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LotjaGi6g1v0021400.1

Overview

Field Value
Gene ID LotjaGi6g1v0021400
Transcript ID LotjaGi6g1v0021400.1
Lotus japonicus genome version Gifu v1.2
Description DNA repair family protein; TAIR: AT5G57450.1 homolog of X-ray repair cross complementing 3 (XRCC3); Swiss-Prot: sp|Q9FKM5|XRCC3_ARATH DNA repair protein XRCC3 homolog; TrEMBL-Plants: tr|A0A1J7GCW2|A0A1J7GCW2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0021400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:3953365..3954559) extracted from Lotus japonicus Gifu genome v1.2.

ATTGAAAACACAATCAATCACTTTTTAATTTCATACAATAAATGAAATAAAAATGGAAAAGGAGCAAAAAGTAAGAATAG GGTTCATTTCAATCGTCAAGGGATTCAAATCCAAGTATGAATCGCGATGAGAGCAGAGAATCTGTTGCAGCAGCGAACGG AGAAGTGCACCCTGGGGTGTCCCGTACTGGATCGCTTCCTCCGCGGCGGCGTACCCTGCAACTCCGTCACTGAACTCGTC GGCGAGAGCGGTTCCGGCAAGACCCAACTCTGCCTCCAACTCGCCCTCTCCGCTCAGTCCACCCTCTACATCTACACCGA GTTCCCTTTCCCCATCCGCCGCCTCCACCAGCTCTCCCAACGCGCCGCCGTCGATGATCCCCGTTCTCCCTCCTTCGACC CCTGCGACAGCGTCTTCCTCCGAAGCGTCAGCTCCGCCAACGAACTCCTCCGCATCTTCCCCCAAATCGAGGACTTCCTT TCCTTCCGGCGGACCCGGTTGCCGGTGAGTGTCATCGTGGTGGACTCAATTGCCGCCCTCTTCCGCTCCGAATTCGACAA CAACGCCGTGGACCTCCGGCGAAGGTCGTCGCTGTTCTTCAAAATCTCCGGGGAGTTGAAATCTTTGGCGAAGAGGTTTG GGTTGGCGGTGGTGGTGACGAATCAGGTGGTTGATTTGATCGGTGATGAGATGATGATGATGAACAGTAACAACGAGATG TGTACGTCGGGGAGAAGGGTTTGCCCGGCGCTTGGTCTGGCGTGGGCGAACTGCGTGAACTCGAGGGTGTTCTTGTCGAA GGAGGTTGACGACGGCGGCGACGGTGGAGTCACCAGGACGAGGAAGCTCAGTGTTGTGTTTGCTCCTCACTTGCCTCAAT CCAGTTGCCAGTTTGTCATCACCGGAGATGGCGTTTTTGGTGTAGATCATCAAACCCTACAAGGAAGGGGAGCCAATGTG TAAATTATCTATAATTATTGTTATTATTACTGATATTTCTTTGTTATTATAATTTATTTATTGTTCAAGTTTTGATATGA AAAGTTGAAATCATTGGAAAGTATATAGAAGCAATCTTATTCCATGATAGAGTTTGGAAAATGATGGGCAAACACTTTTG GGAAGTAGACAACACACCTAGAGTCTACAGGTAGAGTGATATAAGAGAAAAAAGATAAAGTGATAAATATAACGG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0021400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGAGCAGAGAATCTGTTGCAGCAGCGAACGGAGAAGTGCACCCTGGGGTGTCCCGTACTGGATCGCTTCCTCCGCGG CGGCGTACCCTGCAACTCCGTCACTGAACTCGTCGGCGAGAGCGGTTCCGGCAAGACCCAACTCTGCCTCCAACTCGCCC TCTCCGCTCAGTCCACCCTCTACATCTACACCGAGTTCCCTTTCCCCATCCGCCGCCTCCACCAGCTCTCCCAACGCGCC GCCGTCGATGATCCCCGTTCTCCCTCCTTCGACCCCTGCGACAGCGTCTTCCTCCGAAGCGTCAGCTCCGCCAACGAACT CCTCCGCATCTTCCCCCAAATCGAGGACTTCCTTTCCTTCCGGCGGACCCGGTTGCCGGTGAGTGTCATCGTGGTGGACT CAATTGCCGCCCTCTTCCGCTCCGAATTCGACAACAACGCCGTGGACCTCCGGCGAAGGTCGTCGCTGTTCTTCAAAATC TCCGGGGAGTTGAAATCTTTGGCGAAGAGGTTTGGGTTGGCGGTGGTGGTGACGAATCAGGTGGTTGATTTGATCGGTGA TGAGATGATGATGATGAACAGTAACAACGAGATGTGTACGTCGGGGAGAAGGGTTTGCCCGGCGCTTGGTCTGGCGTGGG CGAACTGCGTGAACTCGAGGGTGTTCTTGTCGAAGGAGGTTGACGACGGCGGCGACGGTGGAGTCACCAGGACGAGGAAG CTCAGTGTTGTGTTTGCTCCTCACTTGCCTCAATCCAGTTGCCAGTTTGTCATCACCGGAGATGGCGTTTTTGGTGTAGA TCATCAAACCCTACAAGGAAGGGGAGCCAATGTGTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0021400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRAENLLQQRTEKCTLGCPVLDRFLRGGVPCNSVTELVGESGSGKTQLCLQLALSAQSTLYIYTEFPFPIRRLHQLSQRA AVDDPRSPSFDPCDSVFLRSVSSANELLRIFPQIEDFLSFRRTRLPVSVIVVDSIAALFRSEFDNNAVDLRRRSSLFFKI SGELKSLAKRFGLAVVVTNQVVDLIGDEMMMMNSNNEMCTSGRRVCPALGLAWANCVNSRVFLSKEVDDGGDGGVTRTRK LSVVFAPHLPQSSCQFVITGDGVFGVDHQTLQGRGANV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF005856
1 269 269 4.8E-47
IPR016467
PANTHER
PTHR46487
6 269 264 6.5E-98 –
Pfam
PF08423
6 264 259 1.1E-37
IPR013632
Gene3D
G3DSA:3.40.50.300
7 264 258 5.3E-62 –
ProSiteProfiles
PS50162
10 181 172 43.042
IPR020588
SUPERFAMILY
SSF52540
12 264 253 3.12E-37
IPR027417
CDD
cd01123
15 263 249 6.65878E-72
IPR033925

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006281
Biological process DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Subterm of
GO:0008094
Molecular function DNA-dependent ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0021400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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