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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0357000 |
| Transcript ID | LotjaGi5g1v0357000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin; TAIR: AT4G01470.1 tonoplast intrinsic protein 1;3; Swiss-Prot: sp|O82598|TIP13_ARATH Aquaporin TIP1-3; TrEMBL-Plants: tr|A0A151U848|A0A151U848_CAJCA Aquaporin TIP1-3; Found in the gene: LotjaGi5g1v0357000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67162725..67164838) extracted from Lotus japonicus Gifu genome v1.2.
TACCAGGTCACAAACTCAGGCTGCATGCTTGCATAGTCTTACTGGGATACATTTGGACCGTTTCTTTAGCCGTTAATTCT GTTATTTAAAGAGCAAACAAAGCTTTCACAGTTTATGTTCATCACTCTTAACTGAAACAGAATAGAAAGAAGTTTAAAAA GCACACAGGCTTCTGTCTCTGTAGATTCTGATTATTCCTTAATTAATATTAAAATGGCAATTTATAGAATTGCAATTGGA TCTCCTAGAGAGGCTAGCCACCCTGCTGCAATTAGAGCAGCATTTGCAGAATTCTTTTCTATGGCCATTTTTGTTTTTGC TGGCCAAGGCTCTGGCATGGCTTACAGTGAGCACCCTACATGATCATGTGTACTATGTTTTAGAATCGACTCGCTTGATT ACTGTTTTTAAATTCAGATAACTGATAAAAAAGATCAAACAAGTCCTATTTTTGTTGCACTGCAAGATAAATTTGTAGCT AGAGAAATTTGGAATTTTGTTTTAGGATGCAAATGCAATCATGGTGACTAATTGTTGGCTATTTGTGTTGTGGCAGACAA ACTTACCAACAATGGACCTGCGACCCCTGCTGGTCTCATAGTTGCATCATTATCTCATGCATTCGCGCTTTTTGTGGCGG TTTCTGTTGGGGCAAACATGTCTGGTGGTCATGTGAATCCTGCAGTCACATTTGGTGCTTTCGTAGGAGGAAACATAACC TTGTTGAGAAGCATTTTATATTGGATTGCACAATTGCTTGGTTCTGTAGTTGCTTGCATTCTTCTCAATTTCTCCACAGG TGGAATGGTAACTAATCATCCATTCTTCAACTTTAAACATTCATTATTGAATGCAATCATCTGAACTCATCTGAATTAGG ATCCTCTCATATGGACACTTCACATGATATTTTCATGTTAAAATCGTGTCTAGTACTCTCTTCTTATCCATCAAATAAGT GAATTTTTTTGAATATTTATAAAAAGTTAAAAACAGATATAGACATAAAGTTTCACATGACATTATTTTGTGACATGAGA GAATTTTAATCCAAATTGATCCCGTAATTGATGGCTTGTTTGAAAAAGGTTATTTGAGCTTATCTTATAGTATAATGGCT TATGCAAGTATTTGGGACTTGGGAGAACTTGTGTAAATAGTTTATGGTCTACATATAAGCTATTTTGAATTTATTTTTGT AAGTTGTTCAAATTTGCTTATAAATAAGAGTTTATGTTAATCTATAACTTGTTTTAAGCTTATTTCAATAAATTTATCAA AATACCATAAGTGTTCAATAAAACTGTTTACCCGAGCGCACCTGAACCTATTTTGTTTGCATTATGCAGGAAATATCAGC TTTCTCTCTATCCTCTGGTGTATCTGTTTGGAATGCATTGCTTTTTGAGATTGTGATGACTTTTGGGTTGGTATATACAG TTTATGCCACAGCAGTGGACCCAAAGAAGGGGAATGTGGGTGTTGTGGCCCCAATAGCAATTGGTTTTGTTGTGGGTGCC AACATCTTGGTTGGTGGTGCTTTTGATGGTGCATCAATGAACCCAGCTGTATCCTTTGGGCCTGCTGTGGTTAGCTGGAC TTGGACTCATCACTGGGTCTATTGGGCCGGCCCATTCATTGGTTCAGCCACTGCTGCCATTCTCTATGATAATATCTTTA TTGGTGATGATGGTCATGAACCTCTTTCAAATAGTGACTTTTAAAGTCTTCTTTTTTTGAAAAAGAAATATTTATTGCAT AACAACAGAACCATGAGACCATCCCCTCATCCTCATGGATAGGCATACATGATTGGTCCCAAGACCCCATTGCATAATGG GAACAAAACAGAAAAACAAAAAAAGGTAAAAATGAATGAATCCTTTGAAGTCTTATTTAAAGTCTATTTTTTTCTTACTT TTATGGATTTAGTCTAGACCTCTTCTAATTGATGAGTGAATAAATGAATGAATCCTTTAACCTGCAACATCATTTACTGA TCAATTACTTATTTCTTTTAATTTTGTTTTTTAATCCCTTTATCAATAGATGACAGAGAAAATCACCAAGAAAATAACAA AAAGAATATTACCTCAGGCAAAATTTTATGGTCA
