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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0019500 |
| Transcript ID | LotjaGi6g1v0019500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G31430.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430; TrEMBL-Plants: tr|K7L2C8|K7L2C8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0019500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:3482631..3491255) extracted from Lotus japonicus Gifu genome v1.2.
TTATGTAGCCTATAACCCTTTTACAACATGTAACAGACCCCTAATTAGCCGTTAACAGACTTCTAACTAACAATACTAGC AGCCTGAAACAACTTTTAAGTTTTAACTGCAATAAGAGATTCTTTAGTTCATTTTCTCCTAACATAGATCCGAAGTTCCA AACACATTATATCTCAAGGAAGATTGTCATTCTTGCAGTTCTCCACAATAATGCTGAGGAACATCCACTCACCACCAACA GCAGCAATAGTCTTGTCGATCTTTAGAAGTACAGAACTTTACCTTTGTGAGAATGAAATTAGCCATAATTTCTCTCGTTC ATTTTAAATAGTAAACAGCAAGCCACTCTCACTGTTTTTGAAGGACAACTTCTAAATTAAAGGATAACTTCTACTAACTT GATTATTTCTCGGTTCCTAAATAATTACACCTGTATTTATAAAGTTGGTTTATAATTGACTTCAGGAACCAATTTTGAAC TGGTATGAAGCCAGATTGGATTTCCAATTTTAAAAAGAAGCTTTGGTTTAAAACCCCGTTTTGAACCACAACCCGTTTAA TGAATCAGTTTTTCCATTTTCGATTACCCATGGTTGGTAGCTGGAGAATGGGATCAGTGTCAGGATCCCTTGCTGTTAAA ATTTTACATATTAAAATATTGTGTAAGTCTTTCTGTTTGCTTTAAATAATTGTGTTTCCATTGAAGTTTTTAAATATTTA CAGAGAGACATAAACAGAATGAAGTGATTATGTTCCAATGATATAAGCATCAGGATCCTCTCATATTTGAAGCAAGGAAA ACAAACAAGTTCAAACTATATAGCCGTTGTTTATTTATACCAACAAATGCAGTATCAAGTTTAAGGAGTGTCATGTCACA CAGTCACAGCGCAACAAAATAATAAAGGGAACATGTATTTCTCTTCTCAAAAGCTGCAAATCCATGCGGGAGTTGAAGCA AATTCAGACCCTCATATTCTGTGCAGGCCTGGAACAAGACCGAGACACCCTCAACAAGCTCATGGCCATTTGTACAGACT CCTTCATTGGAGACTTTCACTATGCGCTTAGAATCTTCAACAGCATCCAACAGCCATCTTTGTTCATCTACAATGTCATA ATCAAAGACTTCGCGAAAAGGGGTAGTTTGAGAAGAGCCATTTCTCTGTTCCAGCAACTGAGGGAAGATGGGCTATGGCC TGATAATTACACCTTATGTTTTGAAGGCCATTTGGCTGCATGGGAGAGGTTGGTGAACGGGGGAAGGTTCATGCCTTTGT GATCAAGACTGGCCTTCAGTTTGATGCTTATGTTTGCAACTAGCTGATGGACATGTATGCTGAATTGGGGCATGTTAGTG GTCTCAAACTGTTATTTGAGGAATGCCTGACAGGGACAGTGTTTCTTGGAACATCATGATTTCGGGTTGCATAAGGTGGA GTGGGTTCCTGGAGGCTATTGAATATTTTCAGCAGATGAGAATGGAAAGCGAGGAGAAACCTAATGAAGGCACCGTTGTG TGCACTCTAACGGCATGTGCAGTGTTGAGGAATGTGGAGGTTGGCAAGGAAATTCACAGTTACATTGCAAAGGAACGGTA TTTTACAACCATAATGGGGAATGAATTGTTGGATATGTATTGTAAGTGTAGGTTTGTGAGCGTTGCCTGGGAGATTGTTA ATGGGATGACCATGAAGAATGTGAATTGTTGGACCAGTATGGTTACCGGGTATGTGAATTGTGGTCAGTTGGATCAAGCT