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LotjaGi6g1v0019500.1

Overview

Field Value
Gene ID LotjaGi6g1v0019500
Transcript ID LotjaGi6g1v0019500.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Pentatricopeptide repeat-containing protein; TAIR: AT1G31430.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430; TrEMBL-Plants: tr|K7L2C8|K7L2C8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0019500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:3481859..3491255) extracted from Lotus japonicus Gifu genome v1.2.

GTTGATGCTAGAAGAAACTGCTACCACTCACGCACGCATCAAGGGTGGTGATGAACAACTGCTACCACTCCAACTCCATG CCTTGCTTGATAAGCTGCTGCTGCTGCATCTACATTCTATTTTATCAAGTCTGAAGGTGGTGGTGGTCTCCACTTTACAG GTATTGTCCCTTTCCAGCACTCACTGCAGTATTATTTGGCCGTGTTAACTACATTTGTAAAATTTGTGCCTTGTTGTTTG TCTAAATTGGATCTTGTTTTGCATTTCGAAATAGAGACTTTGCATGCTAACTGTGATGCTCCCTGATTAGTGTCCTTAAT TTTCCATGGAACCATAAAATTTTAATTAAACCTGTCTTATGAGTCCTGTAGAGGTGTTAATTGAGTTGAGAGGCCAGCTA GGTTGGTCCTCTCTTATGAGTCCTGTAGAAAAAATGTTCCAGTGTCTTCTTCCTCAGAAAACACCTCCTCAGATGATTTT TATCGATGAAAGGAAGAATTCTACAGTGCAATATTTCTCTATCATTTCATGCGTTTTGGTAATAGTCCTCGCCGAAGGAC GGAGCATCAACGAGGCCTCACGTGGCACGGTTACGTGTTAAACTAGTCCTTGTTGGAATTATATTTTTTTTAATACATTA CACATCAGATAATTAATTAAAATTGAAAAAAAAAACTTTTAAAAACCAAGATTACCCTTCTATTTAGAGGTCTTGGAAAT CTCCTACGGTATTTTTGTCGGACCAAAGATCCCTATCTCTACCAACTAGACTTTATGTAGCCTATAACCCTTTTACAACA TGTAACAGACCCCTAATTAGCCGTTAACAGACTTCTAACTAACAATACTAGCAGCCTGAAACAACTTTTAAGTTTTAACT GCAATAAGAGATTCTTTAGTTCATTTTCTCCTAACATAGATCCGAAGTTCCAAACACATTATATCTCAAGGAAGATTGTC ATTCTTGCAGTTCTCCACAATAATGCTGAGGAACATCCACTCACCACCAACAGCAGCAATAGTCTTGTCGATCTTTAGAA GTACAGAACTTTACCTTTGTGAGAATGAAATTAGCCATAATTTCTCTCGTTCATTTTAAATAGTAAACAGCAAGCCACTC TCACTGTTTTTGAAGGACAACTTCTAAATTAAAGGATAACTTCTACTAACTTGATTATTTCTCGGTTCCTAAATAATTAC ACCTGTATTTATAAAGTTGGTTTATAATTGACTTCAGGAACCAATTTTGAACTGGTATGAAGCCAGATTGGATTTCCAAT TTTAAAAAGAAGCTTTGGTTTAAAACCCCGTTTTGAACCACAACCCGTTTAATGAATCAGTTTTTCCATTTTCGATTACC CATGGTTGGTAGCTGGAGAATGGGATCAGTGTCAGGATCCCTTGCTGTTAAAATTTTACATATTAAAATATTGTGTAAGT