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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0012100 |
| Transcript ID | LotjaGi6g1v0012100.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dirigent protein; TAIR: AT3G24020.1 Disease resistance-responsive (dirigent-like protein) family protein; Swiss-Prot: sp|Q7Y225|DIR16_ARATH Dirigent protein 16; TrEMBL-Plants: tr|I3SWT9|I3SWT9_LOTJA Dirigent protein; Found in the gene: LotjaGi6g1v0012100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:2294938..2299221) extracted from Lotus japonicus Gifu genome v1.2.
CTCCATTTCCTTTAATTTGAACAACTTCATTCGCACTCATGTCTCTCCCAACCACTCCAGCACTCACTGCAATTTTATTG ATCTATATATGACCAAGACTTGAAAATTCTATTTCACTCATCCAAACAAACTATTCTCTTCTCAATCACCAAGCAAAAGA AACATGTCTCTTGCAGTGTTGCTTGCTTTTGCAATGATAGCAATGCCATTGAGGATATCAGCAATTGACCCTCTTGCAGC CACTGGAAAAGAACCCATCATTGAGCTATACATGCATGACATTCTTGGAGGGAGTAACCCAACAGCTAGACCAGTAACAG GTTTGCTAGGAAACATATACAGTGGTCAAGTCCCCTTTGCAATGCCAGTAGGATTCAATATCCCAAGTGGTGGGATTCCA ATCCCCAATTCCAATGGTGCTGTTCCCACTGTCAATGGTGTTACTGGTATCCCTCTTGGAACTGGTTTGGCTGGTACTAC CTTTGCACCAAACTCAGGCAACAACAACCAAAATAATGTTCAGTTGCAGTTAGGACCTGATGGATTGGGACTAGGGTTTG GTACAATCACTTGTATTGATGATATACTGACATCTCAACCTGAATTGGGTTCCCAAATAGTTGGGAGGGCTCAGGGGGTT TATGTGGCGAGTTCCGCCGATGGGAGTAGGCAGATGATGGTATTCACAGCTTTGTTTGAAGGAGGGGAATATGGGGATAG TTTGAACTTCTATGGTTTGTTCAAGATAGGAAGCACCATGTCACAGTTATCTGTGGTAGGGGGAACAGGGAAGTTCAAGA ATGCAAAGGGGTTTGCTGAAGTGAGACCTCTTATCCCAGCAGGACAGATTGCCACTGATGGTGCTGAGACATTGCTGAGG ATCATTGTAAATTTGAAATACTGAAAGAAAAAAAACTCTTGTTTATGTGTAGATGATGTGTGAAAGCAAGGGTATATTGT TGGATTGCTGATGATTCATGAGATTGGTCTTGTATTTTGTCAGTTTGATTGCAGATTGTGTTTGAAATCATAGTTGTAAT CCAGTGAATTGTTCTTTTTTAAGTTTGGAGTTGTGGTCTAGGTTAATGATGGATTGTTCTTTCTGTTTCACTGCTATAGA ATGCTTTCATCAACGCACATTTCATTTCTTGTAAACCATCAAACTTAAGAGCTCACGAAAGAGGTTTTGAACCAAGTCTC AAATTGTTCTTTAAATGCATTTGTTGCATGTGTAAAAATCACAAACAGAAAACAAAATCATTCTATACAAATTGAAATGC TAATCAAGTAATAGAAAGTGCAGAGATGATCTTGGGAGACTGCAGCTAAATTTATGTTTGTTAACAGCTAGGATACCTAT TAAGTATTAGGTTAAGTTTGATATAAGTAACTGAATTTTTTTTTTTTTTTTTTTTTTGAAAGTTGATATAAGTAACTGAT AAATTCGTTGAAAGTTAATACGGTAAGTTAGAAGCTGAAAAATTATTTTTTAGGTGAAAGTTGTTAAACTAATTAATTAA ATTAGAAGTGTATAGTAAAAAACTTGAAAAGATTGCAGGCACTGAATGACCATTATAGCACGTTAGCGTGTAAGAGATAT