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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0350500 |
| Transcript ID | LotjaGi5g1v0350500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine protein phosphatase 2A regulatory subunit B; TAIR: AT3G26020.1 Protein phosphatase 2A regulatory B subunit family protein; Swiss-Prot: sp|Q9LU89|2A5N_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform; TrEMBL-Plants: tr|A0A072VRL4|A0A072VRL4_MEDTR Protein phosphatase 2A regulatory B subunit family protein; Found in the gene: LotjaGi5g1v0350500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66649820..66652812) extracted from Lotus japonicus Gifu genome v1.2.
TCACAACACAATAATGTGGAAGTTCTAATGCTTTGCTAACATTTGGAAATACCAATGTTTCTTGTGCAAAGGCATCACCG TCTTCTTGGATTTTATATACAACACAAGAACATGTCCTGATTCTCTATATCAATTAGGCTTTTGGATGGAGCAGAAATAA CTAGAACTTTGTGAAACAAGGAGAAAGCAGAGAAGAAGAGATCATGGGAAGCCAGAAAAACACAACATCAACAACAAGTA GTCCAAGGAAAACCAGCCCAAGAACACTTCATGACCTATTTGAGCAGGAAAAGCCTCTTTTCCCCATCCCATCTTCTCCC ACCACTTCAGCAAATGAAGAACTTCTCTCTGCTGTTCACTATTGCACCTTTGTTTTCACCTTCACTGATCCTACAGAGTC CCCTGCACAAAGAGACTCCAAGAGGCACCAACTTTCAAGGCTCATGACCATGTTGAAGTCCTTCAAGAAGCCAATGCATG AGAGGTCACAGGTAGGGGTAAAATGTGGTGGCGGTTGCTCCGAAGAGAATTTTTTTCTTAATAGAATAGTATTCAAATGT TACATTTTCCCTATAACTGTTAGTTTTGCTTAATATGTTAAATTTTCGCCACTCTAACTCATTTGTTCTGGTTTTGTCCC TGATTATAAGGTTTTGGGACCTTTGGTGGCGATGATCTCAGCCAACCTCTTCAGGCCACTCCCTCCACCTCTCAATCCTG CTTCTTGCATCTCAGATTTGCTTGATGAAGAAGACCCCATCTCCACATTTTCACCTTCATGGTCTCATCTCCAACTAGTC TATGAAATCCTTCTCAGGCTTGTTAGCTGTGCAGACCCCAAAACACTAAGAGAGCACATAGATCACTCTTTTCTCCTCAA TCTGCTAACACTTTTCCAATCTGAAGATCCAAGGGAACGTGAGAGTTTGAAAAATGTGTACCACAAGATGTATTCCAAGT TCATCTCTGACCGTTCCATGATGAGGAAATCAATGACTGATGTGCTCTTGAACTATGTGTTTGAGACAGAGAAGCATCCT GGTATTGCAGATTTGCTTGAGATATGGGGAACCATAATCAATGGCTTCACTGTGCCATTGAAGGAAGAACACAAGTTGTT CCTCATGAGAGTGCTGATTCCTCTGCACAAGACGAAGGGGATGCAAGTGTACCATAAGCAACTTGCTTACTGTGTGTCAC AGTTTGTGCAGAAGGAGCCTATGCTTGGAGGAGTCATTGTTAGAGGGATTTTGAAGTACTGGCCTGTCACAAACTGTCAA AAAGAAATCTTGCTAATTGGGATGCTGGAAGATCTTGTGGAGAATTTGGATCCTGATCAATATAGAAAGTTGGCCTTGCC CATATGTACTCAAATTACAAAATGCATAAACAGTTGGAATTCTCAGGTAAGTCTATTAGTGGCCATAATTTATTCTACTT CTATACTCATGCTTTGCTTTGTGCTCTCTATTTCAGCTGCAAATTTAAGCCATTTACTTCACCCGAATTCAATGATAGTA TGAGAGGGAAATGTATTTACTAGAGTCAGGTAATGCCTACATTCACGCAATGAGTCGTCCAATCAAAAGAAGTCAACTCA