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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0008300 |
| Transcript ID | LotjaGi6g1v0008300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Acid phosphatase 1; TAIR: AT1G04040.1 HAD superfamily, subfamily IIIB acid phosphatase; Swiss-Prot: sp|P27061|PPA1_SOLLC Acid phosphatase 1; TrEMBL-Plants: tr|A0A0B2QYK4|A0A0B2QYK4_GLYSO Acid phosphatase 1; Found in the gene: LotjaGi6g1v0008300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1600270..1603218) extracted from Lotus japonicus Gifu genome v1.2.
GCCACGTCTCCCCCTTATAATTGACATTTCTCTTACAAGTTTTAGTATTTATTTTGCCAGTAATGGCAGCATGTGATTAC GGTGCAGGTCAAGGTTTATGGCTGGCAACAACATTCTATCAAACCCATGTGACTCATCTTATTATTATTCATTATCAAAC AAATCATTACACACATAACAAAGGAGTAGTTGGATACATTACTTCCTATATTTTGCACATCTAGGACCTTGTCCTTTTGT CTTGAGAAAATGGGGAAAGCACTTTGCTGCTGCTTGCTTATCACATGCCTAATGATTCCTTTAGCTGTTGCAGATTGGAA CATTTTGAAGCTGCAAACTAAAGATGGATTGAAGATCAGCTTGAAGAACTATTGTGAAAGTTGGAGAATGAATGTGGAGC TGCACAACATTAGAGACTTTGAAGTTGTGCCTGAAGAATGCATTGAATACATTGGGAAATATGTCAAGTCCACACAATAC AGAGTGGACTCACAGAGAGCAACTGATGAAGGCTTGGTTTACCTTAGCACCAGATGCAACTTGAACAAAGATGGAAGAGA TGCTTGGAATTTTGACATTGATGACACTCTGCTTTCAATAGTTCCTTACTACAAGAAAAATTTATATGGGTAATTCAGAA ATTCACTTTTCATATATTTTATGCAGATAAGTTATTATTCTGTTGTAATTGCTAATAGCTTGAATTGGAATCTTCTCTCT CGAAACTATGTTTGTCATCAATAAAATTTTGACATTTCAATTAAAAACATCCATGCAAGTTTGTAATTGTTTCTCCCATG TTTTTTCAATGACATGACAAGATTTTATTGGTGGAACAAAATATAGACACTATTTAGAGATAGAAAGTCTTGATTCACTA CTGATTGATGGTTCTTAATCTTTTTCCCTTGATCTACTTGTGGTTACTAATTAATGACCATTATAAATTAGGCTTAAATA CTCTATAGGTCCCTGAAATTGTGCCCCGTACGAAAATAAGTCCCTGAAAACTTTTTTTCCGATTCCGGATCCCTGAAATT GTTTTTTTAATCAGAATAAGTCCCTACCCATGTTATGTGCTTATGTGGCTCTTATTTTGCACAATCATCATTTCCATGTG GATTTTTTAATTTTCTTTTGTTACACATGTGTTAATCAATTATAATTAACAAATAAATCTTAAAATTAAACCCTAAATCA ATTAATTCCTAATCCCTAATCCCAAACAAATAAATCAGAAGAAAACAAATTATTATTCACTATGTAATTCTTATTCATCT TCATCATGAATTAATTTTCATCTTCATCATCTTCATCACCTTCAACCTCTTCATCTTCATCATTCATCCACCCCCACCCT GAACCCCACTGCAAAAACCTCATCGCAACCCACCCCCAACCACCAAAATCCCAAAAACCAACCCCCACCCCCAAAAACCC AGAAATCTAGTTTCTCCCTCTCCCCCTGCATCTCCCCTAATCCAGAAACCCAACAATCCAACAACACCAGCCCCCTCTCT CCCTTCATCCACAACCAACATGAACACCAACAACAACATGAAAATCAACCCACAGCCAACCCACAACCTTCACCAACAGC AACAACAATGTAACAAAACCCACAATGAGAGTGAGAAGAAAAAGCTGCGATAACCCAACTCTATGAAGCTAGAAAGATCA GGACCCAGAAATCGATCTAGAACCAACCCCCACCCCCAAAAACCCAGAATCGAACTAGAACACGAAAGAGGCGAAGTAGA AGAGATTGAGACAGGAGACAAAGGGCCAGTGGCACCACCGAGCCACCACCGCACATATTGGCGGCCGCCGTCGCGAAGAA GCTAGGGGTTCTCAAACCTGAAGCTCCCTTCCTTCACCTTCTACCTCTACTTCTCTTTCTCCTTCTTCGACTTTCCTTTC CTTCTCTTAGGTTGAGTTCTGATTATATTAGATTTGGGAATTTAGGGATTTATGATTAGTGGGTTTAATTAGATTTAGGT TAATTAGGTAAATAATTTTTTATATTTAAATTTAATAGTTTTTTTATCCCATGTGTATTTAAAAATAAAAGAAAAAGCCA CGTGTAAATATTGAGTCAGCAAAAAATATGCCAGATAGGCTTAAACCACGAGCAGGGACTTATTCTGATTAAAAAAACAA TTTCAGGGATCTGGAATCGGAAAAAAATTTTTCAGGGACTTATTTTCGTACGGGGCACAATTTCAGGGACCCTTAGAGTA