCTTGTGCGCTGGAGGCTATGATA TTATTTGAAAAAATGCAGCAGAGAGGCTTCTTTCCTGATGAAGTGACATATGTATCGGTACTAAATGCATGTAGTCATAT GGGTTTGCATGAAGAAGGACAGAAGTATTTTGATCTCATGGTCAAACAGCATAATCTTTCACCCAGTGTCCGTCACTACT CATGTATGGTTGATATTCTTGGTCGAGCAGGACGGATTCAACAGGCTTATGACTTGATAGAGAGAATGTCATTTGATGCA ACTAATTCTATGTGGGGTTCGCTTTTAGCTTCTTGTAGAATTTATGGCAATATTGAGTTTGCTGAGATTGCAGCCAAGCA TCTGTTTGAAATGGAACCTAACAATGCTGGAAACCACATCTTGCTTGCCAACATATATGCAGCAAATAAAAAGTGGGAGG AAGTTGCAAGAACAAGGAAGGCCCTCAGAGAAGGTGACATAAGGAAGGAGAGGGGTACGAGTTGGATTGAAATTAAGAAT AAGATTCACTCATTTACTGTGGGTGAGAGAAATCATCCACAAATCGAGGAGATTTATGCTAAGTTGGATAGTTTGATTGA GGAGTTGAAGAAGCTGAATTACAAGGTTGATACCAATAATGACCTGCACGATGTGGAAGAAAGCAGCAAACAAATGCTTT TGAGGCACCACAGTGAGAAGCTTGCTATAACCTTTGGATTGATGTGTTTGCCTAGTAACATACCAATAAGGATTATGAAA AACCTCAGAATCTGTGGTGATTGCCATGAATTTATGAAGCTCGTGTCTAAGTTTACAAGCCGGGAGATCATTGTTCGAGA TACAAACCGTTTTCACCACTTTAAGGATGGTCTTTGTTCTTGTGGAGGCTTTTGGTGA
CDS sequence (LotjaGi5g1v0343100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACCCTTGAGAAGGTGTGGGAGGTTTTGTGCTTGTTCTGGCATTCGCTTTAGGAATCTGTCAGTTATTTCTGAGGC CAAACCAGAGCTGTTAGAGGTGGAAAAAGATGTCCATGTGGATCCTGATTTTACTCGTGTCTCAAATTTGCAGTATCTTT TGCAGTTATGTGCTAAAACAAGATCCTCTGTGGGGGGAAGGGCATGCCATGCTCAGATGATTCGTGTCGGCTTTGAAATG GACATATTGACATCAAATATGCTGATTAACATGTACTCTAAATGTTCGTTAGTTGATGATGCTCGCAAAAAATTCAATGA AATGCCAGTTAAAAGCTTAGTTTCATGGAATACCATGATTGGAGCGCTTACCCAGAATGTTGTGGAGCAGGAAGCTCTCA TACTCTTCATTCAAATGCAAAGAGAGGGGACCCCTTTCAATGAGTTTACCATTTCCAGTGTTCTGTGTGAGTGTGCCTTC AGATGTGCTATACTTGAATGCATGCAGTTGCATGCTTTTTCAATTAAGGCTTCCGTAGATTCAAATTGTTTTGTTGGAAC TTCTTTACTCCATGTCTATGCTAAGTGCTCTTCAATGAAAGATGCGGGTAGGATATTTCAGAGCATGCCTGAGACAAATG CTGTTACATGGAGTTCAATGATGGCAGGGTATGTGCAGAATGGGTTTCATGAGGAGGCCTTGCTGCTTTTTCAGAATGCT CAGTTGATGGGTTTCGAGCAGGACGCGTTTATGATATCATCTGTTGTTAGTGCTTGTGCAAGCTTGGCAACTTTGATTGA AGGGAAGCAAGTGCATGCAATGTCATGTAAGTCTGGATTTGATTCAAATACATATGTTACATCCTCCATTATAGACATGT ATGCCAAATGTGGCTGCATAAAAGAATCTTACCTTATATTTCAAGGTGTGGAGGTGAAAAGCATTGTTTTATGGAATGCA ATGATTTCTGGGTTTGCTAGACATGCTTGTGCGCTGGAGGCTATGATATTATTTGAAAAAATGCAGCAGAGAGGCTTCTT TCCTGATGAAGTGACATATGTATCGGTACTAAATGCATGTAGTCATATGGGTTTGCATGAAGAAGGACAGAAGTATTTTG ATCTCATGGTCAAACAGCATAATCTTTCACCCAGTGTCCGTCACTACTCATGTATGGTTGATATTCTTGGTCGAGCAGGA CGGATTCAACAGGCTTATGACTTGATAGAGAGAATGTCATTTGATGCAACTAATTCTATGTGGGGTTCGCTTTTAGCTTC TTGTAGAATTTATGGCAATATTGAGTTTGCTGAGATTGCAGCCAAGCATCTGTTTGAAATGGAACCTAACAATGCTGGAA ACCACATCTTGCTTGCCAACATATATGCAGCAAATAAAAAGTGGGAGGAAGTTGCAAGAACAAGGAAGGCCCTCAGAGAA