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LotjaGi6g1v0002200.2

Overview

Field Value
Gene ID LotjaGi6g1v0002200
Transcript ID LotjaGi6g1v0002200.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Pentatricopeptide repeat-containing protein; TAIR: AT1G12300.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial; TrEMBL-Plants: tr|A0A1J7GLU8|A0A1J7GLU8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0002200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:580010..589174) extracted from Lotus japonicus Gifu genome v1.2.

TTGGGAGCAAGTTGATTGTGGATGCTGGACAAAAAAGGGGGATCTCGGGCTACATTCCAAAAACATCAATTCAATATTTC AAGTTCATAGCACTTTCAGACTGTGAAGCAGAATGGAACAAGGGAACCAACCACATCAAAGAAGAAGGTAAAAGCAATTC TCTTATGTACGAAGTTGCTTTTCTTTGTTGATGTCTCACACACACACACACACACACACACACACACACACATAGCTAAT CTCTCTGGTGCAGAGTTTTTGAGCATTAGATTCATCCTACAGTTCACAATCATCAACCAGCTAAGGAAACCTTGCCTCAC TCAGTGCACCGTTGGATGAATCTAACGATCAGAAACTGAAACCCAAAACCCCTTTCACGATTGTGGCGCCCTATAAGTAT AAACCCAAACCCAAAACCCCTTTCTTTCTACATCAACATCTACATCTACATCTACATCTACATCTACATCTCTCTCGCAG CAACACTGCTTCTCTGGACTCAAAGCTCAAACTCGTTCTCATCTGCAATCTCATTTCACTTCAGTACGTACGTCATTCAA TCTCATCTATTTTGTCTTTTCTCCTTCAAACTTGTTTTCATGTTGAATTGAATCTCTTGCACAATACAGAACACCAAACC AAAATGCTTCTAATCTGTTTCATTTCATACTAGCTTTTTGTATTCAATCTCCTGTCTAATTTTACTGCTTTATTCATTCT TATAAATAGCTAGCTTAAGGGACACAAAGCTGGATTTAGTGAGTCTTCTTTTTCACATGTTATATGTAACAAGGAATGCA ATCCCCAAACTTCCTCGCATTCTTATGCCGTCCTCTTCCTTCCTTCCATATGCTCAACAGACCAGCCACCGTCTTCATTC AAACTCCTCATTGCCACCGCAAAATTCCTACTATTGATGATGCTGTGGCTTTGTTTCGTCGCATGCTCCATATGCATCCC CCACCATCGGTTGTGGAATTCACCAAAATCCTAGGAGCAATTGTAAATATGAAAGACTATGCCATACCTATCTATCTTTA TACTCAAATGGAATCTAGGGGCATCCTGCCATATACAGTTACTTTAAACATCTTGATGAATTGTTACTGCCATCTGGGTC AGCTGGGTTTTGCTTTCTCTGTACTGGGTAAGATTCTTAAGTTGGGTTACCAACCAAGTGTTGTATCTTTGACTACACTA ATGAAGGGCTTGTGCATTACTGGTAAGGTGTTGGATGCATGTACAATTCATGACAATATAGTCTCAAAAGGGTTCCACTC AGATGAAGTTATGTATGGAACCTTAATGAGTGGTCTGTGTAAGAGTAAAGGATCAGGAAATGCCATTGAAACACTTCAAG AATTGGAGGCCTTACAATTGGTTAAGCCGAATTTTGTAATCTACAATACAGTCATTCATGGTTTGTGCAAAGATGGACTT