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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0347900 |
| Transcript ID | LotjaGi5g1v0347900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G39350.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350; TrEMBL-Plants: tr|K7K4F6|K7K4F6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0347900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66412872..66414847) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGCAAAGCGAAGAGGATTGTGACCACTGCAACACAGTGCGAATCTCTCTTGCGAAAATTTTCAGCTTCGAATTCCCT TTCAGAAACCAAAAAGCTTCATGCCTTCATCCTCACCTTTGGCCTTCTCTCTTCATCCACCAACCTTTGCTCTAAGCTTG CTACAACCTACGCACAGTGCCACCATGCTTCCTATGCCTTCCATCTGTTTGATAAATTGCCCCAACGAAGCTTGTTTTCA TGGAATACTATGATGAGGATGTATGTTCAAATGGGTCGCCCCCATGATGCCCTGAACTTGTTTGTTCAAATGCTCCGTTC GTGTCGGACTCTACCCGACAACTTCACGTATCCTATCGTTATCAAGGCTTGTAGTGACTTGTCCTTCCTTGATATGGGTG TTGGAGTTCATGGGATGACATTTAAGGCTGGCTTTGATTCGGACACATTTGTTCAGAACTCTTTGCTGGCAATGTATATG AGTGTTGGGGAGAAAGATCAAGCACAACTGGTTTTTTACTTGATGAAGGAACAAACCGTGGTGTCTTGGAATACCATGAT TAATGGGTACTTTCGGAATAACTGTGCAGAGGAGGCGTTGAGGGTTTATAACAGAATGATGGATGCTGGTGTGGAGCCGG ATTGTGCTACTGTTGTTTCAGTTTTGCCAGCTTGTGGGATTTTGAAGAATGTGGAGCTTGAGAGAGAGGTTCATGCGTTG GTCAAGGAGAAAGGGTTTTGGGGGAATATGGTGGTTAGGAATGCGATGCTGGACATGTATGTTAAGTGTGGCCAGATGAA AGAAGCATGGTGGTTAGCTAATGAGATGGATGAGACGGATGCAGTGACATGGACAACTTTGATTAATGGATATATTCTGA ATGGTGATGCAAGAAGTGCTTTGATGCTTTGGAGCCAAATTCAGTTAGTTTAGCTTCTCTGCTATCAGACTGTAGCAGTT TGGGTTCTTTGGACTATGGCAAGTGCCTTCATGCATGGGCAATACGGCAAAAGCTCGAGTCTGAGGTCATAGTAGAAACT GCCTTGATTGATATGTATGCCAAATGCAATTGTGGCAACCTCAGTTATAAAATGTTCATGAAAACCTCTAAAAAGAGAAC AGCCCCATGGAATGCTGTTCTATCTGGGTTCATACATAATAGCCTTGCAAGAGAAGCAATACAACTCTTTAAACAAATGT TAGTGGAAGATGTACAACCTGACAATGCAACCTTTAATAGTCTTCTTCCTGCATATGCTATTCTTGCTGACCTCAAACAG GCAATGAACATACATTGTTACCTTATAAGGTCAGGATTTCTTTACAGACTTGAAGTAGCAAGTATTCTAGTTGACATATA CTCAAAGTGTGGAAGTTTAGGATATGCTCACCACATTTTTAATATAATTCCTCTGAAGGACAAGGATATTATTATTTGGA GTGCCATAATTGCAGCTTATGGGAAGCATGGGCATGGTGAAATGGCGGTGTCACTTTTCAATGAGATGGTTCAATCTGGA GTAAAACCAAATCAAGTCACTTTCACCTCTGTTCTGCATGCTTGCAGCCATGTGGGTTTGGTTGATGAGGGTTTGTCTTT GTTCCAGTTTATGCTTAAACATCATATTATTCCCCTTGTTGATCATTATACATGCATCATTGATCTTCTTGGCCGTGCTG GTCGATTGGATGATGCATATAATCTTATTAGAACAATGCCTATAAAACCTAACCATGCTGTATGGGGGGCACTACTTGGC GCTTGTGTGAGTCATGAGAATGTTGAACTGGGAGAGGTGGCTGCTAGGTGGACTTTTGAGCTTGAACCTGAAAACACTGG AAACTACATTCTGTTGGCAAACCTTTATGCTGCTGTAGGAAGGTGGAGAGATGTAGAGAAGGTTAGAGATATGGTAAATG AGGTGGGATTAAGAAAATTACCTGCTCAAAGTTTAGTTGAGGTGTGAAGTGTGTGA
