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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0366500 |
| Transcript ID | LotjaGi5g1v0366500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U2 small nuclear ribonucleoprotein A; TAIR: AT1G09760.1 U2 small nuclear ribonucleoprotein A; Swiss-Prot: sp|P43333|RU2A_ARATH U2 small nuclear ribonucleoprotein A'; TrEMBL-Plants: tr|I3SUJ1|I3SUJ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0366500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:68128246..68135781) extracted from Lotus japonicus Gifu genome v1.2.
GGGTGAGGTTGGGTGAGGGTTGGGGAGCGTGGGAGGAAGGAGGGGGTTGGGGTTGATGTTGTTGGGGTTGGGGTTGATGT TGCTGGGGTTTGAGGTTGGTGTTCTGGGTTTGTGTTGTTGTGTACTGGGTTGCAGAGTTTTGAGATTGGGAGGTTGAGTT TGTTGGTTCTGGGTTTTGTGTTGTTGTGTACTGGGTTGCAGAGTTTGTGTTTCTGGGTATGAAATCATGATGATTGAGAG GTTGAGTTTCTGTTTCTGAGTTTTGAGATTGGGAGATTGAGTTTGTGTTTGAATCCTCATGCTGAAATGATGATGATGAT TAAAAGGAGAGGGAAATGATAATGGAAAAGAAAAAAAAATGGAAGAATTTTTATCAGATTTGTCAAAGATTGTTCATATC GAGTTTGGTTTTGGGGTGTTTTGATGATGATGATGATGATTCTGGAGTGTTTTTTTTTTTTGAATTAATTTGGGGGAATT GAAGTTAATTTTGGGGAAAATTAGTTTTGTTAATTCATTTAGGTTTAGATTTGTTAATATATTTAATTTTAGTTAATATG ATTAATGATCTGACATGTAATTTTTTTAAAATTTTAATTTTCTTTTAAATCCACATAAGCATAACTAACACAGTCAGCGA TCCAAATCATCACTCGCCGGAGCTCCGCCCTCCGGCGAGGATCCGCCCCAAAAATATTTCAAAGACGAGGACCAAATGCA ATAAATTTTCCGGCGAGGGACTTAGATCAGACGGCGAGACAAAGATAGGGACCAATATGATGTTTAACCCCTATTCCATA TCCTAACAACAATACATTGATTTTGTTTTGGGTTCGCACGGTGCCTATTTCTCACCGTTGGTGGCCGCCGCTTTACCGTG TCAGAGAGACAGCCTAGCTTCAGCTTCTATTCTGTCTATAGGTAAATCATCCTGCTCCCAGTTTGGTTCTGAAGTGTTTC TTTGTGAAATTTCATCTTTCGATTTGAACGCGTCATATACTACGCTTTCTCATTGGAAACCCACCGTGCTGTCGCCGGTT AGCTGGGCATGATCGCTCTAGCTAGCTTCTGCTCCTTTAGTGAAAATATAAGCTGTAATTTGACGTGCCTTTATCAGGGG TAAACTATTCTTTCTGTGATTGTTTTATTTTGTGCCGTTTCCGAAATTACATTTTGTAATTTGATCAAGCATTCAGGTAT TCATTCTGGGCGCCTATCATCTGAAGTCACCATTTTTGCAGTAATTATCTATTCCGCTAGAGGGAGATGGTGAGGCTCAC TGCAGACTTGATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAAGAGCGCGAGTTAGATCTTCGAGGTCTCCCATTCA CTCCCCCCTCTCCCTTGTTCTGTTTGACAAATGAATTTCTTTTAGTTCATCATTGACAACAGTTTGTCATATTGTTGGCA