AGAGATTTGTTCGAGAAGAGTCTTTGGACAGCCATAATTAATGGGCATGTGCAGTTTAATCGTCATAGGAGTGAAGCCTG ACAAGTTCATTGTGGTTTCTCTCCTTACATGTTGTGCTCAATCAGGAGCTCTGGAGCATGGCAGGTGGATTCATGATTAC GTAAATGAAAACAGAATCATGGTGGATGCGGTGGTTGGTACTGCCCTTATTAAAATGTATGCTCAAAGTGGATGTGTAGA GAAATCTTTGGAGGTTTTTAATGGATTAAAAGAAAAGGATACTGCCTCATGGACCTCAATTATTTGTGGACTTGCCATGA ATGGTAAGACAAACAAAGCACTGGAGCTGTTTGAAGCAATGGAAACATTGGGGGCAAAACCTGATGATGTTACCTTTATT GCTGTTTTGAGTGCATGTAGTCATGCAGGTTTGGTAGAAGAAGGCCGCAAGCTATTTCATTCCATGTCAAGTACATACCA TATGAAGCCAAATTTAGAACACTATGGGGGTTTCATTGATCTTCTTGGTCGAGCTGGACTGTTACACGAGGCAGAGGAGC TGGTAAGGAAGTTACCAGATCAAACTGATGAGATAATAGTTCCACTTTATAGAGCTTTGCTAAGTGCCTGCAGAACTTAT GGCAATATCGATATGGGTGAAAGGCTTGCTACAACACTAACAAACGTTAAATCTAGTGAGTCAAGCCCTCATTCACTTCT TGCTAGCATTTATGCTTCAGCTGACAGATGGGAAGATGTGAACAAGGTGAGAAGTAAGATGAAAGATTTGGGTATCAAAA AGGTTCCGGGTATCAAATAGGTGGGGCCTTTTCCCATTCTCTGACCAAAATTGGTCTGCAACATGGAATGGGTAATCAGC AATTGATGTGTAATCTTTTAAAATCCTAATCATTGATTTTTTGACTGGTGAACTGTAAGTCCAGTAAGGTTCGGTAACTT CTCTGCTCCCCTTGATGAAGCATTAATACACGTTTCGCTGGTATGTTGGTTGCTGATTGTGGATATTAATAATTATTTCA ATATTTTACCTGTATTAAGTATTAACACAAATCTGGTGGTTGGGTGGGGTGGGGTGGGGGGGGGGGGGGGGCTATGAAGA ACTGAAGCATGGTTTTTCCATACAAATATGATAAAATAGATTAGAGAACCTCTGAATCTAGAAATTTCATAATTTCTATG ACATCTGTGATTTTGAAAGTCATATCTATTATGTGGTCAGTTCAACAATGTGTATCAATATAGATGCCGATGACTCGTAA ATTTTACCTATTTTCACGCATTAAGGATACTGATAATGTGAAAGTTTTGTACTAAATTTTGAAAGTTTTGTTGTCCATTC TGATCATACTTACAAATTCATTCCTTCTGATTAATTACTGCATCATTTGTTTAAGAATTTGTCCATATAGCTTTTCTTGA CTATGGATTTTTTTGGATTATTTTCTTGTAAATATCTCGCTGGAGCCAGGAAACATCTTCTTGGGTGTTGTCAAGCCCTT AAATATAATTTTTCTTTCGTCTGGGATTATGTTCTTAGCTTAGAGCCTAGGCAGCCCTTCGGTATTTTTGGTATTGTTCT TTTATGTTACCTTATTGTCATCATCACTGTACTTCATTTCCTCTCTTTAATAACAGTTCCTTTTCTATAAAAGAACCACA GTTACTTATTACTTTTTCAATGATTTTTTTATCATCATTTACTGATGAATTTGTTGGATATCATTGTCTGTAGTTGGTGG AGCATTTTTTCCAGTCTTTTCTAAATACTTCAGGTATGACACTTCACATTCGCCAGGTATTAAAACCTAGAATCTAGTTT TTTTTTTTTGCTTTTGCTTACAAGTAGCTGCAGTCGTTGTTAGTAAACTGATCAGATTATGCATTAATCATCTGTGTGTA CTTTGATCAGATTACTTGAAGAAATCAAAGGAGGTGAATTTGTATTTCTCTATTCTTCTGCAGTTAGTGTGTGTGTATAT TGATCTGTATGATTCAGTAATGTTGAATAATTTATAATAATGTTGAATCTTGTAGTTGGCTCAATTGATAAAGAAAGGAT CTGTTAGAGTGGGTGATGTGGGCAAAGTTCTTTGTCAAGATTTGGATAAGTATTGCAGTCGAATAAGGTAAAATTTAGAG