GTAAACAAGGCACAGAAATTGTGTTCTGAAATGATTCAACGGGGAATTTTCCCTGATGTTGTCACTTTTAGTTCGTTAAT TTATGGCTTCTGTCATGCAGGTCAGTGGAAAGATGTCAGGTTATTGCTAAATGAGAAGAGTCTAGATGTTTGTTCCTTCA ACATAATAATGGATGCATTATGCAAACAAGGGCTGCTCTTAGAAGCCCATGCTGTTTGTTATGAGATGATTAAAAGAGGT GTTCAGCCTGATGTTATTTCTTACACTATTTTAATGGATGGCTATTGTTTAAAAAGTAAAGTGGACGAGGCAAGAAAATT ATTTGATATGATGATTGAAGCGGGTTTGGTGCCTGATGTTTGGAGTTATAACATCCTGATTCAAGGCTACTGCAAGATTG AAAGAGTCGATGAAGCTATGAATCTATGTGAAGATATGCTCACTAAGAATTTAGTTCCAAACACTGTCACCTACAAATAT CTGTTTGATGGCTTGTGCAGATTTGGGAGACTCCCTGATGCATGGAACTTTCTTACTCGAATGCATTATCGTGGCCATCG ACCCCCTGATCTTACCCCTTACAATATCATATTAGAAACTTTATGCGAACAGCATCTGGATAAGGCAAACAAAATTTTTA ATTCCCTCATCCCTGAACCTAATGTTCAGAGTTACAACATCTTGATTAGTGGTTATTGCAAGAATGGAAGAGTAGATGAA GCTATGAGTATTTATCAAAATATGTGTTTGAGGAATATAGTTCGAGATAGTGAAACCTTCAAGTTGTTGATAAATGCTTT CTGCAAACGGAAGCAATGTGACAAGGCAATTGCATTATATAAAAATAATCGTGACTTGTGCCCATTCAAAATACTTATGG ATGGCTTGCGCAAAAATGGAATGGAGGAGGTAGCACAGAGGGTTTCCCAGCTTTATGGAGCCTGTGATCCAGATGTGGCA TTAGTTCGGAATCAATTAGCTCTCTAAAGATGATTTGGCAGAATCCAGAATGACCTTGCGTTGCTCTGTGAAGATAATTT CACCATTTTCTCGTCCTCCCTGTTTTCTCCCACCGTGTCCCTCCATCCAATTTGAAGTTCAGGTGATATTTATTGCTCAC TTGAAGCTTAAAGTATATACAGCTGTTATTATAAATTTCGCTTGCCTTCTATTACAATTGCTATTTGCTATCAAGTTTTC TTAGACTTGAATTTAACTTAACGCCCATGTTTCACCTTGGTAGTTGCTATTTCACTTTTCCTACATCATTTGTATTTTAT ATGTATGTATATTCTGGTAAAATGAAGAAGTTAAAAGAAGCAGCAATATTTCAACTTCACATCTAATGGCAGGAGGTAAA TAATACCGTGGGGCCAACAGCTCAAAGAGGAGTTGCTCTGTTATTTTCTGCTCCTGCGCTTGCATTTTCAAGGTGGTGTC AAAGGAAACCACAAGAACTTCCCCTGATGTGCTGGTGAGCCTTGTCAAATTTTTACTTTGTTTGAACTCGGTATTTAGAT GGAATTTGATTTTCTTACATCTATTTCCAGGTGATAAGGGTCTTAAGAGGTTCAACCTGATGTTATTTCACTATTTTAAT GAATGGATATTGTTTAAAAAGTAAAGTGGATGAGGCAAGAAAATTATTTTTAAGGGAAACTGGAATGCCAAAGGCTGCAC AGTTGCTGGGTCATCTCCATTTTTTCCTCCTCCCCCTTTTTTCCCTCATCACTTCCCTCCATCCAATCTGAACTCCAGGT AATATTTATGAGAAATAATTTTTAGTACGGAAAAAAATGTTAATAATTATGTAAACCTTTGTTTTTTTTTCCTTTCAAAA TTTGCAACTTTTAATCAATTTAGCTTTCCATTTTTTTTTCTGTCTAATGCAATTCTTGTGATTCTTCTAAAATCCCTTCG