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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0351200 |
| Transcript ID | LotjaGi5g1v0351200.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DDB1-and CUL4-associated factor; TAIR: AT4G35140.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8N7N5|DCAF8_MOUSE DDB1- and CUL4-associated factor 8; TrEMBL-Plants: tr|A0A0B2RWF4|A0A0B2RWF4_GLYSO DDB1-and CUL4-associated factor 8; Found in the gene: LotjaGi5g1v0351200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66686186..66691528) extracted from Lotus japonicus Gifu genome v1.2.
TGGTGCCACGTATAAACGTCCCCCGCCACTTTGACGTGACCATCATCCATCACCATCACCATCACAAATCGAAGGACCCC ACTCTCACTACACCACACCACACCACACCACACCGAACCCATTCACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTC TTCTTGTTCTTCTAGGTTCGTTTCCACCGCAACCCATTCATCAATCACCATTCATATTCACAGGGTTTTCATTCTTCGCT TACCCTAATCGTTGTTTTCTTCTTTCTTTCTTTCTATTCATGTTCCGCAGGATGAACAAAAGACCCAGACCCTACGCCAA CAAGGCTCTTCCCGATCTCTGGAATCGCGAACTCGGCGAGCTTCCCGCCCGGAGTTTCCCTCACCGTCTCGGCGGCTCCG AGGTTCAATTTCTCATCGTCTTTTCCTATATATTCATGGATTGCACTCAATTCTTAACACTGATCGATTATTAGGGATTT TGAAATTGAAAACCTAACCTTCTTATCTTGTTCTGGGTCTCGGATTAATAATACCATGCATGTTTGATTCAATTCTCACT CACACAACACAAGCTTCTCCGAATCAATTCTAGAATGATTAAACATGCATTAGGGCTTCTTTTGAATTTACCATTGTTTT ATTTTGACATCTGTGGATATTAATGTGTTCTGTGATGAAATTCTAAGCTTCATTTTGATCAATGTTGTGTGTTTTTAGGA TCTTGTGCTTCGACTTGAACAGTTCACGAAGCTGGAAAAGCACAGAGGTTGTGTGAACACTGTAAGCTTCAATGCAGATG GTGACATTCTGGTGTCGGGTTCTGATGACAGGAGGGTTATTCTCTGGGACTGGCAAACTGGGAAAATTAAGCTGTCTTTC CATTCTGGTCACCAGAACAATGTTTTCCAGGCAAAGATGATGCCTCACTCCGATGATCGAAGCATTGTCACTTGTGCTGC GGATGGACAGGTACACTACACCCTTTTATCTCAAATCCTTTGACTCTACGATTGGATTTTTTCTTGTTCCATTTGAATGT GTTAATAGACCATGTGCATTTCTCATTCATCTATGTCACATTGTGGTTGTGGTGAACGGTCCCGTTCCAAATTTTGGTTT CAGGAGGGGTCGTTTGTTTGCCAAACTTGTTTAAATACAATGTTGTTTTATCATGCAATGTACATGCATAATAAATCTTC TTAGGCCATTTTGATAAAAGAAGTGTGTTTCCTTATGCAACCTCTCAATTTAGGTGAGACATGCTCAAATTCTTGAACAA GGAAAAGTGGAAACCAAGTTATTAGCCAAACATCAAGGACGGGCTCATAAATTGGCTATTGAGCCTGGTAGCCCTCATAT ATTTTATACCTGTGGCGAGGATGGAGTGGTACAGCATGTGAGTAATTGATTCTTTGCTTCCTTTAATTTTTTTATTATTC ATCCTTTAGTTATCTCACATTAAGCATTTTTACAGTTTGATCTGAGAACTGGGGCTGCAACAGAACTTTTTACATGCCAG CCAATCAATGATCGATGGACTTACATGCCAGTAATCCATCTTAATGCAATTGCAATTGATCCAAGGAACCCAAATCTCTT TGCAGTTGCTGGGTCTGATGAGTATACTCGACTTTATGATATCCGCAAGTACACGTGGGATGGATCAACTGATTTCGGTC