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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0352300 |
| Transcript ID | LotjaGi5g1v0352300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT3G19910.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related; TrEMBL-Plants: tr|I1NF64|I1NF64_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0352300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66816266..66822839) extracted from Lotus japonicus Gifu genome v1.2.
GAAACATATTTAAGCCTTTTGATTTCGAATATATATATTTATATTCTCTTGTTGATTCTCCTATTTCGATCATCATCGTC TTCTTCTTCTTCTTCTTCATCTCTCTCTGTTCGGCTTCTGCTTCACCGATGGAGAATGACAACACCGCCGCCGCCGACAA CAACACCGCCACCGCCGCCGTCACCGTCACGGCCAAAACCGGTTCAGGAGAAGTTGTGAAATCCACCAACCACAACCATG AAGAAGAGCATTCCAATTCCAATGGCGAGGAGCACATGACAGAGAAACTGGAAGAAGAAGAAAATCGAGAGGAAGGTGAA GAAGAAGAAGAAGGAGAAGGAGGAGAGCAGCCAACTGGATCTGCACCCAACCCTCGCCAGCCTTCCAGAACCCCTTTCTC CAATCTCAGCCAGGTCGACGCTGACCTCGCCCTCGCTCGAACCCTTCAGGAGCAGGTTCTTCTTCTTCTCCTTCCATTAT TACTAGTTTCTCATTGTTATTGAATGCCCTATTTTGTTTGTTATTTACTTTTCGAGTTTGGTTGGTGTGTGAGGATACGA AATTGAAGTGAATTTGTAGGTTTTAGAGCAATTCAAATTGATCAGGCACAGATTCTTATGAGTTATGCTTCTAGCTGTTC TAGCTGGGAGTGAAGCACTGTTAGTCTCTGATAGTTTAACGGTGTGGTTTTGATTGTTTAATAGGAAAGGGCATACATGA TGCTGAGAATGAATAATGATGGAAGTGACTATGGAAGTTGGGAGGGTGGAAGCTATTTGCATGATGAAGGGGATGATTTT GATGATCTGCATGATGGGAGTGATGTGGATGAGGATGAGGATGGCGATGAAGATGATGGCGATGAGGAGGGATATGAGAC TGAAGATGCATTTGATGTCCATGCTCATGCTGGCGCTGGAGAACATCCAATCATTGAATTTGACCCAGATGTGTTTTCAA GTGATGAAGCCTATGCAAGAGCATTACAAGAGGCTGAAGAGAGGGAAATGGCTGCTAGGCTGTTAGCTCTTGCTGGGATA CATGATGGTAAGTTCTATTGGAATATAATTTTGGGTGTTTTTTGTTTTTGTTTTTTTAAGGACTAACAGTTTCATTTTTA ATTACAGTGGAGCCTGAGGACATGGAGGAGCATGGTGGTAATTCACAGGTAAAATATATATTTTATATGTTTGTGCCAGT GTTATCAAATAGCGGCGCGGATTTTTGGCTAATCGCTATTCGCCGCTAAATAGCGGCCGAAATAGCGGATTTTTGGCTCT CCTTGATCGCAATTTGACAACACTGGTTTGTGATGCATTCATACCTACTCAGTTTAATATTTTCTCAGTGCAAATCACAC ACACCCATAGTCGTTGTATTATCGCAATTTGACAACACTGGTTTGTGATGCATTCATACCTACTCAGTTTAATATTTTCT CAGTGCAAATCACACACACCCATAGTCGTTGTATTAAACATTTGAAAAGTGTGAAACTTCAGCACCATAGAAAATGGTAC ATGTGTGCCCATATTCGGTTTAATTATAGGCATAGGATGATTCTATTTGAAAAATATTATGACTTATTAGCATTTTCTTT GAAACTTTATTAGTATTACTTAGTTCAGCTGTTTTCATTTACATATACCATGCTTGTTAGTTGTTACAAATAAGACAAAG TTCATGTAATATTTGATTGGTTGGTTTATGCATTGTGATTGAGGATGTTTTATTTGATATTTTAGGTAGCATTGCATGAA AATTCTATTAGCTTATTCTAAATGGTTCTAGCTTATTTTGTTTTTGGAAAATGCTTAATGGCTCGAATTGTTCTATATAT GAATCTGATGAATGATGTGGCTTTTTTCACGTGCACACGTTCCTTCTCTCTCTTACGATTCTCGCTTCTACTTCCATTCT