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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0006300 |
| Transcript ID | LotjaGi6g1v0006300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CASP-like protein; TAIR: AT3G23200.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q8L7R5|CSPLG_ARATH CASP-like protein 5B3; TrEMBL-Plants: tr|I3S4F7|I3S4F7_LOTJA CASP-like protein; Found in the gene: LotjaGi6g1v0006300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1274686..1278417) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAACTGATCCAATACCCTTGGGAATTACGTATTAGTTGTTCACTTCATTCCCTTGATCATCGCTTCATGATCATCT CTCGAGTGTGAGACTCTCTTCCTGTCACTCTATTTTGTATGTTAAAGGTTATTCCTTTCGTTCTTTGATGATTTGTTCTG TCACTTGTGCGCATTTCAGACCATTGGGTGTCCATTTTCAGCTGTTAATTTTGTGAGGATCGTTTTGATTTGGGGTAGAA AGATGAGGAATTTTCCAGGGACACCCGGCACTTTTCTTGGGTTGTTTCTTCGGATGGCACAGTTCACTTTTGCTGCTGGG TCTGTTGCTTCCATGATTACCACAACTAGGTTCTTTAATTTGACTGCTTTTTGGTAATTTCTCAATCATATTATATTCAT TCATATATTATCTTAGCAAATTGTTTGTGATTGATTCACCTTCATATCTTGATTCTATATACATTTAAGTGAAATTAAAT TACCCTCTTTTACCACATTTTCTATAACATTTGTAACAATCTGTTTACATCTAGTCCTGTGCTTGAAGCAAATTGTTCGT AACTTCAACCATTAATATATCTATTTCCTCTGTTAAATGGTTCACTTCTTCCACCTTAGAGGGTATGGTAGTACCTTTTG AGTCAACCAGGAAGATTCTACCATACAGAGATTTGAATGGTGTCGTTTTGGAAGATATATTGTTACTGGCATTGAACCCA AATTCTGCCCAAGTTAAGAGGTCATTTATTCAGTTCAGACCCCAATCCCATGAGACATCTCAGATAGTTTTCTAATCAAT GATTTAGAACCTCCGTCTGACCATTCAGTTTGAGATGATTGGTTGTGGTATAATTCAATCTTCTACCTGCCTGTTTGATC TTTGATGAATTTCAAGCTCCTCTTTGTCCTCCTATTATTGGAAGCCATTGATGAAATGCTTCCCCCCTCCTGTTCTTGCT GAAACTTTGGTTTGTATAGAACCCTCAACTCTTCCCCATACAGCATTACAGGCATTAGCTACTGGCCGATTCTTCTCTTC AACCTTCTTGATCATTGTAGTCAATTTTTTCGGTTTATACAATTGAACCTCTAAAGCTACTTCCTCCTTTAACCCTTTCA AGAACACATCTAAACAGTAATCTAACTCTAATCCTTGAATCATACTTACATAAATTTCAAATTCTTCTATGTATTCACCC TACCTGCCCTCTTTGTTTCGTCCCTAGCGAAATGGCAAATGGGCTCTGCGAAGAAGTAGGATAAAACCTTTCTAATACTG CATTCCTGAATTCTTTCCACATAAAAATCGGATTGCCCGCTTCCCATCTGTAGAACTAGCTCAAAGCCCGGCCCTCTAAT GCCACCATAACATCATCCTCCCCGGAATAAACTGGTAGCTCCATAATTTCAGATTCTCTTCCGCTTAAACTCCTACACTC CCTTTTCATTTCAACGAGATTCCTATGGATTGATTCCTCTGGCTCAAACCTTGGTTGAGATTAGCATCCATGATCCATGT GCTGCCAAATACTTTCCACCATTGTGTCTAGCCAATTTAACATTTCACTATCTGCTTCTTGATTGCGACTTACAATTTCC AGCTTGCGTTCCATAGTTTCTAGCGTTCCCTATATTGTTTTACATACCATCAACACTAATCTCTCTCCCACAGACTCCAG AAGGAGCTCAAACACCAGTTCCGTAGAACTGGTTGACACACAAGAAGAAAATTGTATATATTGCTATAGAATTCCCTTCA CTTACCCAATGTGATTAAGCGTAAGAAAGAATAATACAAAGAATTTTGTTGGATAATTTGAGATTTCTAACACCTCTCCC ACTTTACACATTCCAAAACAAATGACACCCTCCAAAATTCCTTCCCATGATATTTAACTGCCTTAGCAGTCACAGCTAAC TCTTGATGCTGCCCATTATTCCAATGGGCCCTAACTAACTCTAACTATTACAGTTATTCTGGCGGTTTCCAGCTGTACCT CGACTCTCTCTCGACTTCCATGTTTTTCTCTCGGGTAGACTTGGGTTATTTGAGGTTAACCACGTAAGTTTCTTTGTTTA GATCTCACTCTCTATCTCTTATTTAAATTTTAGTTCTAATTTTTAAACAACCCAACATTACATCCACCTCCCCTTTTTTT TTCTTTCTCTCTATCACTTATTTCTCTTCTCTTCTTTTCTTTTCTAACTATTAATTAGGGTGTTTCTAACCATTATTGAT TTTTAATTTCTTCTTTCATACTACTCAAATCTTCTTCTTTTTAAAAATAAACTGACTGTATGTTTCAATGCTTGAATTAA TGAAACAAACTGAAAATGTTTATATGCAATTTAGCACTTCATGCATAAGGAGACTGATCTGACATAATAATACTGAATAA