TCATATATAGCACTCCTCAATATTTATTGGTCACTTGAAGCTTAAAGTTTATACGACAATTTCTTAAAAGTTTCACTTGC CTTCTACTACAATTCCTATTTGTTGTCAACGTTATTTTCTAGTCTGGACTATGGATTTTAACTGAAAGCACATGTTGAGC TTTTTTGTTGAATAATGGATGTGGCTTATATTGGCTACCATATTCCATGTTTTTCTTTTTCTAATTTCTTTTATTAAGTG GCTTTCATTTAGTTGTCAGGATCTGAATATGGTGCTTTCACTCAACATTTTAGGTGTACAGTCCTCTGCTAGAAAGTTGT TGATTTTCTTGCTGAGTTTTGAAGGCTAAATTCTTTATTGACCCATTTGGAATACGAAAGTAAAGTCATGGGTCAGTTAT ATCATTGGTTCAGGATCTGCTTTTCCTACGTGGTGTACATTATTTTATATGTATACAATTTAATATCTAATGGTAGGAGG TAAATAATACAACTGCGCCAACTACTCAAAGAGGAGCTTCTCTATTATTTGCTTCGCATGTACTTGCATTTTCAAGGTGG CGTCGTCAAAGGAAACCACAGGAATTTTCCTCTGATGTGCTGGTGAGCCTCGCCAAATAGCTACATTGTTTGAACTTGGT AATTAGTTGGGATTTGATTTCCTGACATCTATTTCCAGGTGATAAGGATCCTGAAGTAACATCCTGGTGAAGCTTAAGAG GTTCTTGCCATGAGAACTGCAAGTTTCAACAGATACCTTAAGCAATAAGAATATTCTTGGAAAGGGAGGGTACAAAAGGT GCTTTGCAGAAGGTTCATTGGTACTATAATGGAAATGTTGCCCCATGCTCAAGAGGTAGATCTTTTGCAATTTTCTCCCT TTTGTCGTAGGGAAGACTGATAGAAACCAGAAAATTAGCAGTAGTTTATTGATAGAACCCTAATTCCCAATTGGGGATTA GGGGAAAGATACATGAGAGAGATACCAAACACCCTCTCTAACCCTAGAAAGAGAACCACTTCTCTCTCTAAACCCAATTC CTAACTGAATACAAAGATACCCCTAATGTTCACTCACCTCTCTTATTTATAGGCAACATGCCTTATACCTGTCTAACTAA CTTCCTAACAACTAACAATTCCTAACTAACCCTGCATTCCTATCAATACTCCCCCCCTGAAAATTCACCTTGTCCTCAAG GTGAAGACAAATGACAAGCTACATCATGGAACAACTATCTCAAGAATCCAAATGGGACAAGCACAACTTCCACCTGGATC CCATTGCAGAAAGCAAATATTCCCAGCCACATAAGAATTGGATATCATCTTCATAGGCCAACTCAAATAACTGTTGCCAA GGTTCCCATTCTGGAAAAACAATGTGGAAAAGACCAAGCGGTTGCCAACAGGTTGAAGAAGCAAGGTAGCAGAACCTTCA AAAACTAGCCTCCCCAAACTATATAACTCAGCACTTTGAGAACCCAAGCTGTAAAAACCAGCAGCTAACTCAGCTGAATC CAAGCCCATTTCATGCACAGCTCTAATTTCCACCTCTTGAGCCCACCTTCGAACCTGGGCATGACCCATCTTTAGCATAG CATCACCCTCAACAGTAGTGAAAACCAGAATATAGGGATCTAATGAATGCCAAATTATCAAAGGTACTCTAGTGTGATCA AGGTGGCAAAGGAGCAATATGAAATTGGAAGATTGCTTGTTCCTGTCCTTCATTTTAGTCACTGTCATTACTTTAGCCAT GTCTTGGATACAAACAGCATAATCTCCCCAATTCCTTGCCATGTTGGCTGTGAAAATTGACTCATCATCATGGGTCCCTA GATTGCTGAATAGTTGATACTTGAACTCAGCAGGGAAATAACCACGAGGCTTATAAACCTCATTATCAACTCTTTGGACC AAGAACTCAAGTTTACCCCAATATTCTATACTCCTCAAAATGACAATATAGAACAAATCACTTAAATACTTGTTCTTAGC