CACATCATATTGAGATTAAAATTTCATAGTTTGAAGGGAAAAAAAGGTTGGGAAGAAGAAGAACTTTAATTTTTAGAAGG ACATAAATCAAAACTAGCATATATTAAACATGTAATTTAGCCAAAAAAATTAAATAACTTAGGGTGTGTTTGGAAACACA ACCCTACCAGCGTTAACGTGAATTGAACAAAGAGATGCGGCTTCCCAAAAGTTAAAATGTCAAAGGAGAGTGTGAGTTTT GTTAACTTTCAACTGAAGCTAATTTGCCAATTTGAAGACACAAATATTGGGAAAAATTTATTTTCGGATTTCGTAAGAAA AATTATTATGCAATATTGGGATTTAACTTTTTAAATTTGAACTTTCAGTACTCTTCCCTTCCGCAAGCAATTTTTTTTTT CAGTTCTTGGAGTTCCGAATTGTAATCATATGTTAAAAAATCTCATCCTCGATAACAAGTGTAAATCAAAACAAAAACAA ATGAATGACTAGATATGAACAATATCATATTTGGATAACAAACAAGTCATAACCAAGGGAATGCTCTCACATGCGATGGA GAAAATAGGTAGATTATTTTTTTCTCTTTAACAGATATAAATTTGTTCGGGAAACTGTAGAAATCCATATCTAAGCTCTA ATAGAGGGTTTTCCAGGTTCAAACTTGTATCATTATCATTAAAGGATCTAGTTTATCTTTTTTTTGGGGGTACATAGTTT ATCAACTATTAAACCAACACCACCTTGTTGATTTTTAAAAAAAAAAAACCAACACCTTGTTGGTAAATGACTATCTTTAA AATAAGTTTTAAACAAAAATATGATGCATTTTAAAGTATAGAACAATTAAGAAATGAACAAGGCCAATTAACGTTAACTG TTTTATGTGATCAGACTTCACCGGATGATTTAAGAATGGCTTGTATTATTGTGTTTATGTATATATATATATATATATAT ATATATATATATATATATACACACACATTATCATAGTGTAATTTGTCCAAGTTGAAATATAAGGAGGAAAATTCTAAACT GAATAAAATTGAAACTTGGTTGAAACTTGAAACCCTTGAATTTGATTAACAGAAGATAATGATGACCTGGAACAAATAAA GAATATTTGAAAATACTACCCCAATTCTCGCACTTTGAAATCTACTCTCCCCTTATTAGAGGGTCAACTAGCAATTGACT TTAGATTTTGGTTTAGTTGTACTTGTACCCACATCATGCTTCTGACTTATAACAGGTCTGCCACAACCAAAGCATAGAGA AAAGAAAGGATTTCTACATAGAACCTAGTGCGGTTACTTTCTACCATTACATCACAACAATGCCACTAAACAGAAATGTT AGCTCATTTATTAGGGTATAGGTTAAGGCACAACTAATCAACTTTCTTGTTACTTTCAACACCTTCAGCATCATCCATGT CTAGCAAGTCACAACCACTCCAACACACTCAGCATTCCTCCTCCTATATAATACCAATACTTGCATGCCATTACACTCAT CCAAACAAAGATTCATTACCAAATAGAAGAAGCAGCATCCACATTTGAAACACTTGGGAACAAGATGGTTAAGGGATCAT TAGCTCTAGCTGCTTTTTACAATTTTGCGATGTTGGTGGCCTTCACACATTTGGCAACAACTATAGCAGCAATTGACCCT CTTGCAGCCACAGGGAAAGAACCTATCATTGAGCTTTACATGCATGACATTCTTGGCGGAAGTAACCCAACAGCTCGACC GGTAACTGGGTTGCTTGGGAACATATACAGTGGCCAAGTACCCTTTGCAACCCCAGTAGGATTCAACCTACCACAAGGTG GCATTCCCATCCCCAATGCCAATGGTGCTGTTCCCACTGTCAATGGGGTTACTGGTATCCCACTAGGAACTGGTTTGGCT GGTACTACCTTTGCACCAAACTCAGGCAACAACAACCAAAACAATGCTCAGCTGCAGTTAGGACCTGATGGACTGGGCCT AGGTTTCGGGACAATCACAGTAATCGATGATATACTTACCTCTCAACCTGAGTTGGGTTCCCAAATAGTTGGTAAGGCTC