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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0004000 |
| Transcript ID | LotjaGi6g1v0004000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyanate hydratase; TAIR: AT3G23490.1 cyanase; Swiss-Prot: sp|B7FKW7|CYNS_MEDTR Cyanate hydratase; TrEMBL-Plants: tr|I3SSK7|I3SSK7_MEDTR Cyanate hydratase; Found in the gene: LotjaGi6g1v0004000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:830807..833853) extracted from Lotus japonicus Gifu genome v1.2.
CGATATATTAATTAAGGTGATAAGGCCTAAGTTTGTACGTATGACAATAATCTCCATTTTACCAGTGTCTGTCACCTACT CTCTCAAGTCAAGATGGAGCTGAACAAAGGAAGCACAGTGGCCCGACTTCAATCTGTGAAGCGTAATTCCGGCAAGTCGT ACAGTGAGTTAGCAGAGGAGACAGGACTCACCAATGTCTATGTTGCCCAGCTTCTGAGGAGACAAGCTCAGCTGAAACCT GACACTGCCCCTAAACTGCAGGCTGCGCTGCCCGACCTGACCGATGAACTTGTTCATGAGATGATGACACCCCCTTTGAG GTCCTATGACCCAAATCTCATCCAAGACCCCACTGTCTACAGGTCCCTCTTCTCAATTTGTCATTAAAATCCTGTTGGAT TATGCTGATCTTCTATTTCATATCATAGGTTGAATGAAGCTGTCATGCATTTTGGGGAGAGCATCAAAGAAATAATCAAT GAGGACTTTGGTGATGGGATGTAAGTTTTCACTTGTATAATGATGAATTAAAAGGCTAAGATTCTAAGCTCAAAATTAAA TTAAGATTCATGTGATAGAGTTATATGGGTCAAGAGAGTTGTAGGGTATCAATCTGGAAAGAAAAAAGTTGATGAATTAG AAAGTGGGCTGGTTATATTCTGAATGTGGTGGCTCTTTTTAGTCTTTTCCTTCCTTCATGCTGAGAAATGCACAAAAGAA GAAATGAGGGCGTTTTGAGTTTTCTGTTTGAAAGATCCCAAAAACTTATTACCTGCAAGGCTGCAACTCTAGACTCTCTC TGTCTTTACTTTCCAACCACTAGTCTATAATAGAACAATAATAAGCTTTATGTTTCTCAGGAAACAAATAGATCATTTTA TGCATGTGCAAATGAACCTATTATGCTGCTAATCAAACTGACTTTGACATTAGATATTTTTTAGATTGACGTTACAGTTG ATAAAAGCATGCCATGCCTAACAAATGGCATAAATCTATTCAAATTATGATCTATAGATACCAACCTGAATCATTTGTTA ATTTCATATTTAGCATGTCAGCAATAGATTTCTTCTGCTCAGTTGACAAAGTTAAAGGAGTAGATGGGAAGGATCGTGTG GTACTGACATTTGATGGGAAATATTTGCCACATACTGAGCAGGTGAGTTGCTTATTTATTTTCTTAATCTGTGAGATTTT GGTGCAATGAACAGTTTACAACAGAAGGAAAATTGCTACATCCTATGGTCATGTTGATTAAGAATATATCATTGTTAATT ATTTGGTATGGGAAGATTGTCATCTTATTCGCTTTACTTTTGTAATAATCCTCAGAAGATTTTCAAAGTAATTAATTACT AAACATTGGATTATTTTTTTCTTTTAAAAGTTTCCCCTTGTCATCTTCCTTGCACCCTACTCAAGGATTATCCTAATTCA AACTTGTCAGTTGTCAGACTCTTAGCGTGGAGATTATAGGACTGGGTAGATTGTTGGACAGTGGTGCATGGCTTAATATC GGAGTTAGGATAACTTCTAAGACTATCTTAGAACTCAACCTAGGTCTAACTCTATCCAAAAAGTTAGCATATGTGTTGTG GATTGCCCAAGCCTTTAAAATCTCTACTCTAGTAGTGTCTTTAGTTGATGTGAGATCTAAGTTCTAAACATTAGAGGGCA ATTATCATCTCATAAGATAGCTCTTGCGGTAAGAGTTCTAAAATGCTATTAGAGCACATCCTAGATCTGATACGATCTTA GAATTTGGATTGATTATTACTCAATCCCAAAAGCTAGTTTGAGGGTGAGGATTGGAACTACGTAGGCCATACCCTAGTTA GTGTAGGACCTCAACAGACCCCTTCACGCCCAGAACTGGACATCTGGAGTGTGAAGGTTGTGGGACTGAACATTTGTTGG TGACCCACCCATCTAATAGCCCAACAACGAATCTAGGATAGTGTCTAATCTATCTTAGAACTCGAGCTTGAGTCTACTAC TATCTAAAAGTTAGCGTGGGGGTGAGGATTGCCATACTATGATACTACTTTAGAATTTGGACTAGGTCTAACTCAACACA AAAAGTTATCTTAGAGGTGAGGATTACCCTACCTTTATGATGACTACTTTGGTCATATCTCTAGTTAGTGTAAAAGCTCA ACACATCTCACAACAGCCCTGGACATTTGGAGCGTGAAATCTACATGACTAAACATCTGCGAGTGATCCATTTATAGGTA