CTATCGTTCTCTTTCCCAATTTCAATCCCAATTGCTCTGATCTCCATTCAAACATTAGGCTTCTGGAATCATGATTAACA TAGATCTGACTCTTGATGTGTTCACATGTGCCCGCGAGAGGAAGAGAATCACACTTTGCCCCTTTCTTCTTCCCCAACAC CACTTTCTCCCAATTAGAAGAAACAGCGCCGCACCCCCATCGTTGTCGACCATTCCTCTACTCTAGTCACCGCCGTGAGC CTTTACAGTAGCCGCCGTTGCTTGGGCATCGAAGGTAGTAGTGCGTGGCCGGTGGGAGTGGTGGCTCGAGGTCAAGTGAG GCGCTTGAGTTTCTGTCTCCACGCAGCCAGAGAATTAATTTCTTATTTTTCCATTTTAAAAAAATAAATAATAAGCAGAT TTCCTTTTTAAGTGAAGATAAACGTCATTCTTAAGGTTCGTATGGGGTCTTTGTCGAGCCAAATAGCAATGCTCTTTGTT TTTTCTTGCTTCCCCTTCTTGAGGCAAAATAATTATGCTTTGCTCAGTATAGAACTCTAGGGTTGCACAAAACTATTTTT CTCGAAATAAATTAATTACGCACAAATCTCTCTTCAGCATATTCCTATCTGCATACCTGTCAGGAACCAAGAATAGTACC TACTACTTGTAAATCTCTTAATTTCAGTTGGACCTTCTGCCTGAATATTGTCCATATTATTAACAGAATCTGGTTCATTG GTTTTGTGTGATTAGTTATTTCCAATTTTTATCCATGACAACACAGGCTCATTTGTCCTGAATGTAGACACAAAATTGTC GCTGAAGCTAGTCCACAGCCACTAGATTAGAATCATTAGATCTGAGTAGAACCCTCTGATGGGATTCTTTTCTTCCGCAT ATTTCAAATACCAGATGCATTTTTGCAGCTGCTGTGTCTAAAACATCACCAAGGTTCTTCATTGACCTTCTGAAATCCCA TGATATCCTCTTTATAGATCACCTTTCTTCTACATATTTCAAATACCAGATGCATTTTTGCAGCTACTGTGTTTAAAACA TCACCAAGATTCTTCACCAACCTTCTTAAAGCCCATGGTATCCTTTTTTTAGATCACCTCCCCATTGTTGTTGTTGTTCT TCTTCTTCATTGCTATTCCTGATATATCATCTTCATTTTGTTTATTATGTGTTATTATAATGATAGGATCAACAGGCTAG ATTGATGTTGATTAATCTTTTGGACAGTAGAATGTAATCATGCATCTCATTTACTACTGTCAATTCAATTCTCTAAATGC TTCTTGTTGATCATCTGATTCAGGATGCTTGGGAGGATGTTGATCCAGACGAACTTTCCTACGAGGTAACTTTGATCTAT ACCAAAGCTTGTGTAATGCTGCTCATTCTGCATGTGCCCTTCTGTCTCGTGTTTTGATAGTAAGCTTCAATTATTTCAGG AACTACTAGCATTGGGTGAAGTAGTTGGAACTGAAAGCAGAGGTCTTACAACAGATACTATTGCCTCTTTGCCTTCAATC AAGTACAAGACTGGGAATGATCAACATGGAAGCAATGATTCGTATGTGAAATAGTGTTACTTGTAACCTTAGCTGTGATC ATGATATACCGTGGTGCCTGATTTTGGTGGCCTTTTTCAGGTGTGTTATTTGTCGGGTGGACTATGAGGATGACGAGTCC TTGACAGTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTATGGTTATC TTCTTCCCCCACCTTATGTAATTTTTTTCATCATTTACATTTGGCTGCATATATGCTGTTGGTTCACATATTTGTGTGTA GTTATTAGTTTCTGTTAGGATAGAAGGTGTGGGCTAAAGTAGTTAGGGTTGTTAGTCAGTTAGTTAGAGGAGACTTAATT AGACAAATAGACAGGTCTGAATGCACAAAGAATAATTGAAGATGATTCTAGGAAATTGTGGAAAAAGAGAAATCCTTTGT TGAAGGGAAAAACTTTGGTTGTTGTTCTCACAACAGGACAGGTCTGTATGCGCAAACAACTATAGGGATGATTACTCAAC TGCTGCCACTAAAGTTGGCCATTGTACCTTTTCAGCACTAACATGGAAAATTATTGGAATCCATGTTTTACACACTTTTG AGCATTGAGAATTTTTGTAATGCATTGAATCGAAAGGAATTACTTATTCGGCATATGTTGAGGAAGTGTTTCCAGATTGC GACCTTGGGGACAAGGTTGCTTTTGTAGGGGCTTGTATTGTTAGGAATTCGGATAGAAGGAAGGACCGGAGTAAAGTATT