AAGGAGTGTATGTGGCGAGTTCCGCAGATGGGACCAGACAGATGATGGCGTTCACAGCCCTGTTCGAAGGAGGGGAATAT GGGGATAGCTTGAACTTCTATGGCCTGTACAAGATAGGAAGCACCATGTCACAATTATCAGTAATAGGGGGAACAGGAAA GTTCAAGAATGCAAGAGGGTTTGCAGAACTGAGATCTCTTATCCCACCAGGACAGATTGCTACAGATGGTGCTGAGACAT TGCTGAGGATGACTATCCATTTGAAGTACTAAAACTGTTATGTGGAAATGTAAAAAAAACCAGGTACTGTTTCATTACTG ATGATTTATGAGATTGATATTGTTTGTTTTCATGTTTGATTGCAAAGTGTATTTCGAATTTTAGTTGTAATCCCATGAAA CCATATGGTGATTTGTAATTTTTGTGATAATTTTGGAACTTAAGTATTGGTGGTATTCTACTGCTTATGTAGTGACATGA GTCAATGTTAAGAGGGATTTTAAACACAAGCAGAAGCTACAAATGCATCAGATTATGACGGGTTACATGTGAAAAAAGAA AAAGCAAATCATTCACAGGCCATTATAAGTGCTGAAACATTAGC
CDS sequence (LotjaGi6g1v0012100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCTTGCAGTGTTGCTTGCTTTTGCAATGATAGCAATGCCATTGAGGATATCAGCAATTGACCCTCTTGCAGCCAC TGGAAAAGAACCCATCATTGAGCTATACATGCATGACATTCTTGGAGGGAGTAACCCAACAGCTAGACCAGTAACAGGTT TGCTAGGAAACATATACAGTGGTCAAGTCCCCTTTGCAATGCCAGTAGGATTCAATATCCCAAGTGGTGGGATTCCAATC CCCAATTCCAATGGTGCTGTTCCCACTGTCAATGGTGTTACTGGTACTACCTTTGCACCAAACTCAGGCAACAACAACCA AAACAATGCTCAGCTGCAGTTAGGACCTGATGGACTGGGCCTAGGTTTCGGGACAATCACAGTAATCGATGATATACTTA CCTCTCAACCTGAGTTGGGTTCCCAAATAGTTGGTAAGGCTCAAGGAGTGTATGTGGCGAGTTCCGCAGATGGGACCAGA CAGATGATGGCGTTCACAGCCCTGTTCGAAGGAGGGGAATATGGGGATAGCTTGAACTTCTATGGCCTGTACAAGATAGG AAGCACCATGTCACAATTATCAGTAATAGGGGGAACAGGAAAGTTCAAGAATGCAAGAGGGTTTGCAGAACTGAGATCTC TTATCCCACCAGGACAGATTGCTACAGATGGTGCTGAGACATTGCTGAGGATGACTATCCATTTGAAGTACTAA
Protein sequence (LotjaGi6g1v0012100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLAVLLAFAMIAMPLRISAIDPLAATGKEPIIELYMHDILGGSNPTARPVTGLLGNIYSGQVPFAMPVGFNIPSGGIPI PNSNGAVPTVNGVTGTTFAPNSGNNNQNNAQLQLGPDGLGLGFGTITVIDDILTSQPELGSQIVGKAQGVYVASSADGTR QMMAFTALFEGGEYGDSLNFYGLYKIGSTMSQLSVIGGTGKFKNARGFAELRSLIPPGQIATDGAETLLRMTIHLKY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| PANTHER | 2 | 237 | 236 | 1.5E-131 | – | |
| PANTHER | 2 | 237 | 236 | 1.5E-131 | – | |
| Phobius | 3 | 13 | 11 | - | – | |
| Phobius | 14 | 20 | 7 | - | – | |
| Phobius | 21 | 237 | 217 | - | – | |
| Pfam | 115 | 234 | 120 | 3.3E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0012100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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