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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0343700 |
| Transcript ID | LotjaGi5g1v0343700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fatty acid desaturase; TAIR: AT3G12120.1 fatty acid desaturase 2; Swiss-Prot: sp|P48630|FD6E1_SOYBN Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1; TrEMBL-Plants: tr|B1A9T6|B1A9T6_9FABA Oleate desaturase; Found in the gene: LotjaGi5g1v0343700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66085281..66087392) extracted from Lotus japonicus Gifu genome v1.2.
CTCACAGGCACCACATTTTTCTCTATCTCCCTTTTCTTATCACATGTATCATATCAGTAATGATACTTGAACATACAAAT GGTGCACCCAATTTTGCTCTCTATCTCTCTCTTCTTACATATATCACATCAATTACTTCTCTCTTCTCTTACTTTTCTCA CTCAGGGTGCTTATTGGATATCTGCACTATGCGGATATCTACAAATCATTTTCCTTCATTTGTTACTTCTCTCTTAACTT CCTTTCTCACTCTGGATATTTGTTGAGTGTCTGCACTATGCGAATTTCCATGAATCATTCTCCATTGTCTCTAGATTTTT CACTTTCTGGTTTAAAATCAAGGAATTGTAGAACTGAACCAAACTTCTCTGTACTTTCATACAGGTCTGGCTAAAGAAAC TAACAATGGGAGCTGGAGGCCATGCCACTTCCCTTGAACCAAAGAATCCTCTCTCAAGGGTTCCACACACAAAGCCCCCA TTCACTGTTGGCCAACTCAAGAAAGCAATCCCACCCCATTGCTTTGAAAGATCCCTCCTCTCATCATTCTCCTATGTTCT TCATGACCTCTCACTAGCTTTCATTTTCTTCTACATTGCTACTACCTACTTCCACCTCCTTCCACACCCTCTTTCCTTCA TTGCTTGGCCAATCTATTGGATTCTCCAAGGATGCATCCTCACTGGGGTGTGGGTGATTGCTCATGAGTGTGGTCACCAT GCATTTAGCAAGTACCAATGGGTTGATGATTTAGTTGGTTTGGTCCTTCACTCTGCACTTCTAGTCCCATATTTCTCATG GAAAATCAGCCACCGCCGCCACCACTCCAACACCGGATCGCTTGAGCGTGATGAAGTGTTTGTTCCAAAACCAAAATTCA ATGTACCATGGTACAACAAATACTTGAACAGTCCACCAGGTAGTTAAGATAGAATATATCTTGTTATTATTCTGTTTTGG GTTAGGATTGAATTATTTATCTTAAATTCAAATCTCAAATTGCACAAAGTTATTCTAGCTTAAGCAAATGTATCGGTTTG AGTCATTGTGAATGCAACTACGTTAAATACTTTCTAGGAAGAGTTTTGCCGCACATAGCGGTCCTATTTTACTTTAACAT TATTGCCTATACTTGTGGTTAAAAAAATGCTCAAATAGTTTTTGTAACTCTTGATATGTTTCTGTTTCATCTCCTCTGTA TATAAGCAGAGTATGTAACACTTTGCAGTAAATCAATTCCATTCCTTTACCTGCAGGAAGAGCGGCTACACTTTTCATCA CACTCACCATAGGATGGCCTTTGTACTTGGCCTTCAATGTTTCTGGAAGACCCTATGAACGCTTTGCAAGCCACTTCCAT CCTTATGCTCCCATATACTCTCAAAGAGAAAGGCTTCTAATTTTTGTTTCTGATGCTGCTGTTTTTGCTGCAACTTATTT CCTGTACCACGTAGCAACCATCAAAGGGTTTGTTTGGCTTGTTTGTGTTTATGGGGTGCCATTGCTCATTGTGAATGGAT TTCTTGTGACAATCACTTATTTGCAGCACACACACAGTGCTTTACCTCACTATGATTCATCTGAATGGGACTGGTTAAGG GGTGCTCTGGCAACTGTGGACAGAGATTATGGGATTCTCAACAAGGTCTTTCATCATATAACTGATACGCATGTTGCACA CCATCTGTTTTCAACAATGCCACATTACCATGCAATGGAAGCAACCAATGCAATGAAGCATGTGTTGGGTGAGTACTATA GATTTGATGACACCCCATTTTACAAGGCACTGTGGAGAGAAGCAAGAGAGTGTCTCTATGTGGATCCGGATGAAGGGGAA GCTAAGAAGGGTGTTTATTGGTACAGGAACAAGTTTTGATGAAGAAAGCAGCAAGAACATGAAGAATAGTGAGTTGAAAA TGTAGTATTGTTGTGTAACTTAATAAGCAAGTTGAATAATAAGTGGGTTTCCTGTGTAATGTGCTACTGTGTTGTGAAAG CTTGAAACTTGAAAGAGCTTGTTGTGATCATGGTTATTGTAATGTAAGGTATCATGGATATTCTTCTTGAGAAGTAACTG AAATATATTCTAGGACTCTAGTGATAACTGAT
