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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0358500 |
| Transcript ID | LotjaGi5g1v0358500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT3G55140.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9C8G4|PLY4_ARATH Probable pectate lyase 4; TrEMBL-Plants: tr|I3T7N6|I3T7N6_LOTJA Pectate lyase; Found in the gene: LotjaGi5g1v0358500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67308548..67311508) extracted from Lotus japonicus Gifu genome v1.2.
TTTATCTTTTAAAGTAAAAAATTTCTTTAGACAAGAAAAAAGGTATCTCATAAAGATTATCCCATTATCCCATGATACAT AATATACTAAAAATAAATCATTTTAATTCGGTTTATTTTTTTCAACAAGGTTGAGTCTGAAGCTGAAGCAGAGGTGAATA TCATGGCGTCGATGCTGCCATACGGCGATGTAGATTCCACTTTGAGGGCCTTGGCCGGTCAAGCAGAGGGTTTCGGCCGC AACGCTATCGGTGGTCTCCATGGTCCTCTCTATTTGGTCACCACCCTTGCAGGCAGGATCATCCTGTTTTTTTTTTTTCC AATTCATGTGATGGGTTTTTGTTGAATTTGCTAAATTCATGATCTTTTTTGTGCATTTCATCAAAGGGGTGTAACACTTT ATCAATTTGTATGCATGATTTTCAATGAATGGGGATTTTGAAATTTAGATGCCCTTATTAGCCTATTTTCAGAATCAATT TGTGGGGGAAAAAGGTGCAGCTGCATATGCTGATTGATGCTTAGGCCTAATTTACCAATACATGCATGATTTCACCTTAG TAAAATCTTAGGTTTTGAATATTGTGAATGAAAAAAAAGTTTGTTGAGAGAGCTAACCTGACCAGAATGTGGATGTTTCC GGCTCGAATAAGTTGCCTCCTACATGGTGTGGAATGTGGATGTTTCCCACACGATAAATTGGCTCCTACATGTGTTAGAG AAAAAAATGCTTAGGCCTAATTTTTTGTTTAAAATCATTTGAAGCTGTACAACATGTAGAGTTTTTATGTCTTGAGCTTT TATATTGAATTTATGTTTGTGAATCATCTGTTGCCTGTTTGCTGATTTCAGATGATGGTCCTGGTTCCCTTCGTGAGGGA TGTCGAAGAAAGGATCCCCTGTGGATTGTTTTTCAAGTTTCGGGCACGATTCATCTTCAGTCATACTTGAGTGTGTCATC TTATAAGACTGTAGATGGCAGAGGCCAGAGGATAAAATTTACTGGGAAGGGATTAAGGCTGAAAGAATGTGAGCACATAA TTGTATGCAATCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTGGATGGCATTCAAATCAAACCTAATTCTAGGCACATA TGGATTGATCGATGCAGCCTTCGTGATTATGATGATGGGCTTATAGACATTACAAGACAGAGCACAGATATCACTATATC TAGGTGGGTTCTTTTTCTTCATTTTAAATTGAACTACTACATTAATGATTGATAGTGTGAGCTGTAATGTATTGTGATGA GTTACTTTGCTTGTGGCACCAGATGTCACTTTGCATCACATGACAAGACCATGCTAATTGGAGCTGATCCATCTCACGTT GGCGATCGATGCATCCGGGTGACCATTCATCATTGTTTCTTTGACGGAACCCGGCAAAGACACCCTCGTGTGAGATTTGG AAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGAATATATGCTGTTTGTGCTAGTGTTGAGTCCCAGGCAAGTG TGATGCTATCATCCTCAGCTTCTTGAATCTTTTCGCATTCAAAGTTATGTTCAAGAATTGTGGAGATAACTAAATTTTTT ACCATCATTTTACAGATATACTCTCAATGCAACATATATGAAGCTGGAACTAAGAAAAAGACTTTTGAGTTTTATACTGA AAAGGTAAAATACTTTGCTTCTCACTCCATGTTTGCCATTTTATCCATGGACAAAACCAGATTAATGGGTAAGGAGGGAA AATTTGTAACAGACTAAACTAAATCAACTATAGCTAATTTGAAGATACGGTATCAAGATTTGGACAGGGCAAATAAAACA TTTGAATACTATTCTATTATGCAAAAAAATTCTTTGATGGGGTGACTGTCCTATTTTTAAAGTACTTAGTTCTGTCCTGA GTTTTATCATCATTAATGAGGGCCATATCATATTCTCAATTTTACTTTATTTTTGCCCATTCTTAAAATCTAAACCCAAA TGTTACCCTGAAAAGGGCGTTAAACATCCAATATTTTGCATATCTCAGTTTTTGAGTCATGCATAGTTTTCTTAGTTATC CTGAAGTCCAGATATGTAAATACTTGGGTATACTTCTAGCAATTTCAATTTCATGATTTTATTTTGGCAGATGCATAGTT GTGTCAATTGGGTGTTATGAAACAGCCTCCTATATTATGTTAATGAATAATTAATTTTTACTCTAGTCCTGCCATATTGG