TAAAATTAGTTAGGTAGTTAGTTAGAGGTGACTCAATTAGATAAAAATGGAAAATTAATAGAGGGGGTTCATTTTGTGAG TTTAAATGCGTAAAAGGAGAAATCCTTTGTTAAAGTGAAACCCTTGGAGAGACCTCTCTAGTCTCTCCTCTGTCATTCAA TAAAATTGTTCTAATCTTTTTTGTTTTAATTTTTTAATCAACTTCTCTATTCTTCTCTTCCAGTTTGTAAAAGTTTACTT TGCAAATTTTAGTTTGTGGTTCACTAGGTCCTTTATATATGCACTTCTGTGCATCTGGTTGAACAATGCTTACAGATATT CTTTTGTGGCTGTTAGTCTCTTCCTGCCTGTACTATGCTTAACATGTCTTGATTTGAACTGGATTGCATAGTACATACAT ATTAGATAACACTTCAAGTTCATAGTTTCTGGTTGCGAGTTATTGTTTTCCAGTTCCAGAGCACCTTTCATTTAGTCTAC TTTGCTGAAAAGTGTTGAAAAGCGTCCTTAGCACTCCTCTAGTAGATGATGGCATTATCCAATAAATATTATCTATGGAC TCAGCAATTAATTGCTAGACTATCATGTTTGATTAACACTTTGGAGGAAGCTTTGGCCTCTAGAAAAAATAATTAGTCAA GAGCTGAAACTTGAAAAGGATGTAAGTATAATAAATTGAAAAAAATATAATGAAAACGTATAAATCACAGCGTAAGTTTA CTCTGTTTCCACCTACAGAAAGAACAAAATCAGGTGTGAGACCAACACAGGAAGCAAGGATGATTGTTCAACCTCATTGT TCAGGACATATCTTTTATACTCAGCCCTTATTTATTGGATTTCTCCTTTTGCTTAAATTTCAAGATAAATCCAGTTCTCT ACTTGTATCAACAGTTCATAAATTACCCTGTATTTTGAACAAATTTGAATTATTTGTTTCGAGTTGTTTGCAGTGGAGAA GCAGTGATATAACCCTTGGTTCTTTGTCTGCAGGTTTGCCCTGTTTGCAGTACTGAGGTATCTGCTTCTGGGAGCAACTT ATAGGAGAATTCCATAGTTCTTAAACTTCTTGGCTTCAAATTGAAGAAAATTTGTGCAAGTTGGGAGTTTTTACCCCGTT ATTTAAGTAGCATTGCTTTGTTGGGGTGATAGTCATTGTGCTTTACTGTATCAAACTCCTACATTTTAAATGTAACTTAA ACTTTTGGATTCAGCTCTCTAGTTTGTCTTTTTACTTTTTTTAAAATGGAATGACTGGCATTATAGGGGCCAGTTTTTTT TACAGTTATTGACTTATTGTGTCTGGTATACTTTCTTTCCTCAGCTTAGTTTAGTAAGTTTTGCTTCATTAAACTTTATT TTATTTCCAAAGAGTTACGGATCCATGTTTTTTCTTCTTCTGTATATGGAATGCACTTCTAAGGACTTGTGCATTGAGTT TAGAGCAGCTCTTCGTAGGTGATATCCGAAACTGCTGATGTTAGGATTAAGGAAGTAGACTAACATCTCGGAACCAAGCT CAACGCGACCAACAAGATAAGATCGAGCGGTCTCTGCTCCTCTCAAAGGTAGTGTTTGGCCTGACTTTTTTTTTTTTACT TTTAAGTTATTTTTAAGCTAAAGTTGGGCCAAACACAATTTTTTAAAAGTTCTAAAATTTTAAGTGACTTATTTTTTATA ACAGGAAATTGAAATTAGTAACTTTTAAGAAAAAGTCAGGGAGAGGAGCTTTTTGCTTAAAAGTAACTTATTTTTTTCTT CCCTCGCGTGGATCTCTCGTTTCCCTATTCATCGCTTCAATTTTTAGCCAAACTGTCATGCTATCGCTACGCAGAAGATT GAATCACAGTGTCCGTTGGAATTCCTACTATAGTTTTGTAGAACTCTTGACAAATAGTTCCAGAACCTGTTTTATATTCC ACCCTTCTTTCCTTTATGTGCCTACAGGTGCAACACCAACGACAGTTCCTGTGCAGAAAACTTCATCAACCTCAACCAAT TCATCCACGCTTACAGCATGCTCTTCTAATTGATAGCCAAGATTACCATCAATTTCAATTACACATTTTCTGTCCAAACC CAAAACTGGACAGTTCCTAAAAGGAGAGGCCTCAAATACAAAGATCCTTTCCCCAGTGAAGTGGAGGAATCTAACGCTTT AATTTTGATGATTTTGCCAAATAAATTATCATGTTAATGAAGATGCCTGCTTCATCTATGGAAAATGTTTCTGGTTCTGT GTATAGATGAATGATATACAAATAAGGTTGCATACCAACCATTTGATAAAATGTTTAGATAAGTATACGTGAAAAGACAT AATTATGATCAAAC