TCCCAATATCAGATCTAGGATCTGTACTATTTTGAATTTGGACTAGGGCAAACTCAAACCTTGAGCTAGCTTTTGGGTTG AGTTAGACCTTGCCCAAATTCAAGAAATTCCATACTCATAAGTAATTTTTATTCATTTATCCTATTCAAAAACTATCAGG ATTGTGTGTTTGATTTTAGCTTCCTGAAACTGTTTTTCTTGGGAAGCATTTAATTTTGGACCAAGATTCCATATGAAGGA ATAGTGATGATCTTGTTTTTATAACTCACAGTTGACTCTTGCATACTAATGTTGACTCAGATCCCAATTTATGCACTATG TTTCCTTTCCTTTACCTAAATTTTTATATACGTCTACTATGTAAACAGATAACAGAGAACATGGTTTCAAGAACAAGGCC ACAGGGAAAGCAGTGAGTGTCTTCATGCCAAAAACTTCAACGCCTGTCTTTCTGCGCTTATCATACCTGTACTTTATAAT ACTGCAAGCTGTATTTGATCACTGCTATCCTGTGTTGCCTATAGAAACATGGAATGTAAAAATAAACGAATAAGATTTAA AAACTAAAAGCAGCCAAGCCAACCATGGCCATTTATACTATCGTTTATGGCTTTGGAGATTTCATGTCACTTCCATAAGT TTTAAAGTCAGATGCCTAAGATGAATAAGCTTGTTGGTTCAGTCCAAGCATAATAACATTCATTGTATCCATAGTATTCT GTCCGAATGGAAAGATACCGAATCCTTTTTTTAAGTGTAAGATGCTCAATCTTTGAGATAGAAATATGTTTTTCTTTTAG TTCAAAA
CDS sequence (LotjaGi6g1v0004000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTGAACAAAGGAAGCACAGTGGCCCGACTTCAATCTGTGAAGCGTAATTCCGGCAAGTCGTACAGTGAGTTAGC AGAGGAGACAGGACTCACCAATGTCTATGTTGCCCAGCTTCTGAGGAGACAAGCTCAGCTGAAACCTGACACTGCCCCTA AACTGCAGGCTGCGCTGCCCGACCTGACCGATGAACTTGTTCATGAGATGATGACACCCCCTTTGAGGTCCTATGACCCA AATCTCATCCAAGACCCCACTGTCTACAGGTTGAATGAAGCTGTCATGCATTTTGGGGAGAGCATCAAAGAAATAATCAA TGAGGACTTTGGTGATGGGATCATGTCAGCAATAGATTTCTTCTGCTCAGTTGACAAAGTTAAAGGAGTAGATGGGAAGG ATCGTGTGGTACTGACATTTGATGGGAAATATTTGCCACATACTGAGCAGATAACAGAGAACATGGTTTCAAGAACAAGG CCACAGGGAAAGCAGTGA
Protein sequence (LotjaGi6g1v0004000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELNKGSTVARLQSVKRNSGKSYSELAEETGLTNVYVAQLLRRQAQLKPDTAPKLQAALPDLTDELVHEMMTPPLRSYDP NLIQDPTVYRLNEAVMHFGESIKEIINEDFGDGIMSAIDFFCSVDKVKGVDGKDRVVLTFDGKYLPHTEQITENMVSRTR PQGKQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Hamap | 1 | 164 | 164 | 53.586 | ||
| PIRSF | 1 | 150 | 150 | 1.9E-62 | ||
| Gene3D | 2 | 81 | 80 | 6.5E-13 | ||
| PANTHER | 4 | 160 | 157 | 1.2E-79 | ||
| SUPERFAMILY | 9 | 80 | 72 | 6.75E-12 | ||
| CDD | 11 | 66 | 56 | 4.2051E-4 | ||
| TIGRFAM | 12 | 147 | 136 | 3.8E-35 | ||
| PRINTS | 16 | 31 | 16 | 1.9E-36 | ||
| PRINTS | 36 | 53 | 18 | 1.9E-36 | ||
| SMART | 77 | 150 | 74 | 2.7E-41 | ||
| Pfam | 82 | 148 | 67 | 6.7E-30 | ||
| Gene3D | 84 | 149 | 66 | 9.1E-30 | ||
| SUPERFAMILY | 84 | 149 | 66 | 9.94E-28 | ||
| CDD | 84 | 150 | 67 | 1.47947E-36 | ||
| PRINTS | 85 | 99 | 15 | 1.9E-36 | ||
| PRINTS | 103 | 119 | 17 | 1.9E-36 | ||
| PRINTS | 135 | 145 | 11 | 1.9E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Cyanate hydratase activity | Catalysis of the reaction: cyanate + H2O = carbamate. | ||
| Biological process | Cyanate metabolic process | The chemical reactions and pathways involving cyanate, NCO-, the anion of cyanic acid. |
Expression pattern of LotjaGi6g1v0004000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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