GATTTTGAACTTATATCCGATTTTGATGAAATATACGAACCAATCAATGACTCCGATTGCGTGAATGAATGGTATCTCAG ACTATAAGGAACCTGAATTCATACCAGAGCAAATTCTAGATCTATCTAGTGTGTCATCCATAATTGGGTCATCACGGATG TTTAGTCATGCAAACTCCACGCTGAAGTTTGCACGGCTGGACACCTGTGAGTGTCTCATTTATGGGTGACCCAACAAACA AATTTAGGATAGAGTCTGATCAAATCTTGAATTCGAGCTAGACCCGACTCTACCTCAAATGAAAGGTCAGGGATTTGAGC TTGACCCTTTATATGGAACCTATTCTAGATATTCAGGATCAACCACCAAAATACACATAACTTTTGCATTTGATAAACAC TTGACATTTTTTTGTGATACATAAATTTGGGTTAGGTGGCAGAACGTGCACTGTATGTATGGAACAATGAGCAGTTCTTC AAAATGGCATCAACCGGAACAGTGGAAGTGTTTCCTATCATAATTGAAGGAATGGAAAAGAATCTAAAGTGGCATTGGAG TAAGAGTGTTAGACAACTAACAGAAAGTGTGAAGGTGATGCTGAAAGACATGGATCCAGATCTGTATGCAAAAGTTGTGA TGGACATGCAAACCAAAGAATCAGTGGCACACAAGCAAGATGTGGAGAGAAAAAAGAAATGGGAGAGAATAGAATTGGCG GCTGCTAAGAGCCAGTTTCTTAATCCACAACTAGGGGTGGGAATAGGCCAGGCCGTTCGTAGGGGCCTATGGCCTAGCCT ACCACAGGCCCAGGCCAGGCCAGACCAAATTGGTAAATAGCCAAGGCTTAGGCTTTTTGAAAAGCCTATTTAGTTAAAAA GGCCAGGCTCAGGCCATTCAACAAGCCTTGTAAGCCTTACAGGCTAGCCTATTTAAGTAAATATGATTAGTATTTTTTGG TAAATTGTAAATATGATAAGTATAAATATATTTTACCCTTGATGATGTCTATATATTAAAAATTTATAATAATATCTTGA TATTATATACTTATTGAGATTTTAGTATATTTAAGCAAATTGACTTATATAACGATTCAAAGTTATAAGTCTTTTTAAAA ATAAATATATGACGTATTTAAATATCTTAATATGGCGTGTGATTTTAAATTGACTCTTCAACTCTAAGAAACCAACATAA TCTCGTTTAGTTTCATCACGACCTATTAGCTGATAATATTGTAAGTCTGATTGTTGAAAATATTATTTTAGTATAATTTA ACCCGTTAGCTTATAAGTTTGATAACTTCTTTACAGATAAATTTATTAACAAACGTAAAACTCTTGTTGTGAAACGGGTC TTTAAACAGGCTGCCAGGCCAAGCCAGGCTTTC
CDS sequence (LotjaGi5g1v0350500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGCCAGAAAAACACAACATCAACAACAAGTAGTCCAAGGAAAACCAGCCCAAGAACACTTCATGACCTATTTGA GCAGGAAAAGCCTCTTTTCCCCATCCCATCTTCTCCCACCACTTCAGCAAATGAAGAACTTCTCTCTGCTGTTCACTATT GCACCTTTGTTTTCACCTTCACTGATCCTACAGAGTCCCCTGCACAAAGAGACTCCAAGAGGCACCAACTTTCAAGGCTC ATGACCATGTTGAAGTCCTTCAAGAAGCCAATGCATGAGAGGTCACAGGTTTTGGGACCTTTGGTGGCGATGATCTCAGC CAACCTCTTCAGGCCACTCCCTCCACCTCTCAATCCTGCTTCTTGCATCTCAGATTTGCTTGATGAAGAAGACCCCATCT CCACATTTTCACCTTCATGGTCTCATCTCCAACTAGTCTATGAAATCCTTCTCAGGCTTGTTAGCTGTGCAGACCCCAAA ACACTAAGAGAGCACATAGATCACTCTTTTCTCCTCAATCTGCTAACACTTTTCCAATCTGAAGATCCAAGGGAACGTGA GAGTTTGAAAAATGTGTACCACAAGATGTATTCCAAGTTCATCTCTGACCGTTCCATGATGAGGAAATCAATGACTGATG TGCTCTTGAACTATGTGTTTGAGACAGAGAAGCATCCTGGTATTGCAGATTTGCTTGAGATATGGGGAACCATAATCAAT