CCCCACTGTTCTTCGACTTCCTCCCCCCATTCTCATATTGTGTCCACCCGGATCAATTAATAACCCCAAAATACTGTCTT GCTCCTGTCCAGTACCAAGATGGCCAAAACTGTGTTGCAACTCACAATCAAAGCTGAAGTATAATTTTGACACAGCAATC CCATCCTCTTCAATGTCTACACTTGTAGTCAGCAGCATAGTTCTCTGTAACTCTTTGAAATGAGTTCTGGTTCCCTGCTT CAAGTACATGGGCAAATTGGGTTTTGACCCAAAAGCTGATAAGTTGGCCCAATCTATTCATTTGACTCCCCTATTCTGTT GTAAGGCCCAATTCCCCCTTTTAGTGTTTTGGGATTGTCCCATTCGCTTAGAAAAAATGTTCAACTCAGACCCAATCCTT GCTGGCCTCGTCTCTGTTTTGAGATCATTCCAGAAACTGTACCACTCACGCATGGTTACAGTGATCAGTTTAGCTTGTCT CTTATCTTCCACTTTCCCTTTGTTCACCACACAAATAGTTGATTTCGATGAATTTAGTGGCAGAAACTGTACCTGCATGC TTGCTGCCTTCATCTCCTTCGCTTGTGGAATTGCTCTCGTCGACACCTCTCTTGCCGTTTGCGAAGTAGCGAACTTTGCA GGAGTACTGTGCTCTGACGGATCCAATGATGGAGGCAGATCCTCCTTGCGACATTGGAGAAGACTCATCTTCAATCTGTC ATCTCTCTTCAGTCTTCCCCATTGGTGCACGACTTGCGACGATAAACTCCGCCGACGTCGACGCCCCCGCCCACAAAGCC CCAATATTAGGCGGTTTCGCCGGTGGACGATTTATCATCTCCGGCATGCAAACAAGCGTGTTTGGTGGTTTCACCAGCGA ACGTTTTGTCTTCTCCGGCCCACCAACAAATGTGTGTGATCGCTTCCATGGTGGCTGCATGGTGGTTTCCGTCAAGGTGG CCTCCGCAGCAACTCGAAACATCGTGCCCAACACATCACCATTTTGGACATGCAGGATCTTGCCACTCTTCATCTCCAAT TGCGGCATTGCTACCTCTGATGCAAGATTGAAGCCCTTCATCGCAAAAGTTAGGTTTTTCTCCACATCTGAAGCGAACTT TGATTCCTTTCGCATTGCCTCCGCCGCTACTCGATCTTCCTCCGCCGCTTCAACATTGGGTTCCAGCGTCTCCTCAGAAG TCAAATCTTCCTCTACTTCTGATGGTTGCTCACCCACCATAGCGTATCTTTCTTCTTCCGCCATCGTCTTCGTTCCTCTC AACAACGTCGTCGCTGCCGCTGTTCGCCCCGCTTCGATTGCAGCCTCTGATTCTCTCTGCGCAGCCTCTGCTTCTCTCCT TTCTTGTTCCCTCTGTTTTCTCCTCTCTTCAAGATCTCGCAATTTGTTCTCCAATCTTGAGATTTCTTTCTCAAGATCAG GATTTGTAACTAGTCGCACCCCCATTTTCTTCGCCACCGCCGCTAGGTCGAACTCGTTCTTCCCGGTGATAGCCTCCACT GACTCCATCCTCGCTCTCAATTCTTGGTTTTCCTGAACAACTTCTGAACTTGCCATTCTTCTCCTTTCCTCTTGCGCAGC CTAGGATTGTCGTGGTTCAGGCACCAGGATGGTGCTCTGATACCAATGATAGAAACCAGAAAATTAGCAGTAGTTTATTG ATAGAACCCTAATTCCCAATTGGGGATTAGGGGAAAGATACATGAGAGAGATACCAAACACCCTCTCTAACCCTAGAAAG AGAACCACTTCTCTCTCTAAACCCAATTCCTAACTGAATACAAAGATACCCCTAATGTTCACTCACCTCTCTTATTTATA GGCAACATGCCTTATACCTGTCTAACTAACTTCCTAACAACTAACAATTCCTAACTAACCCTGCATTCCTATCAAAGACC