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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0009600 |
| Transcript ID | LotjaGi6g1v0009600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT4G13480.1 myb domain protein 79; Swiss-Prot: sp|P81391|MYB05_ANTMA Myb-related protein 305; TrEMBL-Plants: tr|A0A0R0HSY1|A0A0R0HSY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0009600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1789621..1791424) extracted from Lotus japonicus Gifu genome v1.2.
TCAAAGTTGGGGGCACATCCTGCATGTATAAATATGCATCAAACACAAGCCAGTTCCCCATGAACAAAAGAAAAAAGACA AATTTTTCTAGCAAGAACTTTGAAGTCTTTTTGCATGTATTGGGGTGGAGTTATGACTGGTCACATGGGTAGGGGTTTCA CAGAAGAATTATGGAGGAAGGGACCATGGACTGCTGAAGAGGACAGGTTGCTAATTGAGTATGTTAGGCTGCATGGTGAA GGCAGATGGAACTCTGTTTCTAGGCTTGCAGGTCACAACCAATTTTTTTTACTTCTTTTTTCTAAATATCAGTGGATTTC ACTTTACAAGTGAAAATCCAACTATATTAAGCGCACTCTTTCAAATTTTTCTACAATTGATTCTGAAATCAGGATTAGTT CTTAATAGAAGCTTCTCGGAGTAATTATTTTTGTTTCAAAATTGATTCTGAAAAAAAAGAAAACTGATTCAAACATCTTA TAGTCCAAGTAGTAAAATTGCTTCCATCATCTACATTCTACTCTTCAAAGTGGCTACAATTATAGCACTTTTGGATCAAC TTTTTTCTTTCTTCTAAATCAGTTCAGACACTCCAAAATTACTTACAGAATGCTTCTTCTTAGAATTGATTTTTATTTTA GAATCTAACAGTAGAATGACTTCTAGGCATGCACAATACCAGAAAAGAAAAGGGCTACATTCATGTTATCATGTACCTTA TTGGTTCTTACTATTAACAGGGTTGAAAAGAAATGGGAAGAGTTGCAGATTGAGATGGGTGAATTATCTGAGACCAGACC TCAAGAGGGGTCAGATAACACCACAAGAAGAGAGCATAATTCTAGAGTTGCATGCTAGATGGGGAAACAGGTAAAAAATT TAATTCCCACCCTCTTGATTTTCTGTAATTGGAAACAGGTTGTTATATCAAGGTCTTGACATATAAATAAAAATATTTAC AGGTGGTCAACAATTGCAAGAAGCTTGCCAGGGAGAACTGACAATGAGATAAAGAATTACTGGAGGACCCATTTCAAGAA AAAGGCAAAAAGTCCCTCTGATGCTGCTGAAAAGGCAAGAAACAGACTCCTAAGGAAGCAGCAATTTCACCAGCAACAAC AACAACAACAACAACAGTTGCTTCAGCAGCAGCAGATGCAACAGCAGCAACAACAGCAACAGCAAATGCAATTCAACTTG GACCTGAAAGGGATCATGGCCTTGCTTGAGGAAAACAACAGCCAAAGAGTCCCTTATATATCTCAGGCAATTAGACAAGA TATGGTGAACATGTGTCCAAACACCACAGAAGAGCAAGGATACTTGTACTCCTCTGCAGTACCAGAGGCCTCAGCAGAAG AAATTTTATGGGATGGGCTGTGGAACATGGATGAAGCTCATGGCAATCTCAGTGTAGCAAACAAAGCTGGTCTATACAAT TTAGTTGCTCCCTTCTGTTGATGTTTTCAGTTAAGAAAACTACTCCTAATCTATCAGCATGTTTGAATCCGCTTCTCTTT CATCAGAATGAGTTCAAGCACTCAGAAGCACCACTCACTTCACGTTTTCCCCAGAATTTATTTTGGTTTTAGCACCAGGT GTTGAAGAATTTCCAAACATGTACTAAGTTCTTAGATTCATAATAAGGCTCCATAAACCAGGAGCTTTAGATCAATTGTA GCATAAGGTGTGTACTTTAGTTAGTAAATGATTTTCTGAAGGCAAATATATTATGTAACATGTCAATAATAAAGTGTCTC AATTTTGGTTTATGAAATTGAATATTAAGATATTTAAATTGTGC
CDS sequence (LotjaGi6g1v0009600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATTGGGGTGGAGTTATGACTGGTCACATGGGTAGGGGTTTCACAGAAGAATTATGGAGGAAGGGACCATGGACTGC TGAAGAGGACAGGTTGCTAATTGAGTATGTTAGGCTGCATGGTGAAGGCAGATGGAACTCTGTTTCTAGGCTTGCAGGGT TGAAAAGAAATGGGAAGAGTTGCAGATTGAGATGGGTGAATTATCTGAGACCAGACCTCAAGAGGGGTCAGATAACACCA CAAGAAGAGAGCATAATTCTAGAGTTGCATGCTAGATGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGGAG AACTGACAATGAGATAAAGAATTACTGGAGGACCCATTTCAAGAAAAAGGCAAAAAGTCCCTCTGATGCTGCTGAAAAGG CAAGAAACAGACTCCTAAGGAAGCAGCAATTTCACCAGCAACAACAACAACAACAACAACAGTTGCTTCAGCAGCAGCAG ATGCAACAGCAGCAACAACAGCAACAGCAAATGCAATTCAACTTGGACCTGAAAGGGATCATGGCCTTGCTTGAGGAAAA CAACAGCCAAAGAGTCCCTTATATATCTCAGGCAATTAGACAAGATATGGTGAACATGTGTCCAAACACCACAGAAGAGC AAGGATACTTGTACTCCTCTGCAGTACCAGAGGCCTCAGCAGAAGAAATTTTATGGGATGGGCTGTGGAACATGGATGAA GCTCATGGCAATCTCAGTGTAGCAAACAAAGCTGGTCTATACAATTTAGTTGCTCCCTTCTGTTGA
Protein sequence (LotjaGi6g1v0009600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYWGGVMTGHMGRGFTEELWRKGPWTAEEDRLLIEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKRGQITP QEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSDAAEKARNRLLRKQQFHQQQQQQQQQLLQQQQ MQQQQQQQQQMQFNLDLKGIMALLEENNSQRVPYISQAIRQDMVNMCPNTTEEQGYLYSSAVPEASAEEILWDGLWNMDE AHGNLSVANKAGLYNLVAPFC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 245 | 239 | 2.5E-104 | – | |
| PANTHER | 7 | 245 | 239 | 2.5E-104 | – | |
| ProSiteProfiles | 17 | 69 | 53 | 17.37 | ||
| Gene3D | 20 | 75 | 56 | 3.6E-19 | – | |
| SUPERFAMILY | 21 | 116 | 96 | 6.64E-30 | ||
| SMART | 21 | 71 | 51 | 9.5E-17 | ||
| Pfam | 22 | 69 | 48 | 1.2E-16 | ||
| CDD | 24 | 69 | 46 | 5.23846E-12 | ||
| ProSiteProfiles | 70 | 124 | 55 | 24.928 | ||
| SMART | 74 | 122 | 49 | 5.8E-15 | ||
| Pfam | 75 | 119 | 45 | 6.2E-14 | ||
| CDD | 79 | 120 | 42 | 2.50257E-10 | ||
| Gene3D | 79 | 124 | 46 | 1.9E-18 | – | |
| Coils | 149 | 169 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0009600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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