CTTTCTGTTTGCTTTAAATAATTGTGTTTCCATTGAAGTTTTTAAATATTTACAGAGAGACATAAACAGAATGAAGTGAT TATGTTCCAATGATATAAGCATCAGGATCCTCTCATATTTGAAGCAAGGAAAACAAACAAGTTCAAACTATATAGCCGTT GTTTATTTATACCAACAAATGCAGTATCAAGTTTAAGGAGTGTCATGTCACACAGTCACAGCGCAACAAAATAATAAAGG GAACATGTATTTCTCTTCTCAAAAGCTGCAAATCCATGCGGGAGTTGAAGCAAATTCAGACCCTCATATTCTGTGCAGGC CTGGAACAAGACCGAGACACCCTCAACAAGCTCATGGCCATTTGTACAGACTCCTTCATTGGAGACTTTCACTATGCGCT TAGAATCTTCAACAGCATCCAACAGCCATCTTTGTTCATCTACAATGTCATAATCAAAGACTTCGCGAAAAGGGGTAGTT TGAGAAGAGCCATTTCTCTGTTCCAGCAACTGAGGGAAGATGGGCTATGGCCTGATAATTACACCTTATGTTTTGAAGGC CATTTGGCTGCATGGGAGAGGTTGGTGAACGGGGGAAGGTTCATGCCTTTGTGATCAAGACTGGCCTTCAGTTTGATGCT TATGTTTGCAACTAGCTGATGGACATGTATGCTGAATTGGGGCATGTTAGTGGTCTCAAACTGTTATTTGAGGAATGCCT GACAGGGACAGTGTTTCTTGGAACATCATGATTTCGGGTTGCATAAGGTGGAGTGGGTTCCTGGAGGCTATTGAATATTT TCAGCAGATGAGAATGGAAAGCGAGGAGAAACCTAATGAAGGCACCGTTGTGTGCACTCTAACGGCATGTGCAGTGTTGA GGAATGTGGAGGTTGGCAAGGAAATTCACAGTTACATTGCAAAGGAACGGTATTTTACAACCATAATGGGGAATGAATTG TTGGATATGTATTGTAAGTGTAGGTTTGTGAGCGTTGCCTGGGAGATTGTTAATGGGATGACCATGAAGAATGTGAATTG TTGGACCAGTATGGTTACCGGGTATGTGAATTGTGGTCAGTTGGATCAAGCTAGAGATTTGTTCGAGAAGAGTCTTTGGA CAGCCATAATTAATGGGCATGTGCAGTTTAATCGTCATAGGAGTGAAGCCTGACAAGTTCATTGTGGTTTCTCTCCTTAC ATGTTGTGCTCAATCAGGAGCTCTGGAGCATGGCAGGTGGATTCATGATTACGTAAATGAAAACAGAATCATGGTGGATG CGGTGGTTGGTACTGCCCTTATTAAAATGTATGCTCAAAGTGGATGTGTAGAGAAATCTTTGGAGGTTTTTAATGGATTA AAAGAAAAGGATACTGCCTCATGGACCTCAATTATTTGTGGACTTGCCATGAATGGTAAGACAAACAAAGCACTGGAGCT GTTTGAAGCAATGGAAACATTGGGGGCAAAACCTGATGATGTTACCTTTATTGCTGTTTTGAGTGCATGTAGTCATGCAG GTTTGGTAGAAGAAGGCCGCAAGCTATTTCATTCCATGTCAAGTACATACCATATGAAGCCAAATTTAGAACACTATGGG GGTTTCATTGATCTTCTTGGTCGAGCTGGACTGTTACACGAGGCAGAGGAGCTGGTAAGGAAGTTACCAGATCAAACTGA TGAGATAATAGTTCCACTTTATAGAGCTTTGCTAAGTGCCTGCAGAACTTATGGCAATATCGATATGGGTGAAAGGCTTG CTACAACACTAACAAACGTTAAATCTAGTGAGTCAAGCCCTCATTCACTTCTTGCTAGCATTTATGCTTCAGCTGACAGA TGGGAAGATGTGAACAAGGTGAGAAGTAAGATGAAAGATTTGGGTATCAAAAAGGTTCCGGGTATCAAATAGGTGGGGCC