GGATCTTATTTTACCATAGTGGTTCACTTGATTGGCCAGTGTATTGCACGAGGTAGAAATCATTGATGATGTAGATAGAG GGGAGACTAAAACCTTATATTAATGATTATGACTTTAGGATGACTGGAAGTGTATGCTTTTGGCCTTTGGGCCTAAAATT TGACATAATGCGTACCAACACTGATGATGTTTTTTCTTTCAGTTGGAGTTAAGTGACCCTTAAAAGTCTTTTATTTAACA TGTGGTGGATCCAATCAAGTGATAATTGTGATTTCTTGCGCACTACACTATATTTCTTTTTCCTTGTTAACAGTTAGCAA TTGAGAGTGATATTGCGTATACAAATAAATATGTTCATATTACCTTTTGTATTTACAATTTTGCGAACACAAGTTAGCAT TTGCATTTTAGTATTGCAATCCACATGTGTTCTCCTGTAGGTAACACTTAATTTGCTTTATTATCTTGCAGCCTCCAAGA CTGGCTCTTAGCAATTGTCTATTACAGCATGCATTGGCCCTGGTATGGATGTTTAATTCGTACTTTTCATACTGTTTATG AGAAACCAGTAAGAAAAAAATGGTATGCAAACTAGTTTGAGAAAGTCTATATCTGATATGTGTTTGGTATATAAGCTTCA AAGAACCTGGATGTGTCTGTTTTAAAGCTAACTGTTGCTTAATCGAAATGTTTGAGAAAGTCTATTGTTTAAATGCGTTT CATGTGTTCTTACAACTTTTTGAAATAAAAAACAAAATCATATGAAAATTGTTGTTGTTGGAAAACAATGAACCAATTTA AGAACAGAGACTGAAATACATCTCTTTATTACTAACAATCTTGTTGCAAACACAACAAGATACTGACATGAAAGTTCCCC AATAAATACTAAAGCAATCATACATGAATATATATAATAGTGTAAGCCAAATAAATTAGAAGGATTGGCATTTCAAATCT CGCTTCCCCGTTTTGGTTGGACCATCACTTGAACACAATAAGATTAGGAAGTGCAAGATGGCCATCAGAGAAGTAAAATC AGCCTCGTTTGCCTTTGTTTCTTGATAAACACTAGAATCTGGAAAGAAATAGTAATATTCATTAATGATATTCACACATA TAATGATAAAATGTGCTGTGTGCGTGTGAATGTAAAGATAAAAATTACTTACATGATTTATCCCAAATAGTGAATCCGCA TTTCAAGCTTAATTGTACACTGGTGGTGGTGGAGAAGCATAGATGTAAACTGGTGGTGGAGGAGACTTCGTTGGTGGGGG AGGTGATTTGTAAATGTATGGGGGAGGGGGAGATGGTGATGGTGGTGGTGGGCTTATATAGTGGTAAGGAGGTGGAGGAG ATGGCGATGGTGGCGGAGGGGACCTGTAGTAGTACGGAGGATGAGAAATATGGGATGGTGGAGGAGGACTCTTGTAATAG TATGGAGGTGGAGGTGATGGGGATGGCGGTGGAGGTGATTTGTAGTAGTAGGGTGGTGGTGGAGATGGTGATGGTGGAGG TGGAGATTTGTAGTAGTAGGGGGGAGGAGGATAGGGAGATGGTGGAGGGGGACTCTTGTAGTAGTATGGAGGCGGAGGTG ATGGGGATGGTGGTGGGGGAGATTTATAATAGTATGGAGGGGGAGGAGATGGTGATGGTGGGGGTGGTGACTTATAGTTG TATGGAGGGTGTGAGATTTCTTTGGGTGGAGGAGGAGATTTATAATAGTAAGGTGGGGGTGGAGATGGTGACTTATAATA ATATGGTGGAGGAGGGGATGGTGATGGTGGGGGTGGTGACTTATAGTAGTATGGAAGGTGTGATGTTTCTTTAGGTGGAG GGGGGGATTTATAATAGTAAGGTGAAGGAGGGGATGGTGATGGTGGGGGTGGTGATTTATAGTAGTATGGAGGGTGTGAG ATTTCTTTTGGTGGAGGGGGGGATTTATAATAGTAAGGTGGAGGAGGGGATGGTGATGGTGGGGGTGGTGATTTATAGTA GTATGGAGGGTGTGATATTTCCTTAGGTGGAGGGGGGGATTTGTAATGGTAAGGTGGAGGTGGGGATGGTGATGGTGGGG GTGGTGACTTATAGTAGTATGGTGGGTGTGATATTTCTTTAGGTGGAGGGGGGGATTTGTAATAGTAAGGTGGAGGAGAG GATGGTGATGGTGGGGGTGGTGACTTATAATAATATGGTAGTTTAGATACCGGTGATGGTGGAGGTGGAGACTTGTAATA