AGCCGACCAACTTCTTTTGCCCTCCACACTTGATTGGGGATGAGCGAGTGGGAATAACAGGCTTGGCCTTTTCTGAACAA AAGGAGCTTCTTGTGTCCTACAATGATGAGTTCATTTACCTTTTTACACATGATATGGGTTTGGGACTGAACCCTGCTGC TCCCGGGTCCCCTGTCTCATTGAATAGTGATGCAAGTGAAATGGGAGGTAGTCATGGATCTGCGGCATCTCCATCAAACA TGGATTCTGATGAGAAAATCACCCCGCAAGTTTTTAAGGGACACAGGAATTGCGAGACAGTAAAGGGTGTTAACTTTTTT GGACCTAATTGTGAGTATGTAGTGAGTGGATCAGACTGTGGTCGGATTTTCATTTGGAAAAAGAAAGGTGGTCAGCTTGT TCGTGTCATGGAAGCAGATAAGCATGTTGTGAACTGCATTGAGTCTCATCCTCATACAATGGTTCTTGCAAGCAGTGGTA TTGAACACGACATCAAGATATGGACTCCAAAGGCCCTTGAGAAAGCTACTTTGCCCAAAAATATTGAGCAGGTATGAATT CTGTCTTCGTGAGCTAATTATCGCAAGTCAAAACTCAGAAGCACAAAATCATATTATTATCTGAGGATGATATCTTTTAT GTGTAGGAAGCTTTTGTATCCCATATAAATTCCTGACTGTGCCTGTTTCTATAAAAAAACTTTTTTTTAACATAAGAACC CAATAAGTAATGTGAAGATGTTGTCTATAGTTTTTTTGGCCCTCTTCAATCTCAACCAGTTCAAGAACCGAAAGACTAAT ATCACCATAAATTTGAAAACCCTTCCCATTTACTATGTAATGATGGATTCTTTGCGAACCATCCCTTGATCACCAGACAT TGTTGATTTGATTATGTAGCAGTAGCACAGGACAAAATAGTGCTTACTTACCAGCAAAGTTGTTGCCAAGGCAGTATTCA ATATTTTTTTCTAAAAAGAGTAATATGTGCTAGCAGAGTGATTTTTGGAGGGTGATTTATTGAAGGATTGCAGTAGTCAA GACTTGAGAGCTGAGAGCCTAGACATTTTCGTGATGATGTGCTGGCATGTTATGAAAATCTAGGGAACTATTAAAATATG AGTGCCGTGAGAGAGTGAATAGTCAACTTGGTCCGTGAAATATTTTGCTGCTGACAAGTTAGTCCCTGGAAGAAGGAAAA TATGTTAAAAAGTCCTAGAATGTGTAAAACGTCGGTCAAATTAGTCCCTATGGTCGGATTTGGTCAACCAAAACGTCTGT CAAGTTAGACCCTATTGGCGTTTTACACATTCAGGGACTTTTGAGTTTTGATTCTTTTGAATGTATATCCTTCTTTTCAA GACTAACTTGCTAGCGGCAAAGTCTTTCAGAGACCAAATTAACCATTCATTCGCCATGAGAATATCCCTTCTGTGAATAT TTATTTTCCAGAACCGTTTTTGTGGTTGCCTTGCATCACATGATATTGGTATAAAATAAACTTTTAAGGGAAAACTGATT AACTGAGTTCTCTTGCCCGGGCAGTTCATTTGGGGATTCTTGTAGAGCAGTGTTTGAAATGATAGACTGGGTTTATTTGA ATATTTAACCACGGTAACTGGGAACTAGTCTAGGTATCAGCCGTTCAGCATAGTTAAGACCTAATTACTGATTTCATTGA GAACCAGTGTGAACCGTGCTTTTTTGCAGTAAACATCTGAACTGGTACTGTTTCTGTTCGGAACGGTTCCCACTTAGATC ATGTGTCATGCTGAAAATGAGTTGGATACCTTTTGGCATCAGTGCAAAAGACGTAAGCACTCACTTTGAGTCAAAGTGAA CAGATCTCTTTTTATGGATTGGGATGAAAGTCCGTCAAGTTAACTCAATTGATATCCAAAAGTACACTAAAACTGATAGT CTGAAGTTTGAAATGCTGCCCATGGGGAGTTGGGTAGGTTTTATAAATACAAAGCATGATAAATGGTATCTACAAACGAG TGATTGCACATCTTTAAATATTCATCATCTACCTAAAAATATTTACTCACTGATTTAAAAGAAAATTTATTATATTTGTT AGGGAAGTCCTAGAATAACATGATTTGAACACCAATACTGGTCTGCTTATGTTAGATGATAAATCACAGTAGTAATGATA TTTATGTTACATGATTGAACTGTTTGAGCAGCAGAGGAACTAATTTCTCTGTTGGTACTGACTTCTTTGAAAAAGGTTCC