GGTGACATAAGGAAGGAGAGGGGTACGAGTTGGATTGAAATTAAGAATAAGATTCACTCATTTACTGTGGGTGAGAGAAA TCATCCACAAATCGAGGAGATTTATGCTAAGTTGGATAGTTTGATTGAGGAGTTGAAGAAGCTGAATTACAAGGTTGATA CCAATAATGACCTGCACGATGTGGAAGAAAGCAGCAAACAAATGCTTTTGAGGCACCACAGTGAGAAGCTTGCTATAACC TTTGGATTGATGTGTTTGCCTAGTAACATACCAATAAGGATTATGAAAAACCTCAGAATCTGTGGTGATTGCCATGAATT TATGAAGCTCGTGTCTAAGTTTACAAGCCGGGAGATCATTGTTCGAGATACAAACCGTTTTCACCACTTTAAGGATGGTC TTTGTTCTTGTGGAGGCTTTTGGTGA
Protein sequence (LotjaGi5g1v0343100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKPLRRCGRFCACSGIRFRNLSVISEAKPELLEVEKDVHVDPDFTRVSNLQYLLQLCAKTRSSVGGRACHAQMIRVGFEM DILTSNMLINMYSKCSLVDDARKKFNEMPVKSLVSWNTMIGALTQNVVEQEALILFIQMQREGTPFNEFTISSVLCECAF RCAILECMQLHAFSIKASVDSNCFVGTSLLHVYAKCSSMKDAGRIFQSMPETNAVTWSSMMAGYVQNGFHEEALLLFQNA QLMGFEQDAFMISSVVSACASLATLIEGKQVHAMSCKSGFDSNTYVTSSIIDMYAKCGCIKESYLIFQGVEVKSIVLWNA MISGFARHACALEAMILFEKMQQRGFFPDEVTYVSVLNACSHMGLHEEGQKYFDLMVKQHNLSPSVRHYSCMVDILGRAG RIQQAYDLIERMSFDATNSMWGSLLASCRIYGNIEFAEIAAKHLFEMEPNNAGNHILLANIYAANKKWEEVARTRKALRE GDIRKERGTSWIEIKNKIHSFTVGERNHPQIEEIYAKLDSLIEELKKLNYKVDTNNDLHDVEESSKQMLLRHHSEKLAIT FGLMCLPSNIPIRIMKNLRICGDCHEFMKLVSKFTSREIIVRDTNRFHHFKDGLCSCGGFW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 39 | 127 | 89 | 1.3E-11 | ||
| PANTHER | 50 | 159 | 110 | 2.1E-91 | – | |
| ProSiteProfiles | 81 | 115 | 35 | 8.835 | ||
| Pfam | 84 | 110 | 27 | 0.007 | ||
| Pfam | 114 | 143 | 30 | 0.0026 | ||
| ProSiteProfiles | 116 | 146 | 31 | 5.272 | ||
| Gene3D | 128 | 267 | 140 | 4.8E-23 | ||
| PANTHER | 166 | 274 | 109 | 2.1E-91 | – | |
| ProSiteProfiles | 182 | 212 | 31 | 6.599 | ||
| Pfam | 187 | 211 | 25 | 1.1 | ||
| ProSiteProfiles | 213 | 247 | 35 | 10.117 | ||
| TIGRFAM | 215 | 248 | 34 | 5.2E-5 | ||
| Pfam | 215 | 239 | 25 | 9.2E-6 | ||
| ProSiteProfiles | 248 | 282 | 35 | 5.7 | ||
| PANTHER | 251 | 475 | 225 | 2.1E-91 | – | |
| ProSiteProfiles | 283 | 313 | 31 | 6.062 | ||
| Gene3D | 291 | 510 | 220 | 1.2E-35 | ||
| Pfam | 313 | 361 | 49 | 4.9E-12 | ||
| ProSiteProfiles | 314 | 348 | 35 | 11.213 | ||
| TIGRFAM | 316 | 350 | 35 | 2.8E-5 | ||
| ProSiteProfiles | 349 | 384 | 36 | 8.966 | ||
| TIGRFAM | 351 | 385 | 35 | 0.0028 | ||
| ProSiteProfiles | 385 | 419 | 35 | 7.947 | ||
| Pfam | 388 | 412 | 25 | 0.026 | ||
| ProSiteProfiles | 451 | 485 | 35 | 5.163 | ||
| Pfam | 488 | 611 | 124 | 1.7E-40 | ||
| Coils | 511 | 531 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0343100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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