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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0023200 |
Transcript ID | LotjaGi6g1v0023200.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Potyviral VPg interacting protein 2; TAIR: AT5G48160.1 potyvirus VPg interacting protein (DUF1423); Swiss-Prot: sp|Q84N37|PVIP_PEA OBERON-like protein; TrEMBL-Plants: tr|V7BM29|V7BM29_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0023200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:4332173..4334316) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTCCCTATGCGTCAACAGTCACAGGTTGGAGGGCTACAGACATCACTGTCTCTAGTTCCTTCGGATCCTCACCTCTC TCCTGATGAACCTAGATCAAACTCTGACCGTGAATCACCGACTGAAAGTGCCAGTTCTCAAGAAACTTGGCCTACAGCTG ATGCCCCTGCAGCGAAGAAGGTGGAGAATGGAAAAGCAGAGATTAATTGCATTGAACAGTCAGTTATTCGTCGTGTTTCT AGCGCAGACAAAATTACTCTCCAGGACATTGCAAGAGAAAGTGTTGATATAATCTGTGAAAAAATGCATCGCCTTCCTGA GGAATTTCTAGAAGAGATGAAAAATGGACTTCGTCTTATCCTTGAGGGAGGTAATGGTTCACAACATAGAGAGGAATTTT TCATTTTGCAGAAACTTGTGCAGAGTAGAACTGATTTGACACCCAGGACACTGGTTAGAGCCCATCGTGTGCAGATTGAA ATCCTTGCTGCAATAAATACTGGAATTCAGGGTTTTCTGCATCCTAGCATCAGTCTATCACAGACTTCCCTGATAGAAAT CTTTGGGTATAAGAGATGCAGAAACATAGCATGCCAAAACCAGCTTCCGGCCGATGATTGTACCTGTGAAATATGCACCA ACAACAATGGTTTCTGCAATCTTTGCATGTGTGTGGTCTGCAACAAGTTTGACTTTGAAGTGAATACATGCCGCTGGATT GGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGTGAGCAACTTATTTGCATGGGCCCTTCCGTGAA GAGCGGAGCAGGACCGAGTGAAATGGTTTTTAGGTGTCAAGCATGCAATAGGACGTCGGAACTGTTAGGTTGGGTTAAAG ACGTCTTCCAGCATTGTGCGCCATCTTGGGATGGAGAGGCCTTCGTGAGGGAACTTGATTATGTAAGTAAGATCTTCCAT GTTAGTAAAGACCCCCGAGGGAGGAAGCTATATTGGAAGTGTGACGATCTCAAGGAGAAATTAAGAAGCAGAAAAATGGA CTCAAAGGCCGCTTGCAGGGCAATATTGATGCTTTTCCAAGGTACTAGAAATATAGTTTTTCTTCAATTTCTGCTTTGTT ATATAATAAGGCAATACCATGCTTTGCATTTTTATGTTTCCTTCACTAAATTACTTTTTGAATTTGATTATGTCTAAAAC TCCAAAACTGGAGATAGCAATGCTAAAGAGTGCTTTTAGACTCTAATGCATTGTATGTTTTCTTGGTTCTATGAATGATT TCGGCGCCACCTGACCTGATTGTCTCTTCTTTGAAACCTGAATTTAAACAAATGGGTGGCCATGGCAAATTGACATTTGA AAATCAGGCATCATTGATAGTGTTAATGCTATAATTAATACTTGTCTTATTTTTGTTCAAGGCAATATTTGATGTGGGGG AATGCATGACTATAATTATAATTATATGTTCTTCCTCTTGTTCTAACTAATCTATTGCCCTAAATGAAGAGCTTGAGGTG GACTCTCCGAAAGGCCTTGAAAATGGAGAAAGTGGAAGGGTGGTTGCTCCACAGGATGCCTGCAACAGAATTGCGGAAGT GGTTCAGGAGGCTATAAGAAAGATGGAAATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCTTGGCTCTCG ATGCTTGTGATCGTGAACTAGCAGACAAGGCCAGGGAAGTGGCAGAACTAAAGATGGAAAGGCAGAAAAAGAAGTCGCAG GTAGAAGAACTCGAGAAAATTGTGAGGCTTAAAAATGCAGAGGCTGACATGTTCCAATTGAAGGCTAACGAGGCTAAAAG AGAAGCTGAGAGACTTCAGAGGATCGCCCTTGCCAAGCAAGATAAGTCAGAGGAAGAATTTACCAGCAACTACCTGAAAC AACGTTTAAATGAGGCTGAGGCTGAGAAGCAATATCTGTATGAGAAAATAAAATTGCAGGAGAGTTCTCGTGTTTCACAT AGTGGTGGTGGTGGTGGTGGTAGCAGCGGCGGTGATCCCTCTCAAATACTGATGTATTCCAAAATTCATGATCTGCTGTA CAATGTTCCTCCTAAGGCTGACAGTCAAGCTAATTTACGCCACCCTTTCCGGACAAATCCCTGA