CDS sequence (LotjaGi5g1v0343700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGCTGGAGGCCATGCCACTTCCCTTGAACCAAAGAATCCTCTCTCAAGGGTTCCACACACAAAGCCCCCATTCAC TGTTGGCCAACTCAAGAAAGCAATCCCACCCCATTGCTTTGAAAGATCCCTCCTCTCATCATTCTCCTATGTTCTTCATG ACCTCTCACTAGCTTTCATTTTCTTCTACATTGCTACTACCTACTTCCACCTCCTTCCACACCCTCTTTCCTTCATTGCT TGGCCAATCTATTGGATTCTCCAAGGATGCATCCTCACTGGGGTGTGGGTGATTGCTCATGAGTGTGGTCACCATGCATT TAGCAAGTACCAATGGGTTGATGATTTAGTTGGTTTGGTCCTTCACTCTGCACTTCTAGTCCCATATTTCTCATGGAAAA TCAGCCACCGCCGCCACCACTCCAACACCGGATCGCTTGAGCGTGATGAAGTGTTTGTTCCAAAACCAAAATTCAATGTA CCATGGTACAACAAATACTTGAACAGTCCACCAGGAAGAGCGGCTACACTTTTCATCACACTCACCATAGGATGGCCTTT GTACTTGGCCTTCAATGTTTCTGGAAGACCCTATGAACGCTTTGCAAGCCACTTCCATCCTTATGCTCCCATATACTCTC AAAGAGAAAGGCTTCTAATTTTTGTTTCTGATGCTGCTGTTTTTGCTGCAACTTATTTCCTGTACCACGTAGCAACCATC AAAGGGTTTGTTTGGCTTGTTTGTGTTTATGGGGTGCCATTGCTCATTGTGAATGGATTTCTTGTGACAATCACTTATTT GCAGCACACACACAGTGCTTTACCTCACTATGATTCATCTGAATGGGACTGGTTAAGGGGTGCTCTGGCAACTGTGGACA GAGATTATGGGATTCTCAACAAGGTCTTTCATCATATAACTGATACGCATGTTGCACACCATCTGTTTTCAACAATGCCA CATTACCATGCAATGGAAGCAACCAATGCAATGAAGCATGTGTTGGGTGAGTACTATAGATTTGATGACACCCCATTTTA CAAGGCACTGTGGAGAGAAGCAAGAGAGTGTCTCTATGTGGATCCGGATGAAGGGGAAGCTAAGAAGGGTGTTTATTGGT ACAGGAACAAGTTTTGA
Protein sequence (LotjaGi5g1v0343700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAGGHATSLEPKNPLSRVPHTKPPFTVGQLKKAIPPHCFERSLLSSFSYVLHDLSLAFIFFYIATTYFHLLPHPLSFIA WPIYWILQGCILTGVWVIAHECGHHAFSKYQWVDDLVGLVLHSALLVPYFSWKISHRRHHSNTGSLERDEVFVPKPKFNV PWYNKYLNSPPGRAATLFITLTIGWPLYLAFNVSGRPYERFASHFHPYAPIYSQRERLLIFVSDAAVFAATYFLYHVATI KGFVWLVCVYGVPLLIVNGFLVTITYLQHTHSALPHYDSSEWDWLRGALATVDRDYGILNKVFHHITDTHVAHHLFSTMP HYHAMEATNAMKHVLGEYYRFDDTPFYKALWREARECLYVDPDEGEAKKGVYWYRNKF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 378 | 378 | 1.7E-216 | – | |
| PANTHER | 1 | 378 | 378 | 1.7E-216 | – | |
| MobiDBLite | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 49 | 49 | - | – | |
| CDD | 42 | 324 | 283 | 1.7274E-74 | – | |
| TMHMM | 50 | 72 | 23 | - | – | |
| Phobius | 50 | 72 | 23 | - | – | |
| Phobius | 73 | 77 | 5 | - | – | |
| TMHMM | 77 | 99 | 23 | - | – | |
| Phobius | 78 | 100 | 23 | - | – | |
| Pfam | 80 | 340 | 261 | 6.9E-34 | ||
| Phobius | 101 | 111 | 11 | - | – | |
| Phobius | 112 | 132 | 21 | - | – | |
| Phobius | 133 | 171 | 39 | - | – | |
| Phobius | 172 | 191 | 20 | - | – | |
| TMHMM | 173 | 195 | 23 | - | – | |
| Phobius | 192 | 217 | 26 | - | – | |
| Phobius | 218 | 237 | 20 | - | – | |
| TMHMM | 218 | 240 | 23 | - | – | |
| Phobius | 238 | 242 | 5 | - | – | |
| Phobius | 243 | 267 | 25 | - | – | |
| TMHMM | 245 | 267 | 23 | - | – | |
| Phobius | 268 | 378 | 111 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. |
Expression pattern of LotjaGi5g1v0343700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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