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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0356000 |
Transcript ID | LotjaGi5g1v0356000.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ras-related protein Rab-8A; TAIR: AT3G46060.1 RAB GTPase homolog 8A; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|I1LK55|I1LK55_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0356000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67111388..67114438) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGGAGCACCAGCAGCAAGAGCTCGTGCCGATTACGATTACCTCATCAAGCTTCTTCTTATTGGCGATAGTGGTCA GTTTTTTCATCTCTTTCTCTTTTTTTCCCCTTTTGTTTTGTTTTGCCCCCTTTTCATTTTGATTATCAAGTTAGATCCTT TGAGGGATTCTCCTTGTTTTTTTCTTTGTTTGAAATTCTGGGTATATCTTTCTTCTTAGATTTCATTCAATAATCTCTGA CTTCACTTGGTTTTATGCTGTGTTTGTCTGTTTGATTAAACTAAACAACTTAATTAAGTGTGATGACTTATTCATAAGCT AATTTTTGTGATATCTTCAATCTTCAGACTTGGTTTTAATGCAGTTTCATTCCTAACTGTGATGTTGCCTTTGTTGTTTA TGGGGACTGCTTAATTGCTGGAGTATATGCATATACATATATAGGACTATTATTTCTAGTTTGGCTTTTTGTTGTCATGG TTGAAAATGGCTCAAAAGGTTTGGTACACATCCAAGTGGAGTGTGTGTTTATACCTAAATGAACATGAGAGAAAGGAACA TAAGAGAGAAAAACGATAAATGTGATATATGATGCGATGTGATAGACTGAGAGAAAAATAGGCTGTTTCTTTTGGTGTGT TTAAAATTTGGGAGTTTTTTTTTTGTAATTTTATAGTGCTTTGTCTGAATCTGAATTGTTTATGATGTAGGTGTGGGGAA GAGTTGTCTGCTTTTGAGATTTTCTGATGGTTCCTTCACAACCAGCTTTATCACCACTATTGGGTTAGTATCTTTATGTT CCTTGTGAAGATGCTGTTGCAGTTATTATGGTCTTGTGTTATTCTTCTAACTTGGTAATTTGCTTTCTGAATGGAATTTT TCAAACTGAAAAGGGAGTACCATGTTACTTTTCTTAAAACATTGTGTCTGCAATTCCAAACCAAATTTTGTTAGCGAAAA CCACAACTATACGCAACTAGTTTGATAAATCTCATTCTTTAATGCCTCCACAACTTATTTTTTCAACTGAAACCATAAAA CAAACTAGCAACTAATGTTCTAGCTCATTTGGATTAGCACCGCCAAGTAAATTTCGTCTTTAGTATAGACATTTTCTCAT TGTTGGGGGGGGGGGGTACCAGATTGTCTGTATGCTATTGCTTAGTCTCTATGTGCGTATGTGAGTGAGCATTTGTCCAA AACCAGAACTTGTCTTTTTGTGATGAAAGTAAAATCTTACTATTAATCATGTATTGCAGAATTGATTTCAAGATAAGAAC CATTGAACTTGATGGCAAGCGCATTAAGTTACAAATCTGGGACACTGCTGGTCAGGAGCGATTTCGAACTATTACGACCG GTATGTGTTTTATCTTGAGCAAACTTGCTCACAAATTCAAAATTTGCAGCTGTCCAAATTTTTTTTTTGGAAGGCTGCAG CTGTCCACTTGGTCTCATATACTGGGAAATGGGTGATTAATAGGCTTATATGATCATATGTTCACATGCATTCCTGTAGA AGTTAATTGAAGTGTGCTTGTGATTTATTTATGTTGTGCCTTGAAATGAAATTAGCTTTTATAAGCATTGGAAGTAAATT AAATTTTGAGAAATAATTTCATATATAATAATTCTTTTGGACGGAAGTTGCAATTTTGAAGGAATGATGATTTAAATCTT TCAGTATCGTAACTCATATGTATCTAACATACACAAGGGCCAGTTTTATACTTTTATAGAGAGGGGCACATTACTTTAGT CTAACAGGTTCAGCTCTTACTGACTTTAATTTTAAATACTATGAATAAATATCCCACTTTTGTTTCATGCTCCATTTGTT TGATGAAGGAAAACTTATCTTACAATGTTGCATTCTGTTTCAGCCTATTACCGTGGAGCCATGGGTATCTTGCTGGTTTA TGATGTTACTGATGAAGCATCATTCAACAGTACTCTCCTTTCCCTGATCTTGTTGGCAGTTTAAAGATATCTCAATGAGT GACATTCTTTCGGTGTTTTGATGTATTTATGCACTAATGTCTGAGGGTTGTAGGTTTGTTTCAGCTTTGGCTGGCCTAGA AAATTGTATTTACTTCTTATTTTCCCCATTTCTTATTGTTCCCTTTGATTCTATAACTCTCTAATATACTTGAATTAGGC AGATAAAATGATATATCTTTGAATGGTTAAATTTCCTTCGTTTATTCTGCCTTCCTGCCTTTTGATTTTCAATGTAGCTT