CGTGTTTGATCAAATTCATTGGTTTACCATTCATGGTGATGATGATGACGACGACGAAGACGATGATGACAATATGTTTG ATGATGATATGTTTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAGGAGGAGGAGGAGGAGGAGGAG GGGGAGGAGGGGTTGGAGGAGGATGCTGACAACGGTTGTGAGGATGATGATTGTATGGATGATTTTGGCAATGATTGTAA TGATGATGACAATATTGGTGTTGGTGACGATAATAATGATGAAAATGGCAACGATGATAGTTTTTCTGGTGGTTTGTAAT GATGAAATTGATGAAAATTTTGTGTGTCCAACAGAAACCCAGGGCTAGGGGCTGGATGTACCAGATGGCTTCTCCAGAAG ACCTGATGTTGCAACTGTTTTCACTTCCAAGACGGAGGCCTAGGACAAATCACAATCCAGATAGCTCAACTACTGACCGA GAACTTCTGGAGATGATATTAACATTCAATGCCAATAGTGACAGTTCAAACCATGATGATGATGATGGTGGTGATGATGA TGATGGAGACGCAACCAGCCAAGAGGACTTGTTCAGTTGAGCCATACACCATGCCTTCAAAATGAATGGTAGCAATTGTA CATAACATAGGATTAAAAATAAGTCGATGGAATCTTGCATACTATGGCTAAACATTAGGATTTATGAATATAACCACCCT TAAGTTTGTATCTGTTGTCATTTTATTGTGATTTTTGTTTATTTTGCGCACAGGTTTAGTTGTTTGTGTTTGTGTGACGT AAATTGATTTTCTGGACCATTTTATCCTTCGGAATCATGTCAAATACCAGATCTTCACCCTTCTAAACCATTTCACATAC CTGATTTGGTAAAATAGGAATCCTAATGAAATATTTGCATGAATTTTGTTGAATTGATTTTAGTTTAAGTGATTAACGGT GAAGTGTTTACTATTTATATTTTGATTCATTAGCGGACAGTATGATTTTTATAGGGTAACACGGTTTGGATTGTATTGAT CAAAATTACTTTTGGGTGTCTAATTATCAAAATAGATTGTAAGGTCTTTAGATATTTATCTAGGTTCTTCTGTATCATAT TTAATTTAATTATCGTTAGCATAATTAAAAGTTAATTATCTTTAGCTAGGTTCAATAACAAATTTAAAAAAAAAAAGTAA GAATTAGCTGGACACACACACTAACTAATAAGAAGAAGAAGATTATGATGATGATAAATCTTTCATAAAATCAAGGACTT TGAAGTTGACTTTTTGTATGAAGTGACTAATAGGCAATACTCAACCTATTTTAATTATTTACATTTAAAATCTAAATTAG CTTCCATATACATTTTGTAATATAATTTTCAATGATTAATTATCTTAACAAATTTATTTTTCC
CDS sequence (LotjaGi5g1v0351200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCGCAGGATGAACAAAAGACCCAGACCCTACGCCAACAAGGCTCTTCCCGATCTCTGGAATCGCGAACTCGGCGA GCTTCCCGCCCGGAGTTTCCCTCACCGTCTCGGCGGCTCCGAGGATCTTGTGCTTCGACTTGAACAGTTCACGAAGCTGG AAAAGCACAGAGGTTGTGTGAACACTGTAAGCTTCAATGCAGATGGTGACATTCTGGTGTCGGGTTCTGATGACAGGAGG GTTATTCTCTGGGACTGGCAAACTGGGAAAATTAAGCTGTCTTTCCATTCTGGTCACCAGAACAATGTTTTCCAGGCAAA GATGATGCCTCACTCCGATGATCGAAGCATTGTCACTTGTGCTGCGGATGGACAGGTGAGACATGCTCAAATTCTTGAAC AAGGAAAAGTGGAAACCAAGTTATTAGCCAAACATCAAGGACGGGCTCATAAATTGGCTATTGAGCCTGGTAGCCCTCAT ATATTTTATACCTGTGGCGAGGATGGAGTGGTACAGCATTTTGATCTGAGAACTGGGGCTGCAACAGAACTTTTTACATG CCAGCCAATCAATGATCGATGGACTTACATGCCAGTAATCCATCTTAATGCAATTGCAATTGATCCAAGGAACCCAAATC TCTTTGCAGTTGCTGGGTCTGATGAGTATACTCGACTTTATGATATCCGCAAGTACACGTGGGATGGATCAACTGATTTC GGTCAGCCGACCAACTTCTTTTGCCCTCCACACTTGATTGGGGATGAGCGAGTGGGAATAACAGGCTTGGCCTTTTCTGA