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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0353600 |
| Transcript ID | LotjaGi5g1v0353600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GRAM domain protein/ABA-responsive-like protein; TAIR: AT5G08350.1 GRAM domain-containing protein / ABA-responsive protein-like protein; Swiss-Prot: sp|Q9FTA0|GEML4_ARATH GEM-like protein 4; TrEMBL-Plants: tr|B7FJD2|B7FJD2_MEDTR GRAM domain protein/ABA-responsive-like protein; Found in the gene: LotjaGi5g1v0353600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66921036..66922441) extracted from Lotus japonicus Gifu genome v1.2.
GAGTCACCTTGTCTCCTTTTAACCCATATATATAACCCTTCAGAATGCAAGGACTCATCAACCAAAATAACAAGAGCTCT TGAATACTTTTCACAGGCTAGTCATTGCACACTAAGATCCTCCAAGGTTCCAAGTCCAGAGATAGAAGGAAAAACTCCTA AAAGATAAGAATATGAAGACCTCATTTCTTCATGAGCTACTTAATGGAATTTCTATCAACTCAACAAAGAGATACTTGCC TGATTCTTCTGGCAGATACAGCAAGTCTATCACAAAATCAAAGCAGGGTAGGACACCCTAACATTGAATAACTTGATTTG ATAAATACTTCCTAGAAATTTATAAATACTAATCATGGCCATTTTTATCTTTTCAGGTAAATCAAGTTCAGTTCTGACTA GGATGAATATATTTGGGAGAAAGGCTGACAGTTTTGCACATGGAGTCAGAGAGCATGGTATGTAATCTTCAAAGCCTGAA ATTCAATTTTTCACTTTTGCATAGTTGCAAGACATGAGGCAAACACTCTATGCCATGGTACTTTATGAAAATGCAAACAT TTCTGTCAGACTCAAATATGTATGATGCATAATTTGCTATGATTTGAAAATAGAATGAAGCTGTAACTGATGGCTTGAAA CTGTTATTGCAAATGCAGTGAGACTGGGGCCAAAGATAAGTGATACAGTAAAAGGGAAATTAAGCTTGGGAGCCAGAATT CTTCAGGTTGGTGGAGTAGAGAAAGTGTTTAAGCAACTTTTTAGTATTAAAGATGGGGAGAAGCTGTTGAAAGCATCACA GTGCTACTTATCAACCACATCTGGTCCTATAGCTGGCCTCCTCTTCATTTCCACTCATAAAGTTTCTTTTTGCAGTGAGA GATCCATCAAGGTCTCTTCCCCAAAAGGAGAAGTGATAAGAGTCCATTATAAGGTTTCAATTCCACTTGAAAAGATAAAG TGCGTCAACCAAAGTCAAAATGTGAAGAAGCCTTCAGAAAAATACATAGAATTAGTTACCGAAGATGGTTTTGATTTCTG GTTAATGGGGTTCTTCAATTATCAGAAATCCTTAAGATGTCTTCAGCAGGCTATATGTCAATCAAGCTCAGAGTGAAAAA CTGTAGAATTCAAATTGTCAATCCCCTTTGCTTCCTCAACTATTTGTTGAGGTTGCAAAGGTTCCAAAACATGTACAAAT ATTTTACATTCTATTTTGTGTTCTTTTGCATTCATGGGAAACCTCATTGTACAGTTGACATACATCTTTTAAGATATATT TATTACAACTCAGTGAAAGTGGCTTTCCAATTTCATTTTTAAGCATATAACTATTGCCAGATGACTCAGATGAAACTTGT AAATCTTGGGTTTTCTTTTATACTATAAATATGGTTTACATGTGGG
CDS sequence (LotjaGi5g1v0353600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGACCTCATTTCTTCATGAGCTACTTAATGGAATTTCTATCAACTCAACAAAGAGATACTTGCCTGATTCTTCTGG CAGATACAGCAAGTCTATCACAAAATCAAAGCAGGGTAAATCAAGTTCAGTTCTGACTAGGATGAATATATTTGGGAGAA AGGCTGACAGTTTTGCACATGGAGTCAGAGAGCATGTGAGACTGGGGCCAAAGATAAGTGATACAGTAAAAGGGAAATTA AGCTTGGGAGCCAGAATTCTTCAGGTTGGTGGAGTAGAGAAAGTGTTTAAGCAACTTTTTAGTATTAAAGATGGGGAGAA GCTGTTGAAAGCATCACAGTGCTACTTATCAACCACATCTGGTCCTATAGCTGGCCTCCTCTTCATTTCCACTCATAAAG TTTCTTTTTGCAGTGAGAGATCCATCAAGGTCTCTTCCCCAAAAGGAGAAGTGATAAGAGTCCATTATAAGGTTTCAATT CCACTTGAAAAGATAAAGTGCGTCAACCAAAGTCAAAATGTGAAGAAGCCTTCAGAAAAATACATAGAATTAGTTACCGA AGATGGTTTTGATTTCTGGTTAATGGGGTTCTTCAATTATCAGAAATCCTTAAGATGTCTTCAGCAGGCTATATGTCAAT CAAGCTCAGAGTGA
Protein sequence (LotjaGi5g1v0353600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTSFLHELLNGISINSTKRYLPDSSGRYSKSITKSKQGKSSSVLTRMNIFGRKADSFAHGVREHVRLGPKISDTVKGKL SLGARILQVGGVEKVFKQLFSIKDGEKLLKASQCYLSTTSGPIAGLLFISTHKVSFCSERSIKVSSPKGEVIRVHYKVSI PLEKIKCVNQSQNVKKPSEKYIELVTEDGFDFWLMGFFNYQKSLRCLQQAICQSSSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 215 | 209 | 4.5E-103 | – | |
| PANTHER | 7 | 215 | 209 | 4.5E-103 | ||
| Gene3D | 91 | 212 | 122 | 8.6E-6 | ||
| Pfam | 94 | 209 | 116 | 7.1E-14 | ||
| SMART | 94 | 172 | 79 | 1.9E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0353600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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