TTTTCCCATTCTCTGACCAAAATTGGTCTGCAACATGGAATGGGTAATCAGCAATTGATGTGTAATCTTTTAAAATCCTA ATCATTGATTTTTTGACTGGTGAACTGTAAGTCCAGTAAGGTTCGGTAACTTCTCTGCTCCCCTTGATGAAGCATTAATA CACGTTTCGCTGGTATGTTGGTTGCTGATTGTGGATATTAATAATTATTTCAATATTTTACCTGTATTAAGTATTAACAC AAATCTGGTGGTTGGGTGGGGTGGGGTGGGGGGGGGGGGGGGGCTATGAAGAACTGAAGCATGGTTTTTCCATACAAATA TGATAAAATAGATTAGAGAACCTCTGAATCTAGAAATTTCATAATTTCTATGACATCTGTGATTTTGAAAGTCATATCTA TTATGTGGTCAGTTCAACAATGTGTATCAATATAGATGCCGATGACTCGTAAATTTTACCTATTTTCACGCATTAAGGAT ACTGATAATGTGAAAGTTTTGTACTAAATTTTGAAAGTTTTGTTGTCCATTCTGATCATACTTACAAATTCATTCCTTCT GATTAATTACTGCATCATTTGTTTAAGAATTTGTCCATATAGCTTTTCTTGACTATGGATTTTTTTGGATTATTTTCTTG TAAATATCTCGCTGGAGCCAGGAAACATCTTCTTGGGTGTTGTCAAGCCCTTAAATATAATTTTTCTTTCGTCTGGGATT ATGTTCTTAGCTTAGAGCCTAGGCAGCCCTTCGGTATTTTTGGTATTGTTCTTTTATGTTACCTTATTGTCATCATCACT GTACTTCATTTCCTCTCTTTAATAACAGTTCCTTTTCTATAAAAGAACCACAGTTACTTATTACTTTTTCAATGATTTTT TTATCATCATTTACTGATGAATTTGTTGGATATCATTGTCTGTAGTTGGTGGAGCATTTTTTCCAGTCTTTTCTAAATAC TTCAGGTATGACACTTCACATTCGCCAGGTATTAAAACCTAGAATCTAGTTTTTTTTTTTTGCTTTTGCTTACAAGTAGC TGCAGTCGTTGTTAGTAAACTGATCAGATTATGCATTAATCATCTGTGTGTACTTTGATCAGATTACTTGAAGAAATCAA AGGAGGTGAATTTGTATTTCTCTATTCTTCTGCAGTTAGTGTGTGTGTATATTGATCTGTATGATTCAGTAATGTTGAAT AATTTATAATAATGTTGAATCTTGTAGTTGGCTCAATTGATAAAGAAAGGATCTGTTAGAGTGGGTGATGTGGGCAAAGT TCTTTGTCAAGATTTGGATAAGTATTGCAGTCGAATAAGGTAAAATTTAGAGGGATCTTATTTTACCATAGTGGTTCACT TGATTGGCCAGTGTATTGCACGAGGTAGAAATCATTGATGATGTAGATAGAGGGGAGACTAAAACCTTATATTAATGATT ATGACTTTAGGATGACTGGAAGTGTATGCTTTTGGCCTTTGGGCCTAAAATTTGACATAATGCGTACCAACACTGATGAT GTTTTTTCTTTCAGTTGGAGTTAAGTGACCCTTAAAAGTCTTTTATTTAACATGTGGTGGATCCAATCAAGTGATAATTG TGATTTCTTGCGCACTACACTATATTTCTTTTTCCTTGTTAACAGTTAGCAATTGAGAGTGATATTGCGTATACAAATAA ATATGTTCATATTACCTTTTGTATTTACAATTTTGCGAACACAAGTTAGCATTTGCATTTTAGTATTGCAATCCACATGT GTTCTCCTGTAGGTAACACTTAATTTGCTTTATTATCTTGCAGCCTCCAAGACTGGCTCTTAGCAATTGTCTATTACAGC ATGCATTGGCCCTGGTATGGATGTTTAATTCGTACTTTTCATACTGTTTATGAGAAACCAGTAAGAAAAAAATGGTATGC AAACTAGTTTGAGAAAGTCTATATCTGATATGTGTTTGGTATATAAGCTTCAAAGAACCTGGATGTGTCTGTTTTAAAGC