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LotjaGi6g1v0009600.2

Overview

Field Value
Gene ID LotjaGi6g1v0009600
Transcript ID LotjaGi6g1v0009600.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Myb transcription factor; TAIR: AT4G13480.1 myb domain protein 79; Swiss-Prot: sp|Q4JL84|MYB59_ARATH Transcription factor MYB59; TrEMBL-Plants: tr|A0A0R0HSY1|A0A0R0HSY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0009600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:1790140..1791292) extracted from Lotus japonicus Gifu genome v1.2.

ATGACTGGTCACATGGGTAGGGGTTTCACAGAAGAATTATGGAGGAAGGGACCATGGACTGCTGAAGAGGACAGGTTGCT AATTGAGTATGTTAGGCTGCATGGTGAAGGCAGATGGAACTCTGTTTCTAGGCTTGCAGGTCACAACCAATTTTTTTTAC TTCTTTTTTCTAAATATCAGTGGATTTCACTTTACAAGTGAAAATCCAACTATATTAAGCGCACTCTTTCAAATTTTTCT ACAATTGATTCTGAAATCAGGATTAGTTCTTAATAGAAGCTTCTCGGAGTAATTATTTTTGTTTCAAAATTGATTCTGAA AAAAAAGAAAACTGATTCAAACATCTTATAGTCCAAGTAGTAAAATTGCTTCCATCATCTACATTCTACTCTTCAAAGTG GCTACAATTATAGCACTTTTGGATCAACTTTTTTCTTTCTTCTAAATCAGTTCAGACACTCCAAAATTACTTACAGAATG CTTCTTCTTAGAATTGATTTTTATTTTAGAATCTAACAGTAGAATGACTTCTAGGCATGCACAATACCAGAAAAGAAAAG GGCTACATTCATGTTATCATGTACCTTATTGGTTCTTACTATTAACAGGGTTGAAAAGAAATGGGAAGAGTTGCAGATTG AGATGGGTGAATTATCTGAGACCAGACCTCAAGAGGGGTCAGATAACACCACAAGAAGAGAGCATAATTCTAGAGTTGCA TGCTAGATGGGGAAACAGGTAAAAAATTTAATTCCCACCCTCTTGATTTTCTGTAATTGGAAACAGGTTGTTATATCAAG GTCTTGACATATAAATAAAAATATTTACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGGAGAACTGACAATGAGATAA AGAATTACTGGAGGACCCATTTCAAGAAAAAGGCAAAAAGTCCCTCTGATGCTGCTGAAAAGGCAAGAAACAGACTCCTA AGGAAGCAGCAATTTCACCAGCAACAACAACAACAACAACAACAGTTGCTTCAGCAGCAGCAGATGCAACAGCAGCAACA ACAGCAACAGCAAATGCAATTCAACTTGGACCTGAAAGGGATCATGGCCTTGCTTGAGGAAAACAACAGCCAAAGAGTCC CTTATATATCTCAGGCAATTAGACAAGATATGG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0009600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACTGGTCACATGGGTAGGGGTTTCACAGAAGAATTATGGAGGAAGGGACCATGGACTGCTGAAGAGGACAGGTTGCT AATTGAGTATGTTAGGCTGCATGGTGAAGGCAGATGGAACTCTGTTTCTAGGCTTGCAGGGTTGAAAAGAAATGGGAAGA GTTGCAGATTGAGATGGGTGAATTATCTGAGACCAGACCTCAAGAGGGGTCAGATAACACCACAAGAAGAGAGCATAATT CTAGAGTTGCATGCTAGATGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGGAGAACTGACAATGAGATAAA GAATTACTGGAGGACCCATTTCAAGAAAAAGGCAAAAAGTCCCTCTGATGGAAAACAACAGCCAAAGAGTCCCTTATATA TCTCAGGCAATTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0009600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTGHMGRGFTEELWRKGPWTAEEDRLLIEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESII LELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSDGKQQPKSPLYISGN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45675:SF3
1 129 129 1.7E-85 –
PANTHER
PTHR45675
1 129 129 1.7E-85 –
ProSiteProfiles
PS51294
11 63 53 17.37
IPR017930
Gene3D
G3DSA:1.10.10.60
14 69 56 1.0E-19 –
SMART
SM00717
15 65 51 9.5E-17
IPR001005
SUPERFAMILY
SSF46689
15 110 96 1.11E-30
IPR009057
Pfam
PF00249
16 63 48 3.7E-17
IPR001005
CDD
cd00167
18 63 46 2.44151E-12
IPR001005
ProSiteProfiles
PS51294
64 118 55 24.928
IPR017930
SMART
SM00717
68 116 49 5.8E-15
IPR001005
Pfam
PF00249
69 113 45 2.0E-14
IPR001005
CDD
cd00167
73 114 42 1.2729E-10
IPR001005
Gene3D
G3DSA:1.10.10.60
73 132 60 3.3E-20 –
MobiDBLite
mobidb-lite
115 137 23 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0009600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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