ATAAGGAGGTGATGATGATTTGACGGGAGGAGGAGGTGACTTATAGTAATATGGAGGAGAATAATAGTGGAGTGGTGGTG GTGGTGGTGACTTATAGTAGTAAGGAGTTGGGGAAGGTTTGGACTTTTCACATTCTTTAAAGTGCTTCTTTGATGCATAA GCAAATGGCTTTGCCTTGAGCACAACCTCATACTTGTTATTGGATTTCAGCTTCAAGTTGGTTCCCTTATTCAGTTTAGT AGGTAGGTCGAAGGGTGAGTGTTTAGGTGGAGCATAAAGCACAGCCTTGCACACTGTCGGGCCATATTTTACATAGTCAA AGTCCTTAACTGTGATGCTGTACTTGCCATTGCTCTTTGTTTTACCATAGGCTTTGATGATATTCTTCCCTGCTTTGCAT TTCACCTCCACAATGGCACCTGCCCCATAGCAAAATTAATTGCAATTTTAAACATAAATGAAGTCGAAGAAACATATTAT ACAAGACTACATTGTTATCAAAGATCTGCTAGTTAAACTATCCTTGTTAGTTGTCATACAACATATTGATATTAGGTAGG GTTATTAAAACTTAACATGTCAACTAATGTATCATTGCCATATGATTTTTTTCTTTGGATATTACAGCTTGCATCCAATT CTAAAAATTATATTCTCTGCTTTAAAACTTGGAGTTAAGTAGGTTTCAAGAGTTGATTTTTCTGTTGTGAGAGTCATATA TTTCGTATAATTAAATATAGTTTATTGTTTTGTCAAATTAAAGATTATGAGTATGATAAAATATATCTACATATGTAATA ATAATAATAACTACTATCATAATTTTGAGATGCATAGCAAAGCCTCATTTACATATTTCAAATTATATTCTAATCCTAAG GATGAAGAATTAAATTCATCGTACCTTTGAGGTGTTTCTTGTTATGAGACTTTTCAGGATACTCCCAGTCATAGCACCTG TAGCTGTAGACTTTACCAACAACCTTCACAATCAATGGGTGGTGGTTGGGATGTGGGTGAGGATACACAACTGGTGGAGG AGGAGAATTATAGTAGTATGGTGATGGTTGGTGCTTGGGTGGTGGTGGAGACCTGTAATAGTATGGTGGATGGGGTACAG GTGATGGAGGAGGAGGGGACTTGTAGTAGTAGTGTGGTGGAGGAGATGGTGAAGGTGGTGGTGGAGACTTGTAGTAGTAA GGTTGGGGAGGGGAGGGTGATGGAGGTGGAGGAGATTTGTAGTAGTAAGGAGGTGGAGGTGAAGGAGAGGGTGGCGGAGG AGACTTGTAGTAGTATGATGGAGACTTGTGTTCATATGGAGGTGGAGGAGACTTGTAGTAATAGGGTGGTGGAGGAGATG GTGAAGGCGGTGGTGGAGACTTGTAATAGTAAGGTGGGGGAGGGGAGGGTGAGGGAGGTGGGGGAGATTTGTAATAGTAA GGAGGTGGAGGTGAGGGAGAGGGTGGTGGAGGAGATTTGTAGTAGTAAGGAGGTGGAGGTGAAGAGGGCGGTGGAGGGGA CTTGTACAAGTAAGGAGGTGGAGGTGATGGGGAAGGTGGTGGTGGTGATTTATACTCATAGGGAGGTGGGCGTGATGGTG AAGGAGGTGGAGGTGACTTGTATTGGTAAGGTGGATCTTTATGCTCAATTGGTGGTGGAGACTTATAAATGTACGGAGGT GGAGGTGATGGTGAAGGAGGTGGAGGTGACTTGTATTGGTAAGGTGGATCTTTATGCTCAATTGGTGGTGGAGGTGGTGG AGACTTATAAATGTATGAGGGTGGAGGTGATGGTGAAGGAGGTGGTGGTGATTTGTACTCATAAGGTGGTGGCGGAGGGG AAGAGTAAATATAACCATCAGCAGCAGCAGAAACCACAGTTGTAGAGATGAAAACAATGGCCAATGCCATAGTCATTTGT GGCCAGAGGCGACCCCTAACGGGGTTTCTGGCCCTACCAGTCATGGGTGGAAGAAGAAAACTGGTTACCCTCTTGCCAAT GCTTTTGATAATTAGATCCCAGTTGATATTCTTAGAAGAGGGGGATTCAGATAGTGAAAGAGTTTGGTGTTAGTGATGAT TGAGAAAAGGTGCATGATAATTAGTACTTATAGTGAGAGCAAGTCATTGTAATGAGGGACCAATTCAAAATACTTAGCTG GTCTCATTTTGATTTCAATGTTTTATATATTATGTTTCCCCGGCAAGCAGGCCACTTCTTTCCCATTTCTCCAAATGGCC ATAATAATGTCTAAAACCATTCTCTATATTCTAATTTCCAGCTACTAATTATAAGGCAAATTAGCACCTTGACGACATGT AAGTCCAAATTTACAAGTAAATGAATAATGTATTTAGCATCACTTATCGATGAGTAGTCATGAGTTTCGTTCAAATCGTT GATGGCAGCTATTGCAAGATTTGTATTAATTCTTTTCTTCTATGTTGTTTAAGCGTGATGACATT