CDS sequence (LotjaGi5g1v0347900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAAAGCGAAGAGGATTGTGACCACTGCAACACAGTGCGAATCTCTCTTGCGAAAATTTTCAGCTTCGAATTCCCT TTCAGAAACCAAAAAGCTTCATGCCTTCATCCTCACCTTTGGCCTTCTCTCTTCATCCACCAACCTTTGCTCTAAGCTTG CTACAACCTACGCACAGTGCCACCATGCTTCCTATGCCTTCCATCTGTTTGATAAATTGCCCCAACGAAGCTTGTTTTCA TGGAATACTATGATGAGGATGTATGTTCAAATGGGTCGCCCCCATGATGCCCTGAACTTGTTTGTTCAAATGCTCCGTTC GTGTCGGACTCTACCCGACAACTTCACGTATCCTATCGTTATCAAGGCTTGTAGTGACTTGTCCTTCCTTGATATGGGTG TTGGAGTTCATGGGATGACATTTAAGGCTGGCTTTGATTCGGACACATTTGTTCAGAACTCTTTGCTGGCAATGTATATG AGTGTTGGGGAGAAAGATCAAGCACAACTGGTTTTTTACTTGATGAAGGAACAAACCGTGGTGTCTTGGAATACCATGAT TAATGGGTACTTTCGGAATAACTGTGCAGAGGAGGCGTTGAGGGTTTATAACAGAATGATGGATGCTGGTGTGGAGCCGG ATTGTGCTACTGTTGTTTCAGTTTTGCCAGCTTGTGGGATTTTGAAGAATGTGGAGCTTGAGAGAGAGGTTCATGCGTTG GTCAAGGAGAAAGGGTTTTGGGGGAATATGGTGGTTAGGAATGCGATGCTGGACATGTATGTTAAGTGTGGCCAGATGAA AGAAGCATGGTGGTTAGCTAATGAGATGGATGAGACGGATGCAGTGACATGGACAACTTTGATTAATGGATATATTCTGA ATGGTGATGCAAGAAGTGCTTTGATGCTTTGGAGCCAAATTCAGTTAGTTTAG
Protein sequence (LotjaGi5g1v0347900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKAKRIVTTATQCESLLRKFSASNSLSETKKLHAFILTFGLLSSSTNLCSKLATTYAQCHHASYAFHLFDKLPQRSLFS WNTMMRMYVQMGRPHDALNLFVQMLRSCRTLPDNFTYPIVIKACSDLSFLDMGVGVHGMTFKAGFDSDTFVQNSLLAMYM SVGEKDQAQLVFYLMKEQTVVSWNTMINGYFRNNCAEEALRVYNRMMDAGVEPDCATVVSVLPACGILKNVELEREVHAL VKEKGFWGNMVVRNAMLDMYVKCGQMKEAWWLANEMDETDAVTWTTLINGYILNGDARSALMLWSQIQLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 140 | 140 | 4.0E-16 | ||
| PANTHER | 22 | 134 | 113 | 1.4E-45 | – | |
| ProSiteProfiles | 46 | 76 | 31 | 5.009 | ||
| ProSiteProfiles | 77 | 107 | 31 | 10.205 | ||
| Pfam | 78 | 125 | 48 | 1.7E-10 | ||
| TIGRFAM | 79 | 107 | 29 | 5.7E-7 | ||
| ProSiteProfiles | 113 | 147 | 35 | 6.292 | ||
| PANTHER | 120 | 232 | 113 | 1.4E-45 | – | |
| Gene3D | 142 | 232 | 91 | 2.3E-10 | ||
| ProSiteProfiles | 148 | 178 | 31 | 6.917 | ||
| ProSiteProfiles | 179 | 213 | 35 | 13.066 | ||
| Pfam | 179 | 225 | 47 | 1.9E-12 | ||
| TIGRFAM | 181 | 215 | 35 | 3.3E-12 | ||
| Gene3D | 233 | 309 | 77 | 1.6E-13 | ||
| PANTHER | 233 | 306 | 74 | 1.4E-45 | – | |
| ProSiteProfiles | 249 | 283 | 35 | 8.857 | ||
| Pfam | 254 | 277 | 24 | 9.1E-4 | ||
| TIGRFAM | 282 | 307 | 26 | 0.001 | ||
| Pfam | 282 | 307 | 26 | 2.3E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0347900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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