GGCAACAAGATTGCTGTAATTGAAAACTTAGGCGCCACAGAGGTGCACAATTTAATCTACTCCTTTTTTTTTCTGAAAAA AATAGTTATGACTCTATGCTTCAATTAAATCTTTTTTATGGCTCATCTTGATGTTCACAAATGCCTTTCTTGCAGGACCA ATTTGATACCCTAGATCTGTCTGACAATGAGATTGTCAAACTGGAAAACATACCATATCTTAATCGGTTGGGTACACTAC TCATAAATAACAATAGAATTACGAGAATTAATCCCAACATTGGAGGTAGAGTTTGAACTTTGAAGTGGATCTAATCTCAT CATTTCTCTTTGTTACATCTGTCACTACATTTTTGCCTCCAGTTTTAAGCAATACAATGTGTTACCCTAGCTTACTATGT CTTTTGTATTGCAGAATTTTTACCAAATTTACACACGCTTGTTCTCACAAACAACAGAATTGTAAACCTAGTAGAAATAG ATCCTTTAGCATCCCTTCCAAAGCTGCAGTTCCTTAGTCTGCTAGACAATAATATTACAAAGAAAGCAAATTACAGGCTT TATGTCATTAGCAAGCTGAAGTCCCTCCGTGTTTTGGATTTCAAGAAAGTGAAAAATAAGGTAATCTTTTATTTGTCACT ACTTTTCTAGGGCTCATTTTTTGAAGTATAAACTATAGGGTGTTCTGATAATGTCTGCAGCTCAATGAATACCAGCTTTT TAAGCTTCATAAGCAGCTTGTACTACTTGCAATGAACACCAAGACCAATTGTCGAAAATCTTCCACAAATAAGTGTATAC TATGGAGCAATTTTTTACCAGGCTGCTTTGGTCCTTACTTTGCTTAGTCTGTAATTGACTGAAACTGAATGACTTGAAAT TTAAACAAGATATTGGGTGCAAAGATTTTTTGTCTTATAGTCATTTTGCACTTGCATGAAGAGTTTCATCACCTTACTAG AGACGATTGGATCTATTTCTTATTACCAATTACACATACTTCTCAACTAATGTCCTTCTGATGGTTATTTAAATTTAATA GGAACGGTTGGAAGCCAAAAATTTGTTTGCTTCAGAGGAAGTTATAGAAAAAGTTCAAAAGACACCAGTGAAAACGATTT CACCTGGTGAAACTCCTAATGTTTCAGAAGCTACGGAGGACCAACAGACACCCAAAGTGGTTGCTCCCACACCAGAGCAA ATTATTGCTATTAAGGTATATGATATGTGAAGTTATCAATTAATGTAAGGCTGTCATTATAGGGGTGACCATGTGACTTA CACGTTGTTCAACTCAGATATTTAATTAAAGCATTTGATGTATCTTGCTAAAGTAGAGGGTTATACCCCGTGATAACCAC AGTTCCCATAAAGGTAATTCCATTGAACATGTCACCTTAAAGTACAAAAATAGTCTTAGCTAGAACATGTTATCTTACCT ACAAACATGTAAAATCTCTTTTATATAAAACCTATATAGTACCATTATCCAAACAAAAGGCTTGAAGCGTTCCTCTGCTT CTTAATTCTTGCTATTTTAATTTTTCTCTGTCAGATTCAGATAAATATAACTTTAGTAATTCATTAAACATTAAAGGAAC AACATTGATCCAGTCAGTCCTGCTGAGTTTCTTGCATATAAGCTTCGTGTATCCATGAAAGGTTTCTGTTAAACTAAATC AACCGTCTCAACTCTAAAATGCATAGCAGGTGCTTTGTGATTATCTGCTTTTGAGATTGCCTTATTTCAGATGACTCAAT CCTGTAAGTTAGAATTATGCTGTAAGATGCATATGCTTGTTGTTCCTTCAGCGCTTGTGGTAGTTCTTTATTGGATAACC ATTTTCAAATAAATTACCTTGCATGCGTGTGTGGTCATCTTCTGCTAAGAAATCACCTCTATTTGGGGTTATAGTGAAGG ACCATCTTCATATCTTAGAGAATGGTGCATCAAGCGGCTAATTGTGATTACTATGGTTTCATATTTTTACTCAATGCAGG CTGCCATCGTGAATTCACAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGGTGATTGCTTTTTAGTTTAGATAATCACTT