AGTGACTGCAGCTAGGTATGGAACTAGGATTTTAGTCTAGATGAAGAAGGGTGCTTGTAAAGGATGGATGTCTTTAGTAA AATCTCAATGGGATGTGATCGATAGGATCAGAAATAGAAATAAGAGAGAAAGGGGGAAGATGAAGAAGAACAGAGAGAGA TGGGAGAAAATATAGAGAGAAAAGTATTACTGATATCATTCAACATTATTGAACATCCATCTATTGAGTCACAATGAGAC TTATATAGCCAACTAGAGTTAGTCACATCCAACAGACTCTATTGGAAAAGCATGCATATCAGTGATATACCCCCAGAACT ATGAACTTTTTTATTTCTATTCAAAACTATGTTCATGCTTTTCCCTGACTTAGAATGAAACATGTTTCTCATGAAGTGCT TTGCTTCTCATTTTCATCTGTACTTCACTACCGCTCCTTGGATGTTGGATGTAGAATAACTCAATGTTAGCTGTTCCATT GGTATTGCAGTCACCTGATTACTTTAATGGGTTTACAATTCATTTGGAGTTTTACGCTTGCATTAGTGGATGCATATGCT TTGGTGAAAAAGATTTTCCCCTTTAACCCTATACTGGTTTGCCGCATTGCAGTTGGAGACTGGGTTAGTCTCTGAGTAAA TCTTTCCTCTTCTTCATTGGTTTGTTGCATCCAGCAGGGCTTGTTCATTATGACGTTTATCAATTAACAAGTTCACTTCT TGACCATGATTCCACAGGTAACAGCAATACTATCTCTATCTGCAGCTTCTGCCTCAGCTGCCATTACAGTTTTGTACTTC CATGATGTGGGACACTGCCATTTAGGACATGAGTGTCATAAGTACCAGATTTCTGTTGCTTTGGCGTTCATGAGCTGGAT ATCAACTTCTATATCTGCTCTAATTATGCTTTGGCTTGTAGCATCAGAGTAGCTGCCTCTATTCACCAATTCTCACCGCC AAAGTTCATTGAATATCCTTTTGATGTGTAAATAGCAAAGTATATAGAGCAGAGCTTTGCATTCAAATGTAAATTTCATT TCTTCATTTCAACTAGAATTGGGATAGCTGCAGATTGCACAAAGTCACTAACAATTAAAGATGAACATGCAGAGGAAGAA TTCAGGAATAAAACTCCTTAGCAACTATACTCGAGCACTTGTTAATTTTTACATTTTGAGAGAAAAACTCCTCAAATAAT GGTTTAATTCAGGTACAAGGATGGCATAACGATGTTATTCTCTGATTTATTATTATACACCGTTCGGATGTGTTTGAGAA GTGGAGGGAAGAAATTTAAAATCTTTATCATGTTTAATTAGGAAAAGTGGAG
CDS sequence (LotjaGi6g1v0006300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAATTTTCCAGGGACACCCGGCACTTTTCTTGGGTTGTTTCTTCGGATGGCACAGTTCACTTTTGCTGCTGGGTC TGTTGCTTCCATGATTACCACAACTAGGTTCTTTAATTTGACTGCTTTTTGTCACCTGATTACTTTAATGGGTTTACAAT TCATTTGGAGTTTTACGCTTGCATTAGTGGATGCATATGCTTTGGTGAAAAAGATTTTCCCCTTTAACCCTATACTGGTT TGCCGCATTGCAGTTGGAGACTGGGTAACAGCAATACTATCTCTATCTGCAGCTTCTGCCTCAGCTGCCATTACAGTTTT GTACTTCCATGATGTGGGACACTGCCATTTAGGACATGAGTGTCATAAGTACCAGATTTCTGTTGCTTTGGCGTTCATGA GCTGGATATCAACTTCTATATCTGCTCTAATTATGCTTTGGCTTGTAGCATCAGAGTAG
Protein sequence (LotjaGi6g1v0006300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRNFPGTPGTFLGLFLRMAQFTFAAGSVASMITTTRFFNLTAFCHLITLMGLQFIWSFTLALVDAYALVKKIFPFNPILV CRIAVGDWVTAILSLSAASASAAITVLYFHDVGHCHLGHECHKYQISVALAFMSWISTSISALIMLWLVASE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 151 | 151 | 4.2E-68 | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 151 | 151 | 4.2E-68 | – | |
| Phobius | 6 | 16 | 11 | - | – | |
| Pfam | 8 | 136 | 129 | 4.0E-22 | ||
| TMHMM | 13 | 32 | 20 | - | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| Phobius | 25 | 39 | 15 | - | – | |
| Phobius | 40 | 67 | 28 | - | – | |
| TMHMM | 47 | 69 | 23 | - | – | |
| Phobius | 68 | 87 | 20 | - | – | |
| Phobius | 88 | 109 | 22 | - | – | |
| TMHMM | 89 | 108 | 20 | - | – | |
| Phobius | 110 | 128 | 19 | - | – | |
| TMHMM | 128 | 150 | 23 | - | – | |
| Phobius | 129 | 150 | 22 | - | – | |
| Phobius | 151 | 152 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0006300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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