ACAAAAGGAGCTTCTTGTGTCCTACAATGATGAGTTCATTTACCTTTTTACACATGATATGGGTTTGGGACTGAACCCTG CTGCTCCCGGGTCCCCTGTCTCATTGAATAGTGATGCAAGTGAAATGGGAGGTAGTCATGGATCTGCGGCATCTCCATCA AACATGGATTCTGATGAGAAAATCACCCCGCAAGTTTTTAAGGGACACAGGAATTGCGAGACAGTAAAGGGTGTTAACTT TTTTGGACCTAATTGTGAGTATGTAGTGAGTGGATCAGACTGTGGTCGGATTTTCATTTGGAAAAAGAAAGGTGGTCAGC TTGTTCGTGTCATGGAAGCAGATAAGCATGTTGTGAACTGCATTGAGTCTCATCCTCATACAATGGTTCTTGCAAGCAGT GGTATTGAACACGACATCAAGATATGGACTCCAAAGGCCCTTGAGAAAGCTACTTTGCCCAAAAATATTGAGCAGAAACC CAGGGCTAGGGGCTGGATGTACCAGATGGCTTCTCCAGAAGACCTGATGTTGCAACTGTTTTCACTTCCAAGACGGAGGC CTAGGACAAATCACAATCCAGATAGCTCAACTACTGACCGAGAACTTCTGGAGATGATATTAACATTCAATGCCAATAGT GACAGTTCAAACCATGATGATGATGATGGTGGTGATGATGATGATGGAGACGCAACCAGCCAAGAGGACTTGTTCAGTTG A
Protein sequence (LotjaGi5g1v0351200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFRRMNKRPRPYANKALPDLWNRELGELPARSFPHRLGGSEDLVLRLEQFTKLEKHRGCVNTVSFNADGDILVSGSDDRR VILWDWQTGKIKLSFHSGHQNNVFQAKMMPHSDDRSIVTCAADGQVRHAQILEQGKVETKLLAKHQGRAHKLAIEPGSPH IFYTCGEDGVVQHFDLRTGAATELFTCQPINDRWTYMPVIHLNAIAIDPRNPNLFAVAGSDEYTRLYDIRKYTWDGSTDF GQPTNFFCPPHLIGDERVGITGLAFSEQKELLVSYNDEFIYLFTHDMGLGLNPAAPGSPVSLNSDASEMGGSHGSAASPS NMDSDEKITPQVFKGHRNCETVKGVNFFGPNCEYVVSGSDCGRIFIWKKKGGQLVRVMEADKHVVNCIESHPHTMVLASS GIEHDIKIWTPKALEKATLPKNIEQKPRARGWMYQMASPEDLMLQLFSLPRRRPRTNHNPDSSTTDRELLEMILTFNANS DSSNHDDDDGGDDDDGDATSQEDLFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 494 | 485 | 3.9E-264 | – | |
| PANTHER | 10 | 494 | 485 | 3.9E-264 | – | |
| SUPERFAMILY | 45 | 409 | 365 | 8.16E-50 | ||
| SMART | 46 | 85 | 40 | 1.5E-7 | ||
| Pfam | 51 | 85 | 35 | 6.4E-6 | ||
| ProSiteProfiles | 53 | 184 | 132 | 18.589 | ||
| ProSiteProfiles | 53 | 94 | 42 | 15.321 | ||
| SMART | 88 | 130 | 43 | 2.6 | ||
| SMART | 135 | 175 | 41 | 1.0 | ||
| SMART | 195 | 228 | 34 | 32.0 | ||
| SMART | 245 | 284 | 40 | 270.0 | ||
| MobiDBLite | 300 | 325 | 26 | - | – | |
| SMART | 326 | 368 | 43 | 0.62 | ||
| Pfam | 331 | 368 | 38 | 0.021 | ||
| ProSiteProfiles | 348 | 419 | 72 | 10.812 | ||
| SMART | 371 | 410 | 40 | 0.013 | ||
| MobiDBLite | 475 | 506 | 32 | - | – | |
| MobiDBLite | 486 | 500 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0351200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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