GGCTTCACTGTGCCATTGAAGGAAGAACACAAGTTGTTCCTCATGAGAGTGCTGATTCCTCTGCACAAGACGAAGGGGAT GCAAGTGTACCATAAGCAACTTGCTTACTGTGTGTCACAGTTTGTGCAGAAGGAGCCTATGCTTGGAGGAGTCATTGTTA GAGGGATTTTGAAGTACTGGCCTGTCACAAACTGTCAAAAAGAAATCTTGCTAATTGGGATGCTGGAAGATCTTGTGGAG AATTTGGATCCTGATCAATATAGAAAGTTGGCCTTGCCCATATGTACTCAAATTACAAAATGCATAAACAGTTGGAATTC TCAGGTGGCAGAACGTGCACTGTATGTATGGAACAATGAGCAGTTCTTCAAAATGGCATCAACCGGAACAGTGGAAGTGT TTCCTATCATAATTGAAGGAATGGAAAAGAATCTAAAGTGGCATTGGAGTAAGAGTGTTAGACAACTAACAGAAAGTGTG AAGGTGATGCTGAAAGACATGGATCCAGATCTGTATGCAAAAGTTGTGATGGACATGCAAACCAAAGAATCAGTGGCACA CAAGCAAGATGTGGAGAGAAAAAAGAAATGGGAGAGAATAGAATTGGCGGCTGCTAAGAGCCAGTTTCTTAATCCACAAC TAGGGGTGGGAATAGGCCAGGCCGTTCGTAGGGGCCTATGGCCTAGCCTACCACAGGCCCAGGCCAGGCCAGACCAAATT GGTAAATAG
Protein sequence (LotjaGi5g1v0350500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSQKNTTSTTSSPRKTSPRTLHDLFEQEKPLFPIPSSPTTSANEELLSAVHYCTFVFTFTDPTESPAQRDSKRHQLSRL MTMLKSFKKPMHERSQVLGPLVAMISANLFRPLPPPLNPASCISDLLDEEDPISTFSPSWSHLQLVYEILLRLVSCADPK TLREHIDHSFLLNLLTLFQSEDPRERESLKNVYHKMYSKFISDRSMMRKSMTDVLLNYVFETEKHPGIADLLEIWGTIIN GFTVPLKEEHKLFLMRVLIPLHKTKGMQVYHKQLAYCVSQFVQKEPMLGGVIVRGILKYWPVTNCQKEILLIGMLEDLVE NLDPDQYRKLALPICTQITKCINSWNSQVAERALYVWNNEQFFKMASTGTVEVFPIIIEGMEKNLKWHWSKSVRQLTESV KVMLKDMDPDLYAKVVMDMQTKESVAHKQDVERKKKWERIELAAAKSQFLNPQLGVGIGQAVRRGLWPSLPQAQARPDQI GK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 447 | 447 | 2.4E-216 | – | |
| MobiDBLite | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 447 | 447 | 2.4E-216 | ||
| Pfam | 35 | 444 | 410 | 1.8E-142 | ||
| Gene3D | 39 | 442 | 404 | 1.3E-139 | ||
| SUPERFAMILY | 44 | 439 | 396 | 2.09E-118 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Protein phosphatase type 2A complex | A protein complex that has protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic, scaffolding, and regulatory subunits. The catalytic and scaffolding subunits form the core enzyme, and the holoenzyme also includes the regulatory subunit. | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | Protein phosphatase regulator activity | Modulates the activity of a protein phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a protein substrate molecule. |
Expression pattern of LotjaGi5g1v0350500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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