TAACTGTTGCTTAATCGAAATGTTTGAGAAAGTCTATTGTTTAAATGCGTTTCATGTGTTCTTACAACTTTTTGAAATAA AAAACAAAATCATATGAAAATTGTTGTTGTTGGAAAACAATGAACCAATTTAAGAACAGAGACTGAAATACATCTCTTTA TTACTAACAATCTTGTTGCAAACACAACAAGATACTGACATGAAAGTTCCCCAATAAATACTAAAGCAATCATACATGAA TATATATAATAGTGTAAGCCAAATAAATTAGAAGGATTGGCATTTCAAATCTCGCTTCCCCGTTTTGGTTGGACCATCAC TTGAACACAATAAGATTAGGAAGTGCAAGATGGCCATCAGAGAAGTAAAATCAGCCTCGTTTGCCTTTGTTTCTTGATAA ACACTAGAATCTGGAAAGAAATAGTAATATTCATTAATGATATTCACACATATAATGATAAAATGTGCTGTGTGCGTGTG AATGTAAAGATAAAAATTACTTACATGATTTATCCCAAATAGTGAATCCGCATTTCAAGCTTAATTGTACACTGGTGGTG GTGGAGAAGCATAGATGTAAACTGGTGGTGGAGGAGACTTCGTTGGTGGGGGAGGTGATTTGTAAATGTATGGGGGAGGG GGAGATGGTGATGGTGGTGGTGGGCTTATATAGTGGTAAGGAGGTGGAGGAGATGGCGATGGTGGCGGAGGGGACCTGTA GTAGTACGGAGGATGAGAAATATGGGATGGTGGAGGAGGACTCTTGTAATAGTATGGAGGTGGAGGTGATGGGGATGGCG GTGGAGGTGATTTGTAGTAGTAGGGTGGTGGTGGAGATGGTGATGGTGGAGGTGGAGATTTGTAGTAGTAGGGGGGAGGA GGATAGGGAGATGGTGGAGGGGGACTCTTGTAGTAGTATGGAGGCGGAGGTGATGGGGATGGTGGTGGGGGAGATTTATA ATAGTATGGAGGGGGAGGAGATGGTGATGGTGGGGGTGGTGACTTATAGTTGTATGGAGGGTGTGAGATTTCTTTGGGTG GAGGAGGAGATTTATAATAGTAAGGTGGGGGTGGAGATGGTGACTTATAATAATATGGTGGAGGAGGGGATGGTGATGGT GGGGGTGGTGACTTATAGTAGTATGGAAGGTGTGATGTTTCTTTAGGTGGAGGGGGGGATTTATAATAGTAAGGTGAAGG AGGGGATGGTGATGGTGGGGGTGGTGATTTATAGTAGTATGGAGGGTGTGAGATTTCTTTTGGTGGAGGGGGGGATTTAT AATAGTAAGGTGGAGGAGGGGATGGTGATGGTGGGGGTGGTGATTTATAGTAGTATGGAGGGTGTGATATTTCCTTAGGT GGAGGGGGGGATTTGTAATGGTAAGGTGGAGGTGGGGATGGTGATGGTGGGGGTGGTGACTTATAGTAGTATGGTGGGTG TGATATTTCTTTAGGTGGAGGGGGGGATTTGTAATAGTAAGGTGGAGGAGAGGATGGTGATGGTGGGGGTGGTGACTTAT AATAATATGGTAGTTTAGATACCGGTGATGGTGGAGGTGGAGACTTGTAATAATAAGGAGGTGATGATGATTTGACGGGA GGAGGAGGTGACTTATAGTAATATGGAGGAGAATAATAGTGGAGTGGTGGTGGTGGTGGTGACTTATAGTAGTAAGGAGT TGGGGAAGGTTTGGACTTTTCACATTCTTTAAAGTGCTTCTTTGATGCATAAGCAAATGGCTTTGCCTTGAGCACAACCT CATACTTGTTATTGGATTTCAGCTTCAAGTTGGTTCCCTTATTCAGTTTAGTAGGTAGGTCGAAGGGTGAGTGTTTAGGT GGAGCATAAAGCACAGCCTTGCACACTGTCGGGCCATATTTTACATAGTCAAAGTCCTTAACTGTGATGCTGTACTTGCC ATTGCTCTTTGTTTTACCATAGGCTTTGATGATATTCTTCCCTGCTTTGCATTTCACCTCCACAATGGCACCTGCCCCAT AGCAAAATTAATTGCAATTTTAAACATAAATGAAGTCGAAGAAACATATTATACAAGACTACATTGTTATCAAAGATCTG CTAGTTAAACTATCCTTGTTAGTTGTCATACAACATATTGATATTAGGTAGGGTTATTAAAACTTAACATGTCAACTAAT GTATCATTGCCATATGATTTTTTTCTTTGGATATTACAGCTTGCATCCAATTCTAAAAATTATATTCTCTGCTTTAAAAC TTGGAGTTAAGTAGGTTTCAAGAGTTGATTTTTCTGTTGTGAGAGTCATATATTTCGTATAATTAAATATAGTTTATTGT TTTGTCAAATTAAAGATTATGAGTATGATAAAATATATCTACATATGTAATAATAATAATAACTACTATCATAATTTTGA GATGCATAGCAAAGCCTCATTTACATATTTCAAATTATATTCTAATCCTAAGGATGAAGAATTAAATTCATCGTACCTTT GAGGTGTTTCTTGTTATGAGACTTTTCAGGATACTCCCAGTCATAGCACCTGTAGCTGTAGACTTTACCAACAACCTTCA CAATCAATGGGTGGTGGTTGGGATGTGGGTGAGGATACACAACTGGTGGAGGAGGAGAATTATAGTAGTATGGTGATGGT TGGTGCTTGGGTGGTGGTGGAGACCTGTAATAGTATGGTGGATGGGGTACAGGTGATGGAGGAGGAGGGGACTTGTAGTA GTAGTGTGGTGGAGGAGATGGTGAAGGTGGTGGTGGAGACTTGTAGTAGTAAGGTTGGGGAGGGGAGGGTGATGGAGGTG GAGGAGATTTGTAGTAGTAAGGAGGTGGAGGTGAAGGAGAGGGTGGCGGAGGAGACTTGTAGTAGTATGATGGAGACTTG TGTTCATATGGAGGTGGAGGAGACTTGTAGTAATAGGGTGGTGGAGGAGATGGTGAAGGCGGTGGTGGAGACTTGTAATA GTAAGGTGGGGGAGGGGAGGGTGAGGGAGGTGGGGGAGATTTGTAATAGTAAGGAGGTGGAGGTGAGGGAGAGGGTGGTG GAGGAGATTTGTAGTAGTAAGGAGGTGGAGGTGAAGAGGGCGGTGGAGGGGACTTGTACAAGTAAGGAGGTGGAGGTGAT GGGGAAGGTGGTGGTGGTGATTTATACTCATAGGGAGGTGGGCGTGATGGTGAAGGAGGTGGAGGTGACTTGTATTGGTA AGGTGGATCTTTATGCTCAATTGGTGGTGGAGACTTATAAATGTACGGAGGTGGAGGTGATGGTGAAGGAGGTGGAGGTG ACTTGTATTGGTAAGGTGGATCTTTATGCTCAATTGGTGGTGGAGGTGGTGGAGACTTATAAATGTATGAGGGTGGAGGT GATGGTGAAGGAGGTGGTGGTGATTTGTACTCATAAGGTGGTGGCGGAGGGGAAGAGTAAATATAACCATCAGCAGCAGC AGAAACCACAGTTGTAGAGATGAAAACAATGGCCAATGCCATAGTCATTTGTGGCCAGAGGCGACCCCTAACGGGGTTTC TGGCCCTACCAGTCATGGGTGGAAGAAGAAAACTGGTTACCCTCTTGCCAATGCTTTTGATAATTAGATCCCAGTTGATA TTCTTAGAAGAGGGGGATTCAGATAGTGAAAGAGTTTGGTGTTAGTGATGATTGAGAAAAGGTGCATGATAATTAGTACT TATAGTGAGAGCAAGTCATTGTAATGAGGGACCAATTCAAAATACTTAGCTGGTCTCATTTTGATTTCAATGTTTTATAT ATTATGTTTCCCCGGCAAGCAGGCCACTTCTTTCCCATTTCTCCAAATGGCCATAATAATGTCTAAAACCATTCTCTATA TTCTAATTTCCAGCTACTAATTATAAGGCAAATTAGCACCTTGACGACATGTAAGTCCAAATTTACAAGTAAATGAATAA TGTATTTAGCATCACTTATCGATGAGTAGTCATGAGTTTCGTTCAAATCGTTGATGGCAGCTATTGCAAGATTTGTATTA ATTCTTTTCTTCTATGTTGTTTAAGCGTGATGACATT 

