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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0024400 |
| Transcript ID | LotjaGi6g1v0024400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 3-ketoacyl-CoA thiolase; TAIR: AT5G47720.1 Thiolase family protein; Swiss-Prot: sp|Q9FIK7|THIC2_ARATH Probable acetyl-CoA acetyltransferase, cytosolic 2; TrEMBL-Plants: tr|M5WS77|M5WS77_PRUPE Uncharacterized protein; Found in the gene: LotjaGi6g1v0024400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:4452439..4459484) extracted from Lotus japonicus Gifu genome v1.2.
GGCTTAGTGATTTAATTTAACTTACCTAAGTGTTTGATATCTAATTTTAGCTGGAACCCGAGTCATCACAAACGATGAAC AAGCCTGCAGCAGCAAGTGACATTTATCATAAAAAAATTCAAAGACTTGGATGCTGTCTCATTCATATTCAAAACAAATG CGGACAATACCATTTTCTTCCCCCATCTTCTGTCTTTCTGTGTCTCAGTCTCTGCATTTTCCAACCACTCCAACAATAGT AAGCACCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTTAGATACTTTCTGATACATCCTTTGTGTTTGTTTGTGATCTC TGTTTCAAGATCAACAGTAAGGAGAGAATAAGTATAGTTTAATAAATTCTGTTAAATTCATGACACTTCCAATTTTTAAG CTGTTTGGTCAATGTTTTCACTTTTGTTTTTTACTAAATTTGACTGGAGAAAAATTACACATGCAAAGAATAACCAGTGT ACTTATGTTAAATATATTGTGATGTTTGTTTGTGTGTGGAAGATCATATATTTGATGTTTGGATTTACAGATTCCATTTT CATCTGTCAATGGCTCTGGCACCTGTATCTTCAGACTCTATAAAGCCCAGAGGTCTTCATCATACATTTTATTCTTTGAT GTATACATAAGTACATACTATTATTGCACATCAGAAGTTTGATGTTTGGATTTACAGATTTCATAGTTTCCTTTTCTTTT TTAAACTCTCAGATTAAGAGATGGTTTTGGTTGATGTTTTTTTCTTTTTTAATTTCCAACAGATGTATGCATTGTTGGTG TTGCGCGCACACCGATTGGTGAGTTTCACGGTGCTCTGTCATCTATTCCGGCAACCAAGCTTGGCTCTATAGCTATTGAA GGTAAGTGTGCAGACACTTATGTTTAAGTCCTCAAATCCTTCTAATTGCATTTTATAATTGTTTTAGTTTTAGTGTATGT GTGTGTTTATCACCATAATTAGATATATGTTAGTATTTTATTATCTACATTCAAGCTAACTTTTACAATATTGATTCTCT CAAATGATTTGAAATTTGTGTTTTGATCATTTGAAATTTAAGAGAACTTTCATTGCATTTGAACAATTCTTAGCATGTTT GGATCAGTTTCTAAATTCTCATAATCCGTTCTGACACTTAGACACTACTTATAGTTTCTAAATTCTCATAGTCCTCTTTG GAATTGATTATAGCTTTAGAATTAACTGTAGAAGGATTTCTGGTCATTCAATCTGAATTTAACCGGAAAAGAAAACATTT CTGAAAATTCTCTTGGATTTATTTTTCTGAAGCTGCTCTTAAAATGGCGAAAGTTGATCCATCACTTGTACAAGAAGTGT ACTTTGGGAATGTTTTCAGTGCTAATTTGGGGCAAGCTCCTGCGAGACAAGCTGCTCTTGGAGCAGGAATTCCCAACTCA GTTGTCTGCACTACTATTAACAAACTTTGTGCATCAGGATTGAAAGGTGTGTGTTTGATCATAATAAAAACTTTGTTTTG TATTATTTTAAGAACAAGAATATTAAACTTGTTCTGGTATATCACAGCTACAATTCTTGCTGCACAGAGTATTCAATTAG GCATAAATGATGTGGTTGTGGGTGGTGGCACGGACAACATGTCTAATGTGCCTAAGTACTTGCCACATGCAAGGTTAAAA CTTAAAACTACCCTTTATATATGCTAATATTTGCTTGATTGCTTCTTCTATTTCAATGAGCTGATCCAATGCTAAGTGCA TGTTTGGAAATTCTTCTACAATTGATTTTAAAGCCTAACTTAATTCTGGACACAAGCTTCTATTAGTAGCTTCTGCGTGC CAGAATTGATTCTGAAGAAAAATAAACTGATTTAAACATGCTGTAAAATTCAGGAAAGGATCCCGCCTTGGACATGAAAC GGTTATTGATCCAATTTTGAAAGATGGTTTGATGGATGTGTATAATCAAATTGACATGGTAGACTGTGCTGAACTGTGTG CAGAAAAATTTTCAATATCAAGAGAAGAACAGGTATTTTAGAAGAGTTAATTTAGTCACAACGGTTTTAACATGATCATT