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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0012100 |
Transcript ID | LotjaGi6g1v0012100.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Dirigent protein; TAIR: AT3G24020.1 Disease resistance-responsive (dirigent-like protein) family protein; Swiss-Prot: sp|Q7Y225|DIR16_ARATH Dirigent protein 16; TrEMBL-Plants: tr|A0A072VHX9|A0A072VHX9_MEDTR Dirigent protein; Found in the gene: LotjaGi6g1v0012100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:2298089..2298889) extracted from Lotus japonicus Gifu genome v1.2.
GCAGCATCCACATTTGAAACACTTGGGAACAAGATGGTTAAGGGATCATTAGCTCTAGCTGCTTTTTACAATTTTGCGAT GTTGGTGGCCTTCACACATTTGGCAACAACTATAGCAGCAATTGACCCTCTTGCAGCCACAGGGAAAGAACCTATCATTG AGCTTTACATGCATGACATTCTTGGCGGAAGTAACCCAACAGCTCGACCGGTAACTGGGTTGCTTGGGAACATATACAGT GGCCAAGTACCCTTTGCAACCCCAGTAGGATTCAACCTACCACAAGGTGGCATTCCCATCCCCAATGCCAATGGTGCTGT TCCCACTGTCAATGGGGTTACTGGTATCCCACTAGGAACTGGTTTGGCTGGTACTACCTTTGCACCAAACTCAGGCAACA ACAACCAAAACAATGCTCAGCTGCAGTTAGGACCTGATGGACTGGGCCTAGGTTTCGGGACAATCACAGTAATCGATGAT ATACTTACCTCTCAACCTGAGTTGGGTTCCCAAATAGTTGGTAAGGCTCAAGGAGTGTATGTGGCGAGTTCCGCAGATGG GACCAGACAGATGATGGCGTTCACAGCCCTGTTCGAAGGAGGGGAATATGGGGATAGCTTGAACTTCTATGGCCTGTACA AGATAGGAAGCACCATGTCACAATTATCAGTAATAGGGGGAACAGGAAAGTTCAAGAATGCAAGAGGGTTTGCAGAACTG AGATCTCTTATCCCACCAGGACAGATTGCTACAGATGGTGCTGAGACATTGCTGAGGATGACTATCCATTTGAAGTACTA A
CDS sequence (LotjaGi6g1v0012100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTAAGGGATCATTAGCTCTAGCTGCTTTTTACAATTTTGCGATGTTGGTGGCCTTCACACATTTGGCAACAACTAT AGCAGCAATTGACCCTCTTGCAGCCACAGGGAAAGAACCTATCATTGAGCTTTACATGCATGACATTCTTGGCGGAAGTA ACCCAACAGCTCGACCGGTAACTGGGTTGCTTGGGAACATATACAGTGGCCAAGTACCCTTTGCAACCCCAGTAGGATTC AACCTACCACAAGGTGGCATTCCCATCCCCAATGCCAATGGTGCTGTTCCCACTGTCAATGGGGTTACTGGTATCCCACT AGGAACTGGTTTGGCTGGTACTACCTTTGCACCAAACTCAGGCAACAACAACCAAAACAATGCTCAGCTGCAGTTAGGAC CTGATGGACTGGGCCTAGGTTTCGGGACAATCACAGTAATCGATGATATACTTACCTCTCAACCTGAGTTGGGTTCCCAA ATAGTTGGTAAGGCTCAAGGAGTGTATGTGGCGAGTTCCGCAGATGGGACCAGACAGATGATGGCGTTCACAGCCCTGTT CGAAGGAGGGGAATATGGGGATAGCTTGAACTTCTATGGCCTGTACAAGATAGGAAGCACCATGTCACAATTATCAGTAA TAGGGGGAACAGGAAAGTTCAAGAATGCAAGAGGGTTTGCAGAACTGAGATCTCTTATCCCACCAGGACAGATTGCTACA GATGGTGCTGAGACATTGCTGAGGATGACTATCCATTTGAAGTACTAA
Protein sequence (LotjaGi6g1v0012100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKGSLALAAFYNFAMLVAFTHLATTIAAIDPLAATGKEPIIELYMHDILGGSNPTARPVTGLLGNIYSGQVPFATPVGF NLPQGGIPIPNANGAVPTVNGVTGIPLGTGLAGTTFAPNSGNNNQNNAQLQLGPDGLGLGFGTITVIDDILTSQPELGSQ IVGKAQGVYVASSADGTRQMMAFTALFEGGEYGDSLNFYGLYKIGSTMSQLSVIGGTGKFKNARGFAELRSLIPPGQIAT DGAETLLRMTIHLKY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_EUK | 1 | 29 | 29 | - | – | |
Phobius | 1 | 3 | 3 | - | – | |
SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
Phobius | 1 | 29 | 29 | - | – | |
Phobius | 4 | 11 | 8 | - | – | |
TMHMM | 7 | 29 | 23 | - | – | |
PANTHER | 10 | 255 | 246 | 6.0E-146 | – | |
PANTHER | 10 | 255 | 246 | 6.0E-146 | – | |
Phobius | 12 | 29 | 18 | - | – | |
Phobius | 30 | 255 | 226 | - | – | |
Pfam | 134 | 252 | 119 | 3.7E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0012100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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