GCTTCTTTCTGTTCAGATATTAAGAATTGGATTCGCAATATTGAACAGCATGCTTCTGACAATGTAAACAAGATACTTGT GGGAAACAAGGCTGATATGGATGAAAGTAAGAGGGTAGGTGCCTCTCATGGTCCTTTTCTATTTAATTTTATAATTACAT CTCTGTTGGCCGGGCTTTGAGATTAGTTGAAACTTGATTGAGTCAATGTTGCATGATTGAGTCCATGCTCATGCCATATT TGTTTACTGATATGAGATCAAGCAATCTCTTTGCATGGTTTCTGCTATCGTTGTGTTGCTATTCTCCATTCATACAAACT AAAGGGGTTCCTTTTTTAGGCTGTACCTACTTCCAAAGGCCAAGCTCTTGCAGATGAGTATGGTATCAAGTTCTTTGAGA CTGTGAGTAGCAATATGCTTGACAATAAGTTTCATTAATTTATATGTGATTTATTTTATATTCATATTAATTAAAGAACA CATGCAGAGTGCAAAAACAAACTTGAATGTGGAGGAGGTTTTCTTTTCAATAGCAAGAGACATCAAGCAGAGGCTTGCAG ACACAGATTCTAGAGCTGAGGTATTTTCTTTACTCTTTATTGTCTGTACTTCTTTTTCCTGTGAAATGAGTGTATGCATG AATTGAGCCTTCTCTCTCTCTCTCTCTCTCTCTATCCCCCCCCCCCCCATTTTTCCCTGAAAGAGTAAAATGTAAAATTT CACTATCTTGTATCAAGTACTTTTAAAAAATAAACTTATTGAGGAAATATTTGGGATTTTCTTAGCTCTGACTTGCAAAA TAAGTGCATAG
CDS sequence (LotjaGi5g1v0356000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGGAGCACCAGCAGCAAGAGCTCGTGCCGATTACGATTACCTCATCAAGCTTCTTCTTATTGGCGATAGTGGTGT GGGGAAGAGTTGTCTGCTTTTGAGATTTTCTGATGGTTCCTTCACAACCAGCTTTATCACCACTATTGGAATTGATTTCA AGATAAGAACCATTGAACTTGATGGCAAGCGCATTAAGTTACAAATCTGGGACACTGCTGGTCAGGAGCGATTTCGAACT ATTACGACCGCCTATTACCGTGGAGCCATGGGTATCTTGCTGGTTTATGATGTTACTGATGAAGCATCATTCAACAATAT TAAGAATTGGATTCGCAATATTGAACAGCATGCTTCTGACAATGTAAACAAGATACTTGTGGGAAACAAGGCTGATATGG ATGAAAGTAAGAGGGCTGTACCTACTTCCAAAGGCCAAGCTCTTGCAGATGAGTATGGTATCAAGTTCTTTGAGACTAGT GCAAAAACAAACTTGAATGTGGAGGAGGTTTTCTTTTCAATAGCAAGAGACATCAAGCAGAGGCTTGCAGACACAGATTC TAGAGCTGAGTATCAAGTACTTTTAAAAAATAAACTTATTGAGGAAATATTTGGGATTTTCTTAGCTCTGACTTGCAAAA TAAGTGCATAG
Protein sequence (LotjaGi5g1v0356000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGAPAARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT ITTAYYRGAMGILLVYDVTDEASFNNIKNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETS AKTNLNVEEVFFSIARDIKQRLADTDSRAEYQVLLKNKLIEEIFGIFLALTCKISA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SMART | 2 | 182 | 181 | 0.0041 | – | |
PANTHER | 7 | 199 | 193 | 5.8E-125 | – | |
PANTHER | 7 | 199 | 193 | 5.8E-125 | – | |
Gene3D | 10 | 201 | 192 | 9.6E-72 | – | |
SUPERFAMILY | 12 | 185 | 174 | 7.87E-64 | ||
ProSiteProfiles | 12 | 212 | 201 | 37.768 | – | |
CDD | 14 | 181 | 168 | 5.86849E-119 | – | |
TIGRFAM | 15 | 171 | 157 | 7.4E-32 | ||
PRINTS | 17 | 38 | 22 | 7.9E-47 | – | |
SMART | 17 | 181 | 165 | 5.4E-107 | – | |
Pfam | 18 | 179 | 162 | 1.7E-66 | ||
SMART | 18 | 181 | 164 | 2.8E-35 | – | |
SMART | 19 | 181 | 163 | 3.9E-14 | – | |
SMART | 22 | 216 | 195 | 1.1E-6 | – | |
PRINTS | 40 | 56 | 17 | 7.9E-47 | – | |
PRINTS | 58 | 80 | 23 | 7.9E-47 | – | |
PRINTS | 120 | 133 | 14 | 7.9E-47 | – | |
PRINTS | 156 | 178 | 23 | 7.9E-47 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi5g1v0356000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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