GTTATAATATACTTGCTTTGATTTCTTTATCTTCTCCTCAGGATGCCACTGCAATTTTGAGCTATGAGCGTGGAATTGCT GCGCAGGAATGTGGTGCTTTTAAATGGGAAATTGTTCCAGTTGAAGTCTCTGGGGGAAAGGGAAAACCTTCAATTATTGT TGATAAAGATGAAAGTCTAGATAAGGTAATCAACCAAAAAAGTTGAGCCATGGTAAATGTTGAATAACGTGGTAGGAAAA CATACAAATATTACAATTCAAACACTTTTTAAGTATTAAATATTCTTTATAGCCTGAGTATTAAATGTAAGAACATAGTT GTGTGTAAGAATATATATAGTTCTGTCATCTGAGTTGTAACCTTTATTGTACTATTGGTGTTAAATCTGCAAGTAAGTTC CTTTCTCGTTAAGGTTGTCTTTGCATGAAATTTCTTATGTTTTCTCATTTTGTATGCTAGTTTGATGCTGCCAAGTTGCG TGAACTTCCACCAGCTTCCGAGAATGGAGGTTCTATTACTGCAGGCAATGCTTCTAGTATGGGGTGATGATTTTATCCGA AGAGAGCCGTGTTATATGTCACGAGTGTTTTCTTTTTTATAAAACAAATTACTCACAAATGACTTGGATAACTTGTCTCT CTTGTTTATCATATCAAAATTGTGAAGATTAAAGAGGAAATTGCATAACAGAAATGGAAATTACTCTTTCTCACAGTGAT GGTGCTGCTGCACTAGTTTTGGTGAGTGGAGAGATAGCTCTGAAGCTTGGGCTTCAAGTTATTGCAAGAATCAGGGGATA TGCTGATGCTGCTAAGGTACATTAAAACGTGAATAAATATGGGAAAAGACATTAGGCCTTGGAAAGTCTGAAATGGAAAA AATCAAAGTTCAGAATGTTTTTAATATACATAATTCATGACTTCAATCTCATATGACTGAGCTATATATTATACACAGGC ACCAGAGGATTTTTCAACAGCTCCAAGTCTTGCCATTCCCAAAGCTCTTTCCCATGCTGGGTTGGATGCTTCAGAAATTG ATTTCTTTGAAATTAATGAAGCATTTTCGGTAGGATTTCTTTGAATGTAATATTTCTTTTTGTGCTAATTTTTTGTGGTG ATAAATTTAATTCTTCATATTGCTCACTGTAGGTTGTGACTCTTTGCAATCAGCAGCTTCTTGGAATTAATTCAGTGAGT TGCCCAACTTGTTAAAAGAGAGAGAAAAAAGAGAACCCTGTACTGAAAACCTTGTTATTTTCTATACGGTTTCCCATTTC CTGTTTTCATTTTCAAAGAAAACAAAAAATAAAGTTGAAAACAGGTTTAGTTAATATTTAGAAAATGTTTTCTTAGAAAA TATTTTTTTAAATATGATCAAAACAGAAAAACTATGAAATGAGTTGCCACCACCATGGTCACCATTGTTTTCATATTCTT TAGTTCTCTCATTTTAGTGAAGTAACTTTGTTAATTTGCAGGAAAAACTAAATTTGCATGGCGGAGCTGTATCCTTGGGG CATCCTCTTGGTTGCAGTGGGGCTCGTATCCTGGTGACACTTTTAGGGGTATGTTTGGCAGAACACAGTAGTATAATATT AAGGTCATGTTTGGAAGAGTAATTTGAGCTTATCTTATGCCATAAGCACTTATAGTGTTTGGAAGAGTTTATGTAGATAG CTTATGCATATCTATAAGCTGTTTTTTTTTTTTGACAGGATATCTATAAGTTGTTTTGAGCTTATTTTCATAAATTGTAT TCATAATAGCATATGAATAGCATTAGCAATAAGGGCTTATGGGTCATATGTGCGTAATTAAGCTGTTTTTTTCCCAACAC GCTTCATATGTTGTTTACCCAATACCTTAAGCTTTTTCATGGCATAGTTTAAGAGACTCTATGCCTAAGTGGTCAAGCGT TCGATCCTTGTTGCGTGTCATTGACACTAGGCTCTTGCGTGAGGGGTATTAGAAGGATAATTTTAGATTATTCATGTTTT TCAAAATAAAAAATTATTCATCTGTAATTTACTTGAAAGATTCATTTGTTCATGTCATGTTTCAGTTTATAATTCAATAC ATTTTTTTTATATAAATTCTTTATTGTTCTTAATATGTTCCATATGTATTAATGGTTCTTTTTCCATACAGGTCCTGAAG CGTAACAATGGGAAATATGGAGTTGGTGCTTCTTGCAATGGAGGTGGTGGAGCTTCTGCCCTTGTTTTGGAGCTTGTGTA AGGTCCTTTTCAAGTAAAGTCAATGTGGCTGCAAATTTAGTTCAACAAAGTCTACCTTCCCTTTATCTTATTTTATGACT TTGTTTGAATAAGCACAGTTTTAATATAAAAAGGGATTCCAAATAAGTTATTAAATATTTGGATGATATTTGTACAAGGT ACAAGCACTTATTTAAATAATAAGGGGCATTTGGATAAAATTACATAACAATTTCAATACTGTAAATTACTAAAAAGGAT ATGTTTCCAAAATCAGTTGATGTAAATAATTAAATATGAATAACATCAAATAAATTGAAATTATGTTCTTTATACATATT TTATATTTGAGTCTAAAATGTCATTCATGTGGAAAACAATTTTGTGCACAATTCCATