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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0356000 |
| Transcript ID | LotjaGi5g1v0356000.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-related protein Rab-8A; TAIR: AT5G59840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|Q40215|Q40215_LOTJA RAB8A; Found in the gene: LotjaGi5g1v0356000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67111328..67114469) extracted from Lotus japonicus Gifu genome v1.2.
CGACGACGTCAGCCATCTTCTAGCAACCAATCACTGCGGCGGAGTGGCAGATCAGCGACGATGGCAGGAGCACCAGCAGC AAGAGCTCGTGCCGATTACGATTACCTCATCAAGCTTCTTCTTATTGGCGATAGTGGTCAGTTTTTTCATCTCTTTCTCT TTTTTTCCCCTTTTGTTTTGTTTTGCCCCCTTTTCATTTTGATTATCAAGTTAGATCCTTTGAGGGATTCTCCTTGTTTT TTTCTTTGTTTGAAATTCTGGGTATATCTTTCTTCTTAGATTTCATTCAATAATCTCTGACTTCACTTGGTTTTATGCTG TGTTTGTCTGTTTGATTAAACTAAACAACTTAATTAAGTGTGATGACTTATTCATAAGCTAATTTTTGTGATATCTTCAA TCTTCAGACTTGGTTTTAATGCAGTTTCATTCCTAACTGTGATGTTGCCTTTGTTGTTTATGGGGACTGCTTAATTGCTG GAGTATATGCATATACATATATAGGACTATTATTTCTAGTTTGGCTTTTTGTTGTCATGGTTGAAAATGGCTCAAAAGGT TTGGTACACATCCAAGTGGAGTGTGTGTTTATACCTAAATGAACATGAGAGAAAGGAACATAAGAGAGAAAAACGATAAA TGTGATATATGATGCGATGTGATAGACTGAGAGAAAAATAGGCTGTTTCTTTTGGTGTGTTTAAAATTTGGGAGTTTTTT TTTTGTAATTTTATAGTGCTTTGTCTGAATCTGAATTGTTTATGATGTAGGTGTGGGGAAGAGTTGTCTGCTTTTGAGAT TTTCTGATGGTTCCTTCACAACCAGCTTTATCACCACTATTGGGTTAGTATCTTTATGTTCCTTGTGAAGATGCTGTTGC AGTTATTATGGTCTTGTGTTATTCTTCTAACTTGGTAATTTGCTTTCTGAATGGAATTTTTCAAACTGAAAAGGGAGTAC CATGTTACTTTTCTTAAAACATTGTGTCTGCAATTCCAAACCAAATTTTGTTAGCGAAAACCACAACTATACGCAACTAG TTTGATAAATCTCATTCTTTAATGCCTCCACAACTTATTTTTTCAACTGAAACCATAAAACAAACTAGCAACTAATGTTC TAGCTCATTTGGATTAGCACCGCCAAGTAAATTTCGTCTTTAGTATAGACATTTTCTCATTGTTGGGGGGGGGGGGTACC AGATTGTCTGTATGCTATTGCTTAGTCTCTATGTGCGTATGTGAGTGAGCATTTGTCCAAAACCAGAACTTGTCTTTTTG TGATGAAAGTAAAATCTTACTATTAATCATGTATTGCAGAATTGATTTCAAGATAAGAACCATTGAACTTGATGGCAAGC GCATTAAGTTACAAATCTGGGACACTGCTGGTCAGGAGCGATTTCGAACTATTACGACCGGTATGTGTTTTATCTTGAGC AAACTTGCTCACAAATTCAAAATTTGCAGCTGTCCAAATTTTTTTTTTGGAAGGCTGCAGCTGTCCACTTGGTCTCATAT ACTGGGAAATGGGTGATTAATAGGCTTATATGATCATATGTTCACATGCATTCCTGTAGAAGTTAATTGAAGTGTGCTTG TGATTTATTTATGTTGTGCCTTGAAATGAAATTAGCTTTTATAAGCATTGGAAGTAAATTAAATTTTGAGAAATAATTTC ATATATAATAATTCTTTTGGACGGAAGTTGCAATTTTGAAGGAATGATGATTTAAATCTTTCAGTATCGTAACTCATATG TATCTAACATACACAAGGGCCAGTTTTATACTTTTATAGAGAGGGGCACATTACTTTAGTCTAACAGGTTCAGCTCTTAC TGACTTTAATTTTAAATACTATGAATAAATATCCCACTTTTGTTTCATGCTCCATTTGTTTGATGAAGGAAAACTTATCT TACAATGTTGCATTCTGTTTCAGCCTATTACCGTGGAGCCATGGGTATCTTGCTGGTTTATGATGTTACTGATGAAGCAT CATTCAACAGTACTCTCCTTTCCCTGATCTTGTTGGCAGTTTAAAGATATCTCAATGAGTGACATTCTTTCGGTGTTTTG ATGTATTTATGCACTAATGTCTGAGGGTTGTAGGTTTGTTTCAGCTTTGGCTGGCCTAGAAAATTGTATTTACTTCTTAT TTTCCCCATTTCTTATTGTTCCCTTTGATTCTATAACTCTCTAATATACTTGAATTAGGCAGATAAAATGATATATCTTT GAATGGTTAAATTTCCTTCGTTTATTCTGCCTTCCTGCCTTTTGATTTTCAATGTAGCTTGCTTCTTTCTGTTCAGATAT TAAGAATTGGATTCGCAATATTGAACAGCATGCTTCTGACAATGTAAACAAGATACTTGTGGGAAACAAGGCTGATATGG ATGAAAGTAAGAGGGTAGGTGCCTCTCATGGTCCTTTTCTATTTAATTTTATAATTACATCTCTGTTGGCCGGGCTTTGA GATTAGTTGAAACTTGATTGAGTCAATGTTGCATGATTGAGTCCATGCTCATGCCATATTTGTTTACTGATATGAGATCA AGCAATCTCTTTGCATGGTTTCTGCTATCGTTGTGTTGCTATTCTCCATTCATACAAACTAAAGGGGTTCCTTTTTTAGG CTGTACCTACTTCCAAAGGCCAAGCTCTTGCAGATGAGTATGGTATCAAGTTCTTTGAGACTGTGAGTAGCAATATGCTT GACAATAAGTTTCATTAATTTATATGTGATTTATTTTATATTCATATTAATTAAAGAACACATGCAGAGTGCAAAAACAA ACTTGAATGTGGAGGAGGTTTTCTTTTCAATAGCAAGAGACATCAAGCAGAGGCTTGCAGACACAGATTCTAGAGCTGAG GTATTTTCTTTACTCTTTATTGTCTGTACTTCTTTTTCCTGTGAAATGAGTGTATGCATGAATTGAGCCTTCTCTCTCTC TCTCTCTCTCTCTATCCCCCCCCCCCCCATTTTTCCCTGAAAGAGTAAAATGTAAAATTTCACTATCTTGTATCAAGTAC TTTTAAAAAATAAACTTATTGAGGAAATATTTGGGATTTTCTTAGCTCTGACTTGCAAAATAAGTGCATAGATTTGTTGC TTCTTTCTGACTGCTTGGTTAA
CDS sequence (LotjaGi5g1v0356000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGGAGCACCAGCAGCAAGAGCTCGTGCCGATTACGATTACCTCATCAAGCTTCTTCTTATTGGCGATAGTGGTGT GGGGAAGAGTTGTCTGCTTTTGAGATTTTCTGATGGTTCCTTCACAACCAGCTTTATCACCACTATTGGAATTGATTTCA AGATAAGAACCATTGAACTTGATGGCAAGCGCATTAAGTTACAAATCTGGGACACTGCTGGTCAGGAGCGATTTCGAACT ATTACGACCGCCTATTACCGTGGAGCCATGGGTATCTTGCTGGTTTATGATGTTACTGATGAAGCATCATTCAACAATAT TAAGAATTGGATTCGCAATATTGAACAGCATGCTTCTGACAATGTAAACAAGATACTTGTGGGAAACAAGGCTGATATGG ATGAAAGTAAGAGGGCTGTACCTACTTCCAAAGGCCAAGCTCTTGCAGATGAGTATGGTATCAAGTTCTTTGAGACTAGT GCAAAAACAAACTTGAATGTGGAGGAGGTTTTCTTTTCAATAGCAAGAGACATCAAGCAGAGGCTTGCAGACACAGATTC TAGAGCTGAGGAAATATTTGGGATTTTCTTAGCTCTGACTTGCAAAATAAGTGCATAG
Protein sequence (LotjaGi5g1v0356000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGAPAARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT ITTAYYRGAMGILLVYDVTDEASFNNIKNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETS AKTNLNVEEVFFSIARDIKQRLADTDSRAEEIFGIFLALTCKISA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 2 | 182 | 181 | 0.0041 | – | |
| PANTHER | 7 | 193 | 187 | 1.0E-124 | – | |
| PANTHER | 7 | 193 | 187 | 1.0E-124 | – | |
| Gene3D | 10 | 192 | 183 | 1.0E-71 | – | |
| ProSiteProfiles | 12 | 205 | 194 | 37.689 | – | |
| SUPERFAMILY | 12 | 182 | 171 | 9.3E-64 | ||
| CDD | 14 | 181 | 168 | 4.0917E-119 | – | |
| TIGRFAM | 15 | 171 | 157 | 5.6E-32 | ||
| SMART | 17 | 181 | 165 | 5.4E-107 | – | |
| PRINTS | 17 | 38 | 22 | 6.5E-47 | – | |
| Pfam | 18 | 179 | 162 | 1.4E-66 | ||
| SMART | 18 | 181 | 164 | 2.8E-35 | – | |
| SMART | 19 | 181 | 163 | 3.9E-14 | – | |
| SMART | 22 | 205 | 184 | 1.5E-5 | – | |
| PRINTS | 40 | 56 | 17 | 6.5E-47 | – | |
| PRINTS | 58 | 80 | 23 | 6.5E-47 | – | |
| PRINTS | 120 | 133 | 14 | 6.5E-47 | – | |
| PRINTS | 156 | 178 | 23 | 6.5E-47 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi5g1v0356000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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