CDS sequence (LotjaGi5g1v0352300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAATGACAACACCGCCGCCGCCGACAACAACACCGCCACCGCCGCCGTCACCGTCACGGCCAAAACCGGTTCAGG AGAAGTTGTGAAATCCACCAACCACAACCATGAAGAAGAGCATTCCAATTCCAATGGCGAGGAGCACATGACAGAGAAAC TGGAAGAAGAAGAAAATCGAGAGGAAGGTGAAGAAGAAGAAGAAGGAGAAGGAGGAGAGCAGCCAACTGGATCTGCACCC AACCCTCGCCAGCCTTCCAGAACCCCTTTCTCCAATCTCAGCCAGGTCGACGCTGACCTCGCCCTCGCTCGAACCCTTCA GGAGCAGGAAAGGGCATACATGATGCTGAGAATGAATAATGATGGAAGTGACTATGGAAGTTGGGAGGGTGGAAGCTATT TGCATGATGAAGGGGATGATTTTGATGATCTGCATGATGGGAGTGATGTGGATGAGGATGAGGATGGCGATGAAGATGAT GGCGATGAGGAGGGATATGAGACTGAAGATGCATTTGATGTCCATGCTCATGCTGGCGCTGGAGAACATCCAATCATTGA ATTTGACCCAGATGTGTTTTCAAGTGATGAAGCCTATGCAAGAGCATTACAAGAGGCTGAAGAGAGGGAAATGGCTGCTA GGCTGTTAGCTCTTGCTGGGATACATGATGTGGAGCCTGAGGACATGGAGGAGCATGGTGGTAATTCACAGGATGCTTGG GAGGATGTTGATCCAGACGAACTTTCCTACGAGGAACTACTAGCATTGGGTGAAGTAGTTGGAACTGAAAGCAGAGGTCT TACAACAGATACTATTGCCTCTTTGCCTTCAATCAAGTACAAGACTGGGAATGATCAACATGGAAGCAATGATTCGTGTG TTATTTGTCGGGTGGACTATGAGGATGACGAGTCCTTGACAGTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATT AACAATTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACTGAGGTATCTGCTTCTGGGAGCAACTTATAG
Protein sequence (LotjaGi5g1v0352300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENDNTAAADNNTATAAVTVTAKTGSGEVVKSTNHNHEEEHSNSNGEEHMTEKLEEEENREEGEEEEEGEGGEQPTGSAP NPRQPSRTPFSNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDEGDDFDDLHDGSDVDEDEDGDEDD GDEEGYETEDAFDVHAHAGAGEHPIIEFDPDVFSSDEAYARALQEAEEREMAARLLALAGIHDVEPEDMEEHGGNSQDAW EDVDPDELSYEELLALGEVVGTESRGLTTDTIASLPSIKYKTGNDQHGSNDSCVICRVDYEDDESLTVLSCKHLYHPECI NNWLKINKVCPVCSTEVSASGSNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| MobiDBLite | 1 | 96 | 96 | - | – | |
| MobiDBLite | 32 | 56 | 25 | - | – | |
| PANTHER | 36 | 342 | 307 | 3.1E-136 | ||
| PANTHER | 36 | 342 | 307 | 3.1E-136 | – | |
| Coils | 47 | 67 | 21 | - | – | |
| MobiDBLite | 57 | 72 | 16 | - | – | |
| MobiDBLite | 77 | 95 | 19 | - | – | |
| MobiDBLite | 123 | 166 | 44 | - | – | |
| MobiDBLite | 142 | 166 | 25 | - | – | |
| Gene3D | 258 | 340 | 83 | 1.2E-20 | ||
| SUPERFAMILY | 284 | 338 | 55 | 1.13E-18 | – | |
| Pfam | 291 | 333 | 43 | 3.1E-11 | ||
| CDD | 293 | 333 | 41 | 4.42781E-17 | – | |
| SMART | 293 | 333 | 41 | 7.5E-5 | ||
| ProSiteProfiles | 293 | 334 | 42 | 11.707 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0352300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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