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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0364200 |
| Transcript ID | LotjaGi5g1v0364200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Non-structural maintenance of chromosome element 4; TAIR: AT1G51130.1 Nse4, component of Smc5/6 DNA repair complex; Swiss-Prot: sp|Q9C689|NSE4A_ARATH Non-structural maintenance of chromosomes element 4 homolog A; TrEMBL-Plants: tr|A0A151U864|A0A151U864_CAJCA Non-SMC element 4 isogeny A; Found in the gene: LotjaGi5g1v0364200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67887961..67890624) extracted from Lotus japonicus Gifu genome v1.2.
CTGAATTCATGTGTTATTGGGCTGATGTTGGAATGCCTTACTGGAATGAAGGCAGTAGAATGAATAGAGTACAAGTAAAG TTGATTTGAGCAAGCGGGAAAGTGTCCCTCCATAATCATTCAACATTCATCAAATTTTCGAATTTCACACAAACATAACA TACATACAAGATAGATAGATATATACCACATTTTTTCATTCTTTCATTCCAGTCGCTGGTGTTAGGGTTTGTTCAAAGAA AGGGAAGGATGAGGCTCAGAGGCGACACCATCGACGGCGACGACGAACAAGCCCGAGCGCTCCCGGAAGAGGACGAGGAT GACCCCGAACACGACACCTCTTGTCGCAGGGTCATTCGCTCACAATTCCTCAAACTCAAGACTCTCATTAATGGTTGGTT GCTTCCTCCTATTCCCAATTTCAATTTCAATATTTTCTTCTTTCTCGTCCCTAACCCTAACCCTAACCCTAACCCTAACC CCTAATAATCTGTATCAGAGAAAAGGGATGACTTGATCAACACCGATTCCGACAAGTTCGAAACCATATTGGACCAATTT CACAAGCTGCACGAGCAAGGTTCGTAGTATTCTATTCACTATTCACTGTTCAATGTTGTTCATCCCTTCCAACATTTCCA TGTATGTTCCAGTTAAGAAGCCAAGAGAACAGGTTGCTGATGCTGAGGCTCTGCTTGATTTCACCCGCACACTCGTTGGA TCTGTCAAGTCTCTCGTCAATGAGGGTATCACCCCTTCTCACTTTGTTTCTTCTCTCCTCAAATACTATCACCAACCTTC ATTCAACTGGCAAAAACTTGGCCTTGCTGTTTCCCCCTTTTTCCCAACCGTCGTCAATGGCTCTTCTACCATGTATGTCT CTCACTTTGCTAATTACTACTTCCTTGCTTGCCAACCATTATTATATTCCTTTCATTCTTACGCTTCTTTCAACTTTCAA GGCTTGGTCCAATGGAAAATCAACTCAAGCAACGCAAAGTACCCGCCCGAGGGAAAAGAAATGCTGGCCCTACTACAACT GCTAGGCCTCAACAGGTAACTTGCATTTCCCTTTTCCTTATACTTTATTCTTTACTGCATACCATTTATATGCTTTAATT GCTGCATGTTATTCCCATTCAACAAAAGGTGTGTCATTGCTTTTGGCTTTGTCCATGTGTATCAAAACAAAATGGAGGCT TTGTCATTGTACTGCATACAACTGTGTTTAACTGACAAGTACTTTGGTGTTTACTTCTTGTTATTGTTTTTTTGAAACAG CTTGATGAGGCCACTTTAGGAGATGAAAAAACCGACACTGACAAAAACATGGCAACTATGTTTAACGTTTTGAGGAAGAT GAAACTGGTACCGCTTGAAAACCTTATTTTGAACAGAACTTCTTTTGCTCAGACCGTGGAAAATCTGTTTGCCCTCTCAT TCCTGGTAAAAGATGGTCGTGCTGAGATCAAAATGGATGAAAGTCACGCACACTATGTTTGTAAGACTTGTTTCTGCCAC AATCATTGAAATCTCCTTTATATGTATGATCATTACTTCATTATATGTTATCTTCTTTTTCAGCTCCTAAAAATGCTCCA ACTGCAAACTCAGTAATGTCGAAAGAAGTTACTTACACTCATTTCATGTTCAGATATGATTACCGAGATTGGAAGGTATG AACTATGAACTGGTCCAATGCTCATCAAGTGTGAATCCAAAATGTATACTGTGAATTTATTCCAGCAATGGGCATTAGCA TTATTGTTTAGAAAGGAAAAACAGATAATAATGATGTATTGGACACTGGACATTAAATTGGTGCATAACTCATTACTTTG TTTTACTTGAAGTCCTGCACATTAATCTATCCTCTGTAACTCTGTCAACATTGTTTACAGTTAATGAAGGATATCGTGCC TGAGGGGAAGGAGCTAATGCCACATAGGATTCAAGTTTGCACTGAGGATGCTCAGGAAGAGATGGGTGGTGGCGACCATT CCCAAGCAGCTTTGGCTGTATCACCTATCAGAGCTATAACACCTATCCGGAAGCTGAATCGGAACCGAGGGCGGGTTGTG CAGGAGGAAAGCATTGTTCAAGAATCTCCTGAATGTGATAAGGAAAATGATCCTGGAGCTGCTGCTATCCGCAGGTGCAA GCGTAAGATCCATCCAGAATGAGCAGATTAGGTACTAGATCAACTTTGCATTTACTGAACTAGGGATTGTATTTTGTTCA GCAGGTAGAGCTGAGTTTTTGTGTTGTATATTGGATGTAAATATTTAGATTCATCCTAGATCATGCATTTTGGAGGTTGT CATGTAATTGCTGCTTAGGGAGCAAGACATATTTGTGTTTGCATCCACTGGTGCAAGTGCAACTCAACAGAAGATTGTTT CATTGCTTTTAAAGTATGTCGCTATATTAGTGAAATGGGTAAAAGAACAGGTCAACAGTTGGTGATCACGTTCTGTGGCT AATTTAACTAGAAATAGTTGATTTTGGAAACTCTTTACACCAACAAGTGGTTTTTTTCAGGTTGTTATGGTTTGAATGCG AATTTTATTTGTAAGTACTTATCCTTACTGTTACTTTTATGGCTATAGGCTTGCAAGTAGGTAAAAATAGTAAATGAGAA ACTTAGAGCATTTGTGATTTCATT