CATAGCCCTGTAAACAACAACAATCATGTTTATAGCACCTAGTCTGATTCTTTGCTGTGGAATGACATTGATTTGGGTTT TTAAGGAGATGCATACCAGTTTATGTGTAGGTTAGGAAACTCGTTCGAAAATCACGGTGAACTCTAAATCATGGTGGATA TAAGCAATTTCCCTTAGGTTTTGCTCTTGTCCACGATAATTTTGTCCACCGCGAGTTTTCAAACATGCACATATCTCACA TTTTTGGCTTCTCACTTTTTCTCCTTATTTTGCACCCGTTGTTGCTCCACTCAGTTGTTTATAGCCCACTAATATCATAG TGTTTCATTATTAGGGGTGTGCAAAACCCACTTATGAACGACAACCAAATCTTGAACCGAGCCAAATCAAACCATAACAT AACCAAACTGGTAAAACATTTTAATACCTGAATATATTTTTGTTAAAATTTAGTTCAGTAATTCAAACTGCATATAACCA ATTCAGTGAACTGCGTTACGCGTATACCCAAATTTCAAAACACAGAATCAAAATTTATATATAGGAGCCCCAAATCAGTT CATTTCTTCCCGAAAGAAGTCATTGGAAGATATGATACACTTTTATCTTAGATGTCAGGAAATTATATGATTCTACCAAA ATGTCATCTTGTGTCACAACCATTTAAATTTGGCATGACTATGGCTATAGCTTTTGAAAATTTATAGTAGTGTCTTCCAG AAACATGTAGTGAATGAGCTTCAAATTTATAGATATTTCCTTCATTGTAACTTTCTATTTTACTTTTTAATGAGATAAAA AGGCTGTCGTGGCTAAATATCTATTGCAACAAATCAACCATTTTAAATCTTGCTGCCACTGGTTTTAAGATCCTCTGAGG TGCATGGTGCCATTTAAAAAGCAAAATGCAGCATTGATAACCATCGATTTAAAATGCATGGTCTGTAGGATTGTGTTGGG GATCGTTTCGGTGCAGCATTGCTTGCGGTTTAGAGGCTTGGATACGGAAGGTTTGTGTCCTCTCTGTGATTGTGAAGCTG AAACTATTGATCATGCTTTTTTGTCATGCAATCATGTTCAGATGCTTTTGATTGGATCTCTACTTGGCTTACGGTACATG TCTTATTCTGCCACCTCTTTTATGCTTACTTACTGCATTTCATGGCAGATGCGGATGATGATGTTGCTTTATTCTTCAGT TTACTATATTGCATCTAGGAGCATTGAAACAATGTCATTTTTAAGGAGTTGCAGCTTGATGAGTCGCCGTCTCTTCAACG ATCTTCACACTGCATGCTCTTCCTGATTTGTGTTTTGTTTCGTCCATGGCTGCCCCTTTGACGGTTACATGGCAGCAAAC CAGCAACCTTCGGGTGGGAAAATCAAAATTAATTTTGATGTGTCAGTTGTTGAGCATTTGGTTGTGGGGTTTGGTCTCCT TGCCGGTGATCATGAGGGTGAGGTTCTCGCTGCAACTAGCGCTTTCCCCCTCTCGGTGTTGTCTCCTTTGATAGCCGAGG CGTTTTGTTGGGCTCTTTCTTCATATATGACTTCATGTTTTGGATCATTTTGCTTTGAGATAGGCTATTTACAGCTCTAT GAGACTTGGATGAAGACTTAGCCCGGGTCTTCGTATGTTTGCACTTTAGTGAATGATTGTCGTTTACTTGCTTGTTATTT TGATTTTATTGAACCCTCTTTTGTTTGTCCAAGCTGCAATAGTTCTGCGGTTTTTTTTTTTGTGTGGCTGATAAGACATT TTCTTTTCAGAACTTGGTTTGGATTGAGGAGGTCCGCCTTGATCCTCTTACTAGGCATGATGTATTAACCTCTAAACGTG TTTCTCCGATTTAATTAATGAAATTCAGTTAAAAATTAAAAAAAA 