CDS sequence (LotjaGi6g1v0019500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGCATGTGCAGTTTAATCGTCATAGGAGTGAAGCCTGACAAGTTCATTGTGGTTTCTCTCCTTACATGTTGTGCTCA ATCAGGAGCTCTGGAGCATGGCAGGTGGATTCATGATTACGTAAATGAAAACAGAATCATGGTGGATGCGGTGGTTGGTA CTGCCCTTATTAAAATGTATGCTCAAAGTGGATGTGTAGAGAAATCTTTGGAGGTTTTTAATGGATTAAAAGAAAAGGAT ACTGCCTCATGGACCTCAATTATTTGTGGACTTGCCATGAATGGTAAGACAAACAAAGCACTGGAGCTGTTTGAAGCAAT GGAAACATTGGGGGCAAAACCTGATGATGTTACCTTTATTGCTGTTTTGAGTGCATGTAGTCATGCAGGTTTGGTAGAAG AAGGCCGCAAGCTATTTCATTCCATGTCAAGTACATACCATATGAAGCCAAATTTAGAACACTATGGGGGTTTCATTGAT CTTCTTGGTCGAGCTGGACTGTTACACGAGGCAGAGGAGCTGGTAAGGAAGTTACCAGATCAAACTGATGAGATAATAGT TCCACTTTATAGAGCTTTGCTAAGTGCCTGCAGAACTTATGGCAATATCGATATGGGTGAAAGGCTTGCTACAACACTAA CAAACGTTAAATCTAGTGAGTCAAGCCCTCATTCACTTCTTGCTAGCATTTATGCTTCAGCTGACAGATGGGAAGATGTG AACAAGGTGAGAAGTAAGATGAAAGATTTGGGTATCAAAAAGGTTCCGGGTATCAAATAG 

Protein sequence (LotjaGi6g1v0019500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGMCSLIVIGVKPDKFIVVSLLTCCAQSGALEHGRWIHDYVNENRIMVDAVVGTALIKMYAQSGCVEKSLEVFNGLKEKD TASWTSIICGLAMNGKTNKALELFEAMETLGAKPDDVTFIAVLSACSHAGLVEEGRKLFHSMSSTYHMKPNLEHYGGFID LLGRAGLLHEAEELVRKLPDQTDEIIVPLYRALLSACRTYGNIDMGERLATTLTNVKSSESSPHSLLASIYASADRWEDV NKVRSKMKDLGIKKVPGIK 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 3 80 78 1.3E-5
ProSiteProfiles 14 48 35 6.171
PANTHER 17 248 232 1.6E-60
ProSiteProfiles 49 79 31 7.75
Pfam 79 127 49 1.9E-10
ProSiteProfiles 80 114 35 11.4
Gene3D 81 256 176 6.0E-31
TIGRFAM 83 115 33 3.9E-7
ProSiteProfiles 115 145 31 8.528
TIGRFAM 117 151 35 6.6E-5
ProSiteProfiles 151 181 31 7.048
Pfam 155 178 24 0.16
ProSiteProfiles 220 254 35 7.18
Pfam 226 252 27 1.4

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0019500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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