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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0005400 |
| Transcript ID | LotjaGi6g1v0005400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB family protein; TAIR: AT3G23250.1 myb domain protein 15; Swiss-Prot: sp|Q9SJX8|MYB14_ARATH Transcription factor MYB14; TrEMBL-Plants: tr|I3T8D9|I3T8D9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0005400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1122838..1125445) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTATTCCGGGAAACAGCTAAAGCCTGAGTGGTTTGAATACTCAAACTATTATTGTCGTGGACCATTCTTGCTCATCT TAGTGGCTGCGGAAAATTCGAGGATAAAAAGCCTTGGAAATTGAGGTTGATTAATCTCATTTGTATCTAGAGAGAGAGCA ACAACGTAGCTAGAGTACGTGAGACCAGCTCCAGAATATTATCATTGTACACATCGATTCTCCATCAATTTGAAGATGGT GAGAGCTCCTTGCTGTGAAAAGATTGGACTGAAGAAAGGTCCTTGGACCTCAGAGGAGGATCAAATTCTCATATCCTACA TCCAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAGCATGCTGGTATAATTTTGTGAATTACTTTAAGCCTTTGT GTATGTGATAGAGAAGCCAAATCTCCAATACTGTACTTCTAATATTTGTTTGGAGAAGTCCTGTTATTAACTTAAAATAT CACCAAATAAGTCTTTATGAATGACAAACCATGCAATCCTCACCCTTGATTCAGTTTTCGAGTAGAGTTAGTTCTAACGT AAATTTTTTTTGATCAAACACTTCGTGCATGTTTGAAAACTACAGTTATGATTTTGGTTTCATCGTGATTTTCGAATAAG TTAAAGTTAGTTAATGATAATTGAGATTCTACGCTTATTGTATATTTGAGCTAATTTTGTTTGGTTTGGTTTCTTGATCA TTTCCTCAGGGCTATTAAGATGTGGAAAGAGCTGCAGACTACGGTGGATTAACTATTTAAGGCCTGATATCAAGAGAGGA AATTTCACAGCTGAAGAAGAGGAATTAATCATTAAGATGCATGAGTTGCTAGGGAACAGGTAATATTATACAAATCCTAC AATGAATGCAACCAAAGTTTATTTTCTTAATCACTTTAACCAAGAAGATAAACTAATCTTGTGCAAATATCTCACAAAAT TCAAATATTTGATCCTTGTTTTTCAGGTGGTCAGCAATTGCAGCAAAATTACCTAATAGAACTGACAATGAAATAAAAAA TGTGTGGCACACCCACTTGAAGAAAAGGCTACAGAAAACAAACAACCAATCCAATTCAGATAGAAAAAGAGTTTCCAAAC CAAAAATCAAACGATCTGATTCCAGTTCCAGCACACTAACTTCATCCAGTGATTTTTCGTCATCAGTCAATGAAGGAGTA GAAATTATGGATAACAGCATCAAGAGTGAGGAGGACATAGAATCTCTGGAGACAATAATGCCTGTAATTGATGAAAGCTT TTGGTCAGAGGAAGCAATGGATGATGAAAGCTCCACCATGCCATCAAATTCTTTGACAGTGTCAAATGAATTACAACCTC AATGTTCAGTTAATTCAGTGGAAACCTTCCAAGTACAGAGTAATGGTTCAAAAATTGATGATGGTATGGATTTCTGGTAT GACTTGTACATCAGATCAGGGGAATCAACAGAATTGCCAGAGTTGTGAATTTTTCATAAATCACAATAGTTCCATTAAAA TTGGACGGCTCAAATTTTAATCTTATCTTTATGTGAACCCAAATCCATTTTAAACTTTGCAAATAACAATTGTTTTAAAT AATTATCTGCATTGAATCTTACCATTACAACACATCTAAAGGGGTACATTAGTCATTAGTGTATATAGCTCCAAGAGCAA AGGGCATCATTCATTGGCAAAGAAACTAAGCTATGTACATTGGCAAAGGTTTATGTTAGATTTTTTTCTTATAAGCAAAA TATCATTAAACGAGACCATAAGGGTGCCACAACCCACAATATAATAGAGAAATCAATTCAAAGAAAAAATCCAACAAACA GAGAACGAAGTCAAGCAAAAAGAGAGATGAATACCCTTGCTAACTATTCTTTACACTCTCACTTTTCAATATTTTCATAT TAAACCCCGTTAGCTCAGTAAATCTAAATTTTTAACTAGCGGTAAATTTGACACCTACTAGAGTTTCATTAAGTCATTAT CTCATGAATCCGGATCCCCTGCAGCATAAAATCTGTCATTTTTAACTGTATTTCATCCAAACAAGTCATAAGAAGTTGGA