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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0366000 |
| Transcript ID | LotjaGi5g1v0366000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptidyl-prolyl cis-trans isomerase; TAIR: AT5G13120.1 cyclophilin 20-2; Swiss-Prot: sp|Q9ASS6|PNSL5_ARATH Photosynthetic NDH subunit of lumenal location 5, chloroplastic; TrEMBL-Plants: tr|A0A068V0G9|A0A068V0G9_COFCA Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi5g1v0366000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:68074412..68075655) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTTGTTGTCCTGCTGCTCCTCCTGCATTAACAAAAACAAGAGCGGATTCGGTAGTAGTGAGGGCCAGTGGTAGTGGT GGTTTTTCTTCAGAATCAGAGGAAGCAGCAGGAGCTGGTCTACAGTCAAAAGTGACTCACAAAGTATACTTTGATATCAG TATTGGAAACCCAGTTGGGAAGCTTGCTGGAAGGATTGTCATTGGACTCTTCGGTGACGATGTGCCCCAAACTGCTGAGA ACTTCCGTGCCCTTTGTACCGGTAAGAAGGGCTTTGGTTACAAGGGCTCCACCTTCCATCGTGTCATCAAGGATTTCATG ATTCAAGGAGGAGACTTTGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGCCGTACTTTTAAAGATGAGAATTT TAAATGTATGTATGTCACTTTATTTATTTATTTATTTATTTTGCTTCTTTTAATTTAACTAAACTCACCGCCTAATTTAG TTTAAGTCCTAGTTATTGCAAATATACTACTGATATCAATATGTATAATGTCTCTCTCTAGTGTCTCATACTGGACCTGG AGTTGTTAGCATGGCAAATGCAGGTCCAAACACAAACGGGAGCCAGTTTTTCATTTGCACTGTCAAGGTATATTTCTCTT CTTAACTACTTCTTTTAGTCCATGCTTTTTCTGGTTGATTATGAAATAAATATGCTATATTCCTAACTAAATGTCTGTTT CAACTCTTAAGGTTCCTGGCTTCCTGCCTATGAAAATGACATACATTTTCGTTATGCTACTGGTATCAACTGTCTTTTCT CTATGCAGGTTAAATAAGCCTGATTTTCAGTGTTAGCTGACATTTGCACATTTTTCTCTACACTTACAAAGATCATTGAT TTCATACTCAGATGTGAAAGTCTCATATTTAAAAAACAGCACTTTTTAATTTAGATTGTAATTAGATTACCACATTATTC CTACACTGAGTCACTGAGATTGATTAGTGTTTATGATGACAAGTTAAAACCTCTTAGTATCTAGTGAACTAAGGGGAATT TGTTTATAATCCTTGGTTTTGACCTAATAAACATGTCTGATGAATTGACAGACACCATGGCTGGATCAGAGGCATGTTGT ATTTGGCCAAGTTTTGGAAGGCATCGACATTGTTAGGTTGATTGAGTCACAGGAAACAGATCGTGGTGACCGTCCTAGAA AGAGAGTGGTTATCATTGACTCTGGTGAGCTTCCAATTGCTTAA
CDS sequence (LotjaGi5g1v0366000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCAAGGAGGAGACTTTGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGCCGTACTTTTAAAGATGAGAA TTTTAAATTGTCTCATACTGGACCTGGAGTTGTTAGCATGGCAAATGCAGGTCCAAACACAAACGGGAGCCAGTTTTTCA TTTGCACTGTCAAGACACCATGGCTGGATCAGAGGCATGTTGTATTTGGCCAAGTTTTGGAAGGCATCGACATTGTTAGG TTGATTGAGTCACAGGAAACAGATCGTGGTGACCGTCCTAGAAAGAGAGTGGTTATCATTGACTCTGGTGAGCTTCCAAT TGCTTAA
Protein sequence (LotjaGi5g1v0366000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGIDIVR LIESQETDRGDRPRKRVVIIDSGELPIA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 105 | 105 | 1.5E-59 | – | |
| PANTHER | 1 | 105 | 105 | 1.5E-59 | – | |
| Pfam | 1 | 101 | 101 | 8.8E-31 | ||
| ProSiteProfiles | 1 | 104 | 104 | 29.577 | ||
| Gene3D | 1 | 108 | 108 | 5.5E-51 | ||
| SUPERFAMILY | 1 | 105 | 105 | 2.05E-46 | ||
| PRINTS | 36 | 51 | 16 | 4.1E-22 | ||
| PRINTS | 51 | 63 | 13 | 4.1E-22 | ||
| PRINTS | 64 | 79 | 16 | 4.1E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein peptidyl-prolyl isomerization | The modification of a protein by cis-trans isomerization of a proline residue. | ||
| Molecular function | Peptidyl-prolyl cis-trans isomerase activity | Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). |
Expression pattern of LotjaGi5g1v0366000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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