CDS sequence (LotjaGi6g1v0002200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATGCATTATGCAAACAAGGGCTGCTCTTAGAAGCCCATGCTGTTTGTTATGAGATGATTAAAAGAGGTGTTCAGCC TGATGTTATTTCTTACACTATTTTAATGGATGGCTATTGTTTAAAAAGTAAAGTGGACGAGGCAAGAAAATTATTTGATA TGATGATTGAAGCGGGTTTGGTGCCTGATGTTTGGAGTTATAACATCCTGATTCAAGGCTACTGCAAGATTGAAAGAGTC GATGAAGCTATGAATCTATGTGAAGATATGCTCACTAAGAATTTAGTTCCAAACACTGTCACCTACAAATATCTGTTTGA TGGCTTGTGCAGATTTGGGAGACTCCCTGATGCATGGAACTTTCTTACTCGAATGCATTATCGTGGCCATCGACCCCCTG ATCTTACCCCTTACAATATCATATTAGAAACTTTATGCGAACAGCATCTGGATAAGGCAAACAAAATTTTTAATTCCCTC ATCCCTGAACCTAATGTTCAGAGTTACAACATCTTGATTAGTGGTTATTGCAAGAATGGAAGAGTAGATGAAGCTATGAG TATTTATCAAAATATGTGTTTGAGGAATATAGTTCGAGATAGTGAAACCTTCAAGTTGTTGATAAATGCTTTCTGCAAAC GGAAGCAATGTGACAAGGCAATTGCATTATATAAAAATAATCGTGACTTGTGCCCATTCAAAATACTTATGGATGGCTTG CGCAAAAATGGAATGGAGGAGGTAGCACAGAGGGTTTCCCAGCTTTATGGAGCCTGTGATCCAGATGTGGCATTAGTTCG GAATCAATTAGCTCTCTAA 

Protein sequence (LotjaGi6g1v0002200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDALCKQGLLLEAHAVCYEMIKRGVQPDVISYTILMDGYCLKSKVDEARKLFDMMIEAGLVPDVWSYNILIQGYCKIERV DEAMNLCEDMLTKNLVPNTVTYKYLFDGLCRFGRLPDAWNFLTRMHYRGHRPPDLTPYNIILETLCEQHLDKANKIFNSL IPEPNVQSYNILISGYCKNGRVDEAMSIYQNMCLRNIVRDSETFKLLINAFCKRKQCDKAIALYKNNRDLCPFKILMDGL RKNGMEEVAQRVSQLYGACDPDVALVRNQLAL 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 125 125 1.1E-57
TIGRFAM 1 29 29 1.5E-5
Gene3D 1 57 57 2.1E-15
ProSiteProfiles 1 27 27 9.054
PANTHER 1 125 125 1.1E-57
Pfam 23 55 33 4.3E-12
ProSiteProfiles 28 62 35 13.088
TIGRFAM 30 64 35 9.0E-11
SUPERFAMILY 32 256 225 1.31E-7
Gene3D 58 148 91 4.3E-25
PANTHER 61 225 165 1.1E-57
PANTHER 61 225 165 1.1E-57
Pfam 62 111 50 3.5E-17
ProSiteProfiles 63 97 35 12.627
TIGRFAM 66 99 34 8.9E-9
ProSiteProfiles 98 132 35 11.082
Gene3D 149 260 112 7.8E-25
Pfam 164 213 50 2.7E-15
ProSiteProfiles 165 199 35 12.529
TIGRFAM 168 200 33 3.3E-11
ProSiteProfiles 200 230 31 7.75

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0002200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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