TTTGGATTTTAAATTGTGGTATTGTCATATTCATTCATAACATAATATTGAAATTAGTTGACATAGGAGATTTTATTTAT AACTAATAGCCTGCTTTTAGAGAGGGAATCTGATGTTTCAAGTGGAGGCTCTCCCATGAAATGTCTTGTTTGTTATTGGA GCTCATAAACATTCTGAGTTTTTGTGTCAGCATTTGCTGGCTTAGAGTATGCAAACTGAATTCTTTGCCATGTGAAGAGG GTGGGATTTGGTTTGCCGTTAGTCGAGGAGCTCATCTTGTTTACCTCCGGTGGTTTGGGAAAAAAGCAGGAAACCATTTT GAGATTCTTGCTACAGTTCGGTTTCGTGGGAGCTTTGTTATAATATTTTCTCTGGCTATATCCTTTTTATCATGAAACCA TATTACTTGCTTAAAGCGCTCATCTCTTTCTAAATAATTTTTTTTTTATCTATTTTGAAAAGGCTGATGACTGTAATCTA ATCGGGTATATGATCACAGGCACTGAAGTCTGGTCTACTCCCTGAAGATTTAAAAAGCTTGAATGGCAATGTAACGTTGG ATAATGTTAATGAAAAAGGTGAAGATGTGGTTCATGATGAATCTAATGATACGCGAGAGCAGAGAAATACTGATTCTGCT GCAATGGGACAGGTATCAATTTCCTGTTATGTGTATGTCAAACTTTTCTTCTGAATCTCTGGCACCTCAACATTCTTCTG AATCTTTGTTTTTTTTTTGTCCCCTTTCTGACACCCCTCCCCAAAAAAACCCCGTTTATGATATTTGATACTTCCATGTG TTTTTTCGTTTTAACATTCCGCTTCCCACTATGCTAGCTCTGTTCTCAGTTCTCACTTTCCTTCCACGGCCCAATGGCTG TTTTGCTCTTTCACCTATTCATTTTTTTTTTCCTTTTGTTTTTGTCTTGCTTTCTATCTTTTATTGTTTCTTGAACTTGA TGGTGTTTTACTTTCTATCGAACTGAAGCTGTGTTCTATTTATGATACCGGTTCAGATTATTGTTTTTGACATAGATTGC CAGTTTTCCCTATTTTATTATCTGGCGCAGTTTTTGTGTGTGTGTGTGTGTATATTTATTTATATGGCCACACTTTTGCC CTAATCTATAACGCCTTCCACTATATTTCTCTATTGGATTTTTGGCTTCCCACCATAAACCCCAAGGGGCTATTTCATGC CATAACCCTATTTGAGTTCCCTTTTCTCACTGTCTCTGCCTGTATTTGCGGTTTTGGCGGGAAAAATAACACCATTGAAC TCACAATGGAGCAAGATGAGTGTATGTTAGGACCCAATTGCAAGGTATGGGACTTGAGTCCCACATTCGAAGTATGGGAT TCTAATGTGGGGTTTATAAGGCCTTGGGCTGTCCAACTTCAACAGCTAGCTTTTGTGATGTGGTACTCCCAAGGTTCTTA TCAATTGGTATCAGAGCCTTCCACCATGTCTCTCAGCTGCAAACGAGCGGCGCGGGTGGTGACGCCGGCATTGCAGTGTT CGCCTGGGACCAGTCAAGGGGCTAGTGCGCAGCCCAGCCCGCGTGGGCGACAGGGCTGCGGAACGTGGTGGGATGTTAGG ACCCAATTGCAAGGTATGGGACTTGAGTCCTACATTGGAAGTATGAGATTCTAATGTGGAGTTTATGAGGCCTTGGGCTC TCCAACTACAACAGCTAGCTTTTGTGGTGTGGTTCTCCCAAGGTTCTTATCAGTGTACCAGCGGAAGATGAAAACATACT GAATAACAGGAGAAAAAATAGGAAGAAACAAGTAGATGCTAAATGCTATCTTTGTTCCTGAAGCCCATGGCTTATCCCCA TTATTCTAGATTTCTAACTATCCTTCAAGGTCATGCGCCTTCCCTATTTGGAAGCACCTCAATTCTCTACATTGCTCTTG GGCCCCACTCAATTTACTCTTACTCTCTTAGCTTTACTGCTTCTCTCCCTAATGCTCCTCCACGTGTCCCTTTTTCCCAC