CDS sequence (LotjaGi5g1v0357000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATTTATAGAATTGCAATTGGATCTCCTAGAGAGGCTAGCCACCCTGCTGCAATTAGAGCAGCATTTGCAGAATT CTTTTCTATGGCCATTTTTGTTTTTGCTGGCCAAGGCTCTGGCATGGCTTACAACAAACTTACCAACAATGGACCTGCGA CCCCTGCTGGTCTCATAGTTGCATCATTATCTCATGCATTCGCGCTTTTTGTGGCGGTTTCTGTTGGGGCAAACATGTCT GGTGGTCATGTGAATCCTGCAGTCACATTTGGTGCTTTCGTAGGAGGAAACATAACCTTGTTGAGAAGCATTTTATATTG GATTGCACAATTGCTTGGTTCTGTAGTTGCTTGCATTCTTCTCAATTTCTCCACAGGTGGAATGGAAATATCAGCTTTCT CTCTATCCTCTGGTGTATCTGTTTGGAATGCATTGCTTTTTGAGATTGTGATGACTTTTGGGTTGGTATATACAGTTTAT GCCACAGCAGTGGACCCAAAGAAGGGGAATGTGGGTGTTGTGGCCCCAATAGCAATTGGTTTTGTTGTGGGTGCCAACAT CTTGGTTGGTGGTGCTTTTGATGGTGCATCAATGAACCCAGCTGTATCCTTTGGGCCTGCTGTGGTTAGCTGGACTTGGA CTCATCACTGGGTCTATTGGGCCGGCCCATTCATTGGTTCAGCCACTGCTGCCATTCTCTATGATAATATCTTTATTGGT GATGATGGTCATGAACCTCTTTCAAATAGTGACTTTTAA
Protein sequence (LotjaGi5g1v0357000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIYRIAIGSPREASHPAAIRAAFAEFFSMAIFVFAGQGSGMAYNKLTNNGPATPAGLIVASLSHAFALFVAVSVGANMS GGHVNPAVTFGAFVGGNITLLRSILYWIAQLLGSVVACILLNFSTGGMEISAFSLSSGVSVWNALLFEIVMTFGLVYTVY ATAVDPKKGNVGVVAPIAIGFVVGANILVGGAFDGASMNPAVSFGPAVVSWTWTHHWVYWAGPFIGSATAAILYDNIFIG DDGHEPLSNSDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 252 | 252 | 8.6E-152 | – | |
| PANTHER | 1 | 252 | 252 | 8.6E-152 | ||
| Phobius | 1 | 17 | 17 | - | – | |
| Gene3D | 4 | 252 | 249 | 9.3E-84 | ||
| SUPERFAMILY | 13 | 240 | 228 | 8.24E-66 | ||
| Pfam | 14 | 234 | 221 | 1.7E-68 | ||
| Phobius | 18 | 36 | 19 | - | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| PRINTS | 21 | 40 | 20 | 3.1E-47 | ||
| CDD | 21 | 237 | 217 | 1.48098E-62 | ||
| Phobius | 37 | 55 | 19 | - | – | |
| TMHMM | 52 | 74 | 23 | - | – | |
| Phobius | 56 | 77 | 22 | - | – | |
| PRINTS | 65 | 89 | 25 | 3.1E-47 | ||
| Phobius | 78 | 103 | 26 | - | – | |
| TMHMM | 81 | 100 | 20 | - | – | |
| ProSitePatterns | 83 | 91 | 9 | - | ||
| PRINTS | 102 | 121 | 20 | 3.1E-47 | ||
| TMHMM | 104 | 126 | 23 | - | – | |
| Phobius | 104 | 124 | 21 | - | – | |
| Phobius | 125 | 143 | 19 | - | – | |
| TMHMM | 139 | 161 | 23 | - | – | |
| Phobius | 144 | 164 | 21 | - | – | |
| PRINTS | 147 | 165 | 19 | 3.1E-47 | ||
| Phobius | 165 | 170 | 6 | - | – | |
| Phobius | 171 | 193 | 23 | - | – | |
| TMHMM | 171 | 193 | 23 | - | – | |
| PRINTS | 180 | 202 | 23 | 3.1E-47 | ||
| Phobius | 194 | 216 | 23 | - | – | |
| PRINTS | 217 | 237 | 21 | 3.1E-47 | ||
| TMHMM | 217 | 239 | 23 | - | – | |
| Phobius | 217 | 234 | 18 | - | – | |
| Phobius | 235 | 252 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi5g1v0357000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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