CDS sequence (LotjaGi5g1v0364200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGCTCAGAGGCGACACCATCGACGGCGACGACGAACAAGCCCGAGCGCTCCCGGAAGAGGACGAGGATGACCCCGA ACACGACACCTCTTGTCGCAGGGTCATTCGCTCACAATTCCTCAAACTCAAGACTCTCATTAATGAGAAAAGGGATGACT TGATCAACACCGATTCCGACAAGTTCGAAACCATATTGGACCAATTTCACAAGCTGCACGAGCAAGTTAAGAAGCCAAGA GAACAGGTTGCTGATGCTGAGGCTCTGCTTGATTTCACCCGCACACTCGTTGGATCTGTCAAGTCTCTCGTCAATGAGGG TATCACCCCTTCTCACTTTGTTTCTTCTCTCCTCAAATACTATCACCAACCTTCATTCAACTGGCAAAAACTTGGCCTTG CTGTTTCCCCCTTTTTCCCAACCGTCGTCAATGGCTCTTCTACCATGCTTGGTCCAATGGAAAATCAACTCAAGCAACGC AAAGTACCCGCCCGAGGGAAAAGAAATGCTGGCCCTACTACAACTGCTAGGCCTCAACAGCTTGATGAGGCCACTTTAGG AGATGAAAAAACCGACACTGACAAAAACATGGCAACTATGTTTAACGTTTTGAGGAAGATGAAACTGGTACCGCTTGAAA ACCTTATTTTGAACAGAACTTCTTTTGCTCAGACCGTGGAAAATCTGTTTGCCCTCTCATTCCTGGTAAAAGATGGTCGT GCTGAGATCAAAATGGATGAAAGTCACGCACACTATGTTTCTCCTAAAAATGCTCCAACTGCAAACTCAGTAATGTCGAA AGAAGTTACTTACACTCATTTCATGTTCAGATATGATTACCGAGATTGGAAGTTAATGAAGGATATCGTGCCTGAGGGGA AGGAGCTAATGCCACATAGGATTCAAGTTTGCACTGAGGATGCTCAGGAAGAGATGGGTGGTGGCGACCATTCCCAAGCA GCTTTGGCTGTATCACCTATCAGAGCTATAACACCTATCCGGAAGCTGAATCGGAACCGAGGGCGGGTTGTGCAGGAGGA AAGCATTGTTCAAGAATCTCCTGAATGTGATAAGGAAAATGATCCTGGAGCTGCTGCTATCCGCAGGTGCAAGCGTAAGA TCCATCCAGAATGA
Protein sequence (LotjaGi5g1v0364200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLRGDTIDGDDEQARALPEEDEDDPEHDTSCRRVIRSQFLKLKTLINEKRDDLINTDSDKFETILDQFHKLHEQVKKPR EQVADAEALLDFTRTLVGSVKSLVNEGITPSHFVSSLLKYYHQPSFNWQKLGLAVSPFFPTVVNGSSTMLGPMENQLKQR KVPARGKRNAGPTTTARPQQLDEATLGDEKTDTDKNMATMFNVLRKMKLVPLENLILNRTSFAQTVENLFALSFLVKDGR AEIKMDESHAHYVSPKNAPTANSVMSKEVTYTHFMFRYDYRDWKLMKDIVPEGKELMPHRIQVCTEDAQEEMGGGDHSQA ALAVSPIRAITPIRKLNRNRGRVVQEESIVQESPECDKENDPGAAAIRRCKRKIHPE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| PANTHER | 14 | 375 | 362 | 2.0E-181 | – | |
| PANTHER | 14 | 375 | 362 | 2.0E-181 | ||
| MobiDBLite | 159 | 190 | 32 | - | – | |
| Pfam | 210 | 299 | 90 | 4.7E-23 | ||
| MobiDBLite | 351 | 371 | 21 | - | – | |
| MobiDBLite | 351 | 377 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Cellular component | Smc5-Smc6 complex | A conserved complex that contains a heterodimer of SMC proteins (Smc5p and Smc6p, or homologs thereof) and several other proteins, and is involved in DNA repair and maintaining cell cycle arrest following DNA damage. In S. cerevisiae, this is an octameric complex called Mms21-Smc5-Smc6 complex, with at least five of its subunits conserved in fission yeast and humans. |
Expression pattern of LotjaGi5g1v0364200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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