TTCTGCAATATACCATATCTTGGGGCCATGGCTCTACTGCACAGCACTACTGGGCCCTTATCAGTTCACTGTGTTGGGCT CAAGGGTCTCAACAGCATGTCCTGTTTTACATTCTATTTTTTGCTGCTATTTGTTGCTTTTGATTAAGGGCCTGTTTGGA TTGGCGTTAGAGAGGGCAAACGGGCGTTGCGTTGAGATAGACGTGATTTACCTGCTTTGTTTCACCGTTTGGATAGGCGT TTTTTTTAACGCAACAACGCTGTTCCCGTCCATAATCGCGTTTTTCTGGAAGCCAGAAATTGGAGCTGTGGCGTTGGGCG TTGAGCGTTTGGTGTTTGATTTTTGGATTTCACCAACTCACCTTTGCAGATCTGTGAAGAGGCGATCGATGTTCACGCTC TGTCGTTCGCAGACCTCTACTCTGGCCACTCCAGATCAGATCTGTGCCACTCCGGCCGCCGTTCACGCTTCGCTGTTCGC AGCCTTCCACCAGTCCACCGTTCTTGCTCCTCCTTTCCCATGGAATTGGTGTCCCTGATGAACCACTGAACCTCTTTGTT TAGATCCGTGTACTCACATAGCACTGAACTGATTTCTCCATTCTCCATTTGCATAATTCTCTGCCTCCGTGAACTGGTTT ATCGTTTCTCTTGGTTTTTTTTTTTATTTATAAAAAGCTCGTTATTTTTTTATTCAACGTAATGTTTGATTTGTTAATTT TTTAATTCAGTGTGATGCACAATGTAATATTTTTTTGATTAAAATAGTCTAAACGTATTCCAATTTGTACAGGAAAAAAA AAACAAATAGTCTATACCTTACTTTCCCTAATTTCATCCAAACAATATTCATTTTCTTTAAATCACGTTTGTTACAAATC ATCCAAACATAAATCACGTTTACTCAAACACAATTTTACTCAAAATCATTTTAACAAAATCACGTTAATTCAAATACCAC GTTTCTAACGGGATGCCAAACAGGCACTAAATGTGGCTTTTCTATGTTAAGATTTAATCACAACATCATGTTTTCTGTTT CTTTTTTTTGTTGAGAATTTGAGGAAGAATTTGAGATTTTTATTCAATTCCATCCCATTCTGCTCTGTTCCATTACATTC TGTTTTGTTCCATTATCTTTTCCCAAACCAGTTTATGGAGGACTTAAATCTATGGCTTAATTGCACTTTTTGTCCTTGAT CTATCGTGATTGTGCGATTTGGGTCCTCAATTCTCAAAACGAGCGATTTGGGTCCCACATGCAATTTTGGTCATGCCGTC AGTGTTCTCTCCAAATGCTTATGGAAGTGGGTGATGTGGACCTCATTTAATGATCTGGCACCCAACAAAGCATTTACATA GATAATTAATTTACAAATAATAAAATATATGTATCTGTTAAAATATTAAATATTCAAACTGCAAGAGGAAGGAAATGTTA ATTTCGTACACCATATCTTTTTATGTTTTCTTATGCGATATGTAATGCTTCAATTTTTATTACATTTTTTTTTTGCAGGA TTAAGTGTAGATTTTGGCTGTCCCGGCACTGTGCACTCCACTTCAATGTTGATTTCTTGAGTCAAAATCTTGGTAACTTT CCATGAAATGTACTGGTGGTTTCAATTTCCCTCATGGTGATTGTCTGCTTTAGCGCTTAATATGTGTTGAATTTGATTGC CTTTACATTTTAATGTATATTTGGGGCATTTTTGCCCCTAGCCATGTGAATTTCTGGTTGAAGACAAGTTTTGTTTTTGA TAGGCTGGTTGAAGACAAGTAATTTTTTTTTAATCTTTTGAGCATATGACGATGTGAGCTGAAAGCCTGAAGCATCATTT TAATTAGATTTAAATATTTGGGGCGACTGTTCCTTGCAAAAAGGAGAAAGATAACAACGGCATAGTTGTCACCAGTAACC TATTGAAGGAGCTAAGTAGCTTAAGATCAAAATTGCAAAATGGTCTCCCTAGTTACGATGAAATCAACTGGGATGATCTT TAATCTTTATCAACAC