AACCCTCATCTCTTTATCGTTGTTGTCATTGTCATTTTCGTTGTCGACAATGTTAGAAAATAACACAACTGAAGAAATTA ACATGAGCAGAATGTAGGACTAGAGTCTAATATACTCGTTCTCACAAAACAAATATTTAGACTAAGTCAAATATAAGCTT AAAGTGCTACGGACCGGTACATCTAAAAATGAAGAACTAGAGTCAAATATATAGCCTTGGCCTCCCCCTTACTTCACCGC ACTAAGAAATGTAGGACTTCTCCAATAACCTATTTTTGACTTTCTTTATTTAAGATATTGGGCAGTGTGGGATTTGCTCC ACCATTACAATCAACCCTAACATTCTCCACCTTGATTGTAAGTCCCATCTGATCCTAGTTCTTTCAGCTCTATTGGCAGA AGCGAGCGGTTTGAGGTGGACTTTACGGCTGGCGAGAGAGCTTGGTTTCCGTCGTGTCTGTTTAGTGACGGGTTGTCTTT AGTTATATCAGTGGTGGCTGAACGGTACTGTGGGGAAATCTTACTTGG
CDS sequence (LotjaGi6g1v0005400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAGAGCTCCTTGCTGTGAAAAGATTGGACTGAAGAAAGGTCCTTGGACCTCAGAGGAGGATCAAATTCTCATATC CTACATCCAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAGCATGCTGGGCTATTAAGATGTGGAAAGAGCTGCA GACTACGGTGGATTAACTATTTAAGGCCTGATATCAAGAGAGGAAATTTCACAGCTGAAGAAGAGGAATTAATCATTAAG ATGCATGAGTTGCTAGGGAACAGGTGGTCAGCAATTGCAGCAAAATTACCTAATAGAACTGACAATGAAATAAAAAATGT GTGGCACACCCACTTGAAGAAAAGGCTACAGAAAACAAACAACCAATCCAATTCAGATAGAAAAAGAGTTTCCAAACCAA AAATCAAACGATCTGATTCCAGTTCCAGCACACTAACTTCATCCAGTGATTTTTCGTCATCAGTCAATGAAGGAGTAGAA ATTATGGATAACAGCATCAAGAGTGAGGAGGACATAGAATCTCTGGAGACAATAATGCCTGTAATTGATGAAAGCTTTTG GTCAGAGGAAGCAATGGATGATGAAAGCTCCACCATGCCATCAAATTCTTTGACAGTGTCAAATGAATTACAACCTCAAT GTTCAGTTAATTCAGTGGAAACCTTCCAAGTACAGAGTAATGGTTCAAAAATTGATGATGGTATGGATTTCTGGTATGAC TTGTACATCAGATCAGGGGAATCAACAGAATTGCCAGAGTTGTGA
Protein sequence (LotjaGi6g1v0005400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRAPCCEKIGLKKGPWTSEEDQILISYIQKHGHGNWRALPKHAGLLRCGKSCRLRWINYLRPDIKRGNFTAEEEELIIK MHELLGNRWSAIAAKLPNRTDNEIKNVWHTHLKKRLQKTNNQSNSDRKRVSKPKIKRSDSSSSTLTSSSDFSSSVNEGVE IMDNSIKSEEDIESLETIMPVIDESFWSEEAMDDESSTMPSNSLTVSNELQPQCSVNSVETFQVQSNGSKIDDGMDFWYD LYIRSGESTELPEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 220 | 220 | 2.2E-102 | – | |
| PANTHER | 1 | 220 | 220 | 2.2E-102 | ||
| ProSiteProfiles | 9 | 61 | 53 | 17.889 | ||
| SUPERFAMILY | 11 | 108 | 98 | 1.2E-31 | ||
| Gene3D | 11 | 67 | 57 | 1.7E-21 | – | |
| SMART | 13 | 63 | 51 | 2.4E-15 | ||
| Pfam | 14 | 61 | 48 | 4.0E-16 | ||
| CDD | 16 | 61 | 46 | 1.51073E-11 | ||
| ProSiteProfiles | 62 | 116 | 55 | 26.053 | ||
| SMART | 66 | 114 | 49 | 6.2E-16 | ||
| Pfam | 67 | 112 | 46 | 4.0E-15 | ||
| Gene3D | 68 | 148 | 81 | 4.3E-21 | – | |
| CDD | 69 | 112 | 44 | 4.39158E-11 | ||
| MobiDBLite | 112 | 156 | 45 | - | – | |
| MobiDBLite | 120 | 136 | 17 | - | – | |
| MobiDBLite | 137 | 156 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0005400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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