TTTAAGCCTATAAATTATGATGGTTTTGTTAATAGTGGAAAGAAATTGAATGTGACATCTTTGGAAGAATGGATGAGCAA AGGTAAAGCACCTGCTCTTGATCACTCATTGAAGCTCTTCAATGAACTTAAGTCCAGAGGTGTTCAGATTATTTTGGTTA CTGCAAGGAAGGAGTATCTTAGATCAGCCACAATTGACAACCTAGTTAAGGTTGGTTATTATGGGTGGGCTAGAATTATC TTCAGGTAAGTACATTTTATCCTTTTTTTATCTTTCACTACTACTAGCATATTTGGACCAGTCTCTCTTTTCTTAAAATC AATTCTCAAATTCCAAAACTAGATGAAGATTTCTCTCTAAAATTAATTGACTCCATAACACACGTCACAGCCTAATTTTA TAGCTAATTTTCCTGTGCAGAGATCCAGCTAATGAATTGGTATCAGTGAAGAAGTACAAGTCTGATGTGAGAAAACAATT AATGAATGATGGTTACCGCATTTGGGGCATTGTTGGGGACCAATACAGCAGTTTTGAGGGGATTCCTAGTGCGGGAAGGG CATTTAAACTCCCAAATCCAATCTACTATGTTGCCTAATGTGTCATGCATTGTGATTGCATTTTTTCACCACAAATTTAT ACTTATTATACTCTTGTGTAATGAAAACATTGTGAATTAAATAAAAAGACTGTCTGAACTCAATTTTCT
CDS sequence (LotjaGi6g1v0008300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAAGCACTTTGCTGCTGCTTGCTTATCACATGCCTAATGATTCCTTTAGCTGTTGCAGATTGGAACATTTTGAA GCTGCAAACTAAAGATGGATTGAAGATCAGCTTGAAGAACTATTGTGAAAGTTGGAGAATGAATGTGGAGCTGCACAACA TTAGAGACTTTGAAGTTGTGCCTGAAGAATGCATTGAATACATTGGGAAATATGTCAAGTCCACACAATACAGAGTGGAC TCACAGAGAGCAACTGATGAAGGCTTGGTTTACCTTAGCACCAGATGCAACTTGAACAAAGATGGAAGAGATGCTTGGAA TTTTGACATTGATGACACTCTGCTTTCAATAGTTCCTTACTACAAGAAAAATTTATATGGTGGAAAGAAATTGAATGTGA CATCTTTGGAAGAATGGATGAGCAAAGGTAAAGCACCTGCTCTTGATCACTCATTGAAGCTCTTCAATGAACTTAAGTCC AGAGGTGTTCAGATTATTTTGGTTACTGCAAGGAAGGAGTATCTTAGATCAGCCACAATTGACAACCTAGTTAAGGTTGG TTATTATGGGTGGGCTAGAATTATCTTCAGAGATCCAGCTAATGAATTGGTATCAGTGAAGAAGTACAAGTCTGATGTGA GAAAACAATTAATGAATGATGGTTACCGCATTTGGGGCATTGTTGGGGACCAATACAGCAGTTTTGAGGGGATTCCTAGT GCGGGAAGGGCATTTAAACTCCCAAATCCAATCTACTATGTTGCCTAA
Protein sequence (LotjaGi6g1v0008300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKALCCCLLITCLMIPLAVADWNILKLQTKDGLKISLKNYCESWRMNVELHNIRDFEVVPEECIEYIGKYVKSTQYRVD SQRATDEGLVYLSTRCNLNKDGRDAWNFDIDDTLLSIVPYYKKNLYGGKKLNVTSLEEWMSKGKAPALDHSLKLFNELKS RGVQIILVTARKEYLRSATIDNLVKVGYYGWARIIFRDPANELVSVKKYKSDVRKQLMNDGYRIWGIVGDQYSSFEGIPS AGRAFKLPNPIYYVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| PANTHER | 1 | 255 | 255 | 5.8E-133 | – | |
| PANTHER | 1 | 255 | 255 | 5.8E-133 | – | |
| SignalP_GRAM_NEGATIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| PIRSF | 3 | 255 | 253 | 1.2E-85 | ||
| Phobius | 4 | 14 | 11 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 15 | 21 | 7 | - | – | |
| Phobius | 22 | 255 | 234 | - | – | |
| TIGRFAM | 35 | 255 | 221 | 6.7E-86 | ||
| Gene3D | 37 | 255 | 219 | 1.3E-68 | ||
| Pfam | 37 | 254 | 218 | 9.1E-62 | ||
| CDD | 70 | 254 | 185 | 2.04466E-79 | – | |
| SUPERFAMILY | 84 | 252 | 169 | 1.41E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Acid phosphatase activity | Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum. |
Expression pattern of LotjaGi6g1v0008300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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