CDS sequence (LotjaGi5g1v0366500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAGGCTCACTGCAGACTTGATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAAGAGCGCGAGTTAGATCTTCG AGGCAACAAGATTGCTGTAATTGAAAACTTAGGCGCCACAGAGGACCAATTTGATACCCTAGATCTGTCTGACAATGAGA TTGTCAAACTGGAAAACATACCATATCTTAATCGGTTGGGTACACTACTCATAAATAACAATAGAATTACGAGAATTAAT CCCAACATTGGAGAATTTTTACCAAATTTACACACGCTTGTTCTCACAAACAACAGAATTGTAAACCTAGTAGAAATAGA TCCTTTAGCATCCCTTCCAAAGCTGCAGTTCCTTAGTCTGCTAGACAATAATATTACAAAGAAAGCAAATTACAGGCTTT ATGTCATTAGCAAGCTGAAGTCCCTCCGTGTTTTGGATTTCAAGAAAGTGAAAAATAAGGAACGGTTGGAAGCCAAAAAT TTGTTTGCTTCAGAGGAAGTTATAGAAAAAGTTCAAAAGACACCAGTGAAAACGATTTCACCTGGTGAAACTCCTAATGT TTCAGAAGCTACGGAGGACCAACAGACACCCAAAGTGGTTGCTCCCACACCAGAGCAAATTATTGCTATTAAGGCTGCCA TCGTGAATTCACAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGGCACTGAAGTCTGGTCTACTCCCTGAAGATTTAAAA AGCTTGAATGGCAATGTAACGTTGGATAATGTTAATGAAAAAGGTGAAGATGTGGTTCATGATGAATCTAATGATACGCG AGAGCAGAGAAATACTGATTCTGCTGCAATGGGACAGGATTAA
Protein sequence (LotjaGi5g1v0366500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTLDLSDNEIVKLENIPYLNRLGTLLINNNRITRIN PNIGEFLPNLHTLVLTNNRIVNLVEIDPLASLPKLQFLSLLDNNITKKANYRLYVISKLKSLRVLDFKKVKNKERLEAKN LFASEEVIEKVQKTPVKTISPGETPNVSEATEDQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGLLPEDLK SLNGNVTLDNVNEKGEDVVHDESNDTREQRNTDSAAMGQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 274 | 274 | 4.0E-119 | – | |
| Gene3D | 1 | 174 | 174 | 1.1E-45 | ||
| PANTHER | 1 | 274 | 274 | 4.0E-119 | – | |
| Pfam | 1 | 167 | 167 | 3.0E-76 | – | |
| SUPERFAMILY | 12 | 159 | 148 | 7.99E-29 | – | |
| ProSiteProfiles | 20 | 41 | 22 | 6.657 | ||
| ProSiteProfiles | 43 | 64 | 22 | 7.658 | ||
| ProSiteProfiles | 65 | 86 | 22 | 5.771 | ||
| ProSiteProfiles | 89 | 110 | 22 | 7.589 | ||
| ProSiteProfiles | 114 | 135 | 22 | 6.126 | ||
| SMART | 128 | 146 | 19 | 0.0075 | ||
| MobiDBLite | 177 | 199 | 23 | - | – | |
| MobiDBLite | 247 | 280 | 34 | - | – | |
| MobiDBLite | 253 | 269 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0366500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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