CDS sequence (LotjaGi6g1v0023200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCCCTATGCGTCAACAGTCACAGGTTGGAGGGCTACAGACATCACTGTCTCTAGTTCCTTCGGATCCTCACCTCTC TCCTGATGAACCTAGATCAAACTCTGACCGTGAATCACCGACTGAAAGTGCCAGTTCTCAAGAAACTTGGCCTACAGCTG ATGCCCCTGCAGCGAAGAAGGTGGAGAATGGAAAAGCAGAGATTAATTGCATTGAACAGTCAGTTATTCGTCGTGTTTCT AGCGCAGACAAAATTACTCTCCAGGACATTGCAAGAGAAAGTGTTGATATAATCTGTGAAAAAATGCATCGCCTTCCTGA GGAATTTCTAGAAGAGATGAAAAATGGACTTCGTCTTATCCTTGAGGGAGGTAATGGTTCACAACATAGAGAGGAATTTT TCATTTTGCAGAAACTTGTGCAGAGTAGAACTGATTTGACACCCAGGACACTGGTTAGAGCCCATCGTGTGCAGATTGAA ATCCTTGCTGCAATAAATACTGGAATTCAGGGTTTTCTGCATCCTAGCATCAGTCTATCACAGACTTCCCTGATAGAAAT CTTTGGGTATAAGAGATGCAGAAACATAGCATGCCAAAACCAGCTTCCGGCCGATGATTGTACCTGTGAAATATGCACCA ACAACAATGGTTTCTGCAATCTTTGCATGTGTGTGGTCTGCAACAAGTTTGACTTTGAAGTGAATACATGCCGCTGGATT GGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGTGAGCAACTTATTTGCATGGGCCCTTCCGTGAA GAGCGGAGCAGGACCGAGTGAAATGGTTTTTAGGTGTCAAGCATGCAATAGGACGTCGGAACTGTTAGGTTGGGTTAAAG ACGTCTTCCAGCATTGTGCGCCATCTTGGGATGGAGAGGCCTTCGTGAGGGAACTTGATTATGTAAGTAAGATCTTCCAT GTTAGTAAAGACCCCCGAGGGAGGAAGCTATATTGGAAGTGTGACGATCTCAAGGAGAAATTAAGAAGCAGAAAAATGGA CTCAAAGGCCGCTTGCAGGGCAATATTGATGCTTTTCCAAGAGCTTGAGGTGGACTCTCCGAAAGGCCTTGAAAATGGAG AAAGTGGAAGGGTGGTTGCTCCACAGGATGCCTGCAACAGAATTGCGGAAGTGGTTCAGGAGGCTATAAGAAAGATGGAA ATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCTTGGCTCTCGATGCTTGTGATCGTGAACTAGCAGACAA GGCCAGGGAAGTGGCAGAACTAAAGATGGAAAGGCAGAAAAAGAAGTCGCAGGTAGAAGAACTCGAGAAAATTGTGAGGC TTAAAAATGCAGAGGCTGACATGTTCCAATTGAAGGCTAACGAGGCTAAAAGAGAAGCTGAGAGACTTCAGAGGATCGCC CTTGCCAAGCAAGATAAGTCAGAGGAAGAATTTACCAGCAACTACCTGAAACAACGTTTAAATGAGGCTGAGGCTGAGAA GCAATATCTGTATGAGAAAATAAAATTGCAGGAGAGTTCTCGTGTTTCACATAGTGGTGGTGGTGGTGGTGGTAGCAGCG GCGGTGATCCCTCTCAAATACTGATGTATTCCAAAATTCATGATCTGCTGTACAATGTTCCTCCTAAGGCTGACAGTCAA GCTAATTTACGCCACCCTTTCCGGACAAATCCCTGA
Protein sequence (LotjaGi6g1v0023200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPMRQQSQVGGLQTSLSLVPSDPHLSPDEPRSNSDRESPTESASSQETWPTADAPAAKKVENGKAEINCIEQSVIRRVS SADKITLQDIARESVDIICEKMHRLPEEFLEEMKNGLRLILEGGNGSQHREEFFILQKLVQSRTDLTPRTLVRAHRVQIE ILAAINTGIQGFLHPSISLSQTSLIEIFGYKRCRNIACQNQLPADDCTCEICTNNNGFCNLCMCVVCNKFDFEVNTCRWI GCDLCSHWTHTDCAIREQLICMGPSVKSGAGPSEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEAFVRELDYVSKIFH VSKDPRGRKLYWKCDDLKEKLRSRKMDSKAACRAILMLFQELEVDSPKGLENGESGRVVAPQDACNRIAEVVQEAIRKME MVADEKMRMFKKARLALDACDRELADKAREVAELKMERQKKKSQVEELEKIVRLKNAEADMFQLKANEAKREAERLQRIA LAKQDKSEEEFTSNYLKQRLNEAEAEKQYLYEKIKLQESSRVSHSGGGGGGSSGGDPSQILMYSKIHDLLYNVPPKADSQ ANLRHPFRTNP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 61 | 61 | - | – | |
PANTHER | 1 | 558 | 558 | 6.0E-301 | – | |
MobiDBLite | 1 | 22 | 22 | - | – | |
PIRSF | 1 | 558 | 558 | 1.4E-246 | ||
PANTHER | 1 | 558 | 558 | 6.0E-301 | ||
MobiDBLite | 38 | 52 | 15 | - | – | |
PRINTS | 101 | 123 | 23 | 8.9E-77 | ||
PRINTS | 143 | 158 | 16 | 8.9E-77 | ||
PRINTS | 158 | 173 | 16 | 8.9E-77 | ||
PRINTS | 184 | 205 | 22 | 8.9E-77 | ||
Pfam | 193 | 316 | 124 | 1.6E-40 | ||
CDD | 223 | 282 | 60 | 5.52839E-29 | – | |
SMART | 223 | 283 | 61 | 0.0014 | ||
PRINTS | 230 | 250 | 21 | 8.9E-77 | ||
PRINTS | 303 | 322 | 20 | 8.9E-77 | ||
Pfam | 411 | 550 | 140 | 8.3E-53 | ||
Coils | 417 | 486 | 70 | - | – | |
PRINTS | 446 | 466 | 21 | 8.9E-77 | ||
PRINTS | 485 | 507 | 23 | 8.9E-77 | ||
MobiDBLite | 519 | 539 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0023200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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