CDS sequence (LotjaGi6g1v0019500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCATGTGCAGTTTAATCGTCATAGGAGTGAAGCCTGACAAGTTCATTGTGGTTTCTCTCCTTACATGTTGTGCTCA ATCAGGAGCTCTGGAGCATGGCAGGTGGATTCATGATTACGTAAATGAAAACAGAATCATGGTGGATGCGGTGGTTGGTA CTGCCCTTATTAAAATGTATGCTCAAAGTGGATGTGTAGAGAAATCTTTGGAGGTTTTTAATGGATTAAAAGAAAAGGAT ACTGCCTCATGGACCTCAATTATTTGTGGACTTGCCATGAATGGTAAGACAAACAAAGCACTGGAGCTGTTTGAAGCAAT GGAAACATTGGGGGCAAAACCTGATGATGTTACCTTTATTGCTGTTTTGAGTGCATGTAGTCATGCAGGTTTGGTAGAAG AAGGCCGCAAGCTATTTCATTCCATGTCAAGTACATACCATATGAAGCCAAATTTAGAACACTATGGGGGTTTCATTGAT CTTCTTGGTCGAGCTGGACTGTTACACGAGGCAGAGGAGCTGGTAAGGAAGTTACCAGATCAAACTGATGAGATAATAGT TCCACTTTATAGAGCTTTGCTAAGTGCCTGCAGAACTTATGGCAATATCGATATGGGTGAAAGGCTTGCTACAACACTAA CAAACGTTAAATCTAGTGAGTCAAGCCCTCATTCACTTCTTGCTAGCATTTATGCTTCAGCTGACAGATGGGAAGATGTG AACAAGGTGAGAAGTAAGATGAAAGATTTGGGTATCAAAAAGGTTCCGGGTATCAAATAG
Protein sequence (LotjaGi6g1v0019500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGMCSLIVIGVKPDKFIVVSLLTCCAQSGALEHGRWIHDYVNENRIMVDAVVGTALIKMYAQSGCVEKSLEVFNGLKEKD TASWTSIICGLAMNGKTNKALELFEAMETLGAKPDDVTFIAVLSACSHAGLVEEGRKLFHSMSSTYHMKPNLEHYGGFID LLGRAGLLHEAEELVRKLPDQTDEIIVPLYRALLSACRTYGNIDMGERLATTLTNVKSSESSPHSLLASIYASADRWEDV NKVRSKMKDLGIKKVPGIK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 80 | 78 | 1.3E-5 | ||
| ProSiteProfiles | 14 | 48 | 35 | 6.171 | ||
| PANTHER | 17 | 248 | 232 | 1.6E-60 | – | |
| ProSiteProfiles | 49 | 79 | 31 | 7.75 | ||
| Pfam | 79 | 127 | 49 | 1.9E-10 | ||
| ProSiteProfiles | 80 | 114 | 35 | 11.4 | ||
| Gene3D | 81 | 256 | 176 | 6.0E-31 | ||
| TIGRFAM | 83 | 115 | 33 | 3.9E-7 | ||
| ProSiteProfiles | 115 | 145 | 31 | 8.528 | ||
| TIGRFAM | 117 | 151 | 35 | 6.6E-5 | ||
| ProSiteProfiles | 151 | 181 | 31 | 7.048 | ||
| Pfam | 155 | 178 | 24 | 0.16 | ||
| ProSiteProfiles | 220 | 254 | 35 | 7.18 | ||
| Pfam | 226 | 252 | 27 | 1.4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0019500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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