TTAACACATGGATCTTCCAGAATCATTTATCTCTTCACAAAAGCTGCTCCCATTAGCTTCTTTTAAAAGTACTTCTCCTA CTAACGTTACATCCTACCCAGTTTTCAAACATACACTTAATACCCGTGACATTTGCTAATGGTTGTGATCAAAATGATTC GGTAGGCGGCAGATAAGGAAGAGCAGAAGACTGGCTTCTTAATATCTGAAGGAGACATGTTTCTGAATGGTGCTCAGCCA TGCTTACCTACAGAGTACAAAGAAGAATCCATGTTCCATCCTAGTGAGTATTACCCAACATGGACTATGGAAGCAGCTGA TAATTCTCTCAGAGATATCCTCCAGTTATGTACAGGTTGGCAGTCCATTTGTAGGCCAGAAGACCATACGACCATCTAAA TAAGGTTCATTGAATTGCAGGAGTACACCACCTTGCTTATGTGACTCCATTGACATTACTTCAAGCACATTTAAGAGGGG TCTGTAGTTCTGGTTAATCTGATAGTTCTTTTGATTTGAGTATAGTACTATGGTTTTAGGAACCTGTTCAACCGAACAAT CATCGAATCAGTAGATGTATGGTCTGTACCACCATAAAACCGGTTTACCAATTTTTTCATTATTTGTAATATTTTTTAGT CCAATAAAAGTCTAATACAAGTTACAAAGGTTCATGCACGAGATTCTCATATGATTCATAATTTATTTATTTATTTTTGA A
CDS sequence (LotjaGi5g1v0358500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCGATGCTGCCATACGGCGATGTAGATTCCACTTTGAGGGCCTTGGCCGGTCAAGCAGAGGGTTTCGGCCGCAA CGCTATCGGTGGTCTCCATGGTCCTCTCTATTTGGTCACCACCCTTGCAGATGATGGTCCTGGTTCCCTTCGTGAGGGAT GTCGAAGAAAGGATCCCCTGTGGATTGTTTTTCAAGTTTCGGGCACGATTCATCTTCAGTCATACTTGAGTGTGTCATCT TATAAGACTGTAGATGGCAGAGGCCAGAGGATAAAATTTACTGGGAAGGGATTAAGGCTGAAAGAATGTGAGCACATAAT TGTATGCAATCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTGGATGGCATTCAAATCAAACCTAATTCTAGGCACATAT GGATTGATCGATGCAGCCTTCGTGATTATGATGATGGGCTTATAGACATTACAAGACAGAGCACAGATATCACTATATCT AGATGTCACTTTGCATCACATGACAAGACCATGCTAATTGGAGCTGATCCATCTCACGTTGGCGATCGATGCATCCGGGT GACCATTCATCATTGTTTCTTTGACGGAACCCGGCAAAGACACCCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACA ATTACACCAGAAACTGGGGAATATATGCTGTTTGTGCTAGTGTTGAGTCCCAGATATACTCTCAATGCAACATATATGAA GCTGGAACTAAGAAAAAGACTTTTGAGTTTTATACTGAAAAGGCGGCAGATAAGGAAGAGCAGAAGACTGGCTTCTTAAT ATCTGAAGGAGACATGTTTCTGAATGGTGCTCAGCCATGCTTACCTACAGAGTACAAAGAAGAATCCATGTTCCATCCTA GTGAGTATTACCCAACATGGACTATGGAAGCAGCTGATAATTCTCTCAGAGATATCCTCCAGTTATGTACAGGTTGGCAG TCCATTTGTAGGCCAGAAGACCATACGACCATCTAA
Protein sequence (LotjaGi5g1v0358500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASMLPYGDVDSTLRALAGQAEGFGRNAIGGLHGPLYLVTTLADDGPGSLREGCRRKDPLWIVFQVSGTIHLQSYLSVSS YKTVDGRGQRIKFTGKGLRLKECEHIIVCNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITIS RCHFASHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYE AGTKKKTFEFYTEKAADKEEQKTGFLISEGDMFLNGAQPCLPTEYKEESMFHPSEYYPTWTMEAADNSLRDILQLCTGWQ SICRPEDHTTI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 325 | 323 | 1.2E-197 | – | |
| PANTHER | 3 | 325 | 323 | 1.2E-197 | – | |
| Gene3D | 8 | 310 | 303 | 1.9E-90 | ||
| SUPERFAMILY | 18 | 301 | 284 | 4.56E-82 | ||
| PRINTS | 20 | 37 | 18 | 1.6E-10 | ||
| SMART | 47 | 245 | 199 | 4.8E-32 | ||
| Pfam | 74 | 238 | 165 | 8.3E-26 | ||
| PRINTS | 200 | 219 | 20 | 1.6E-10 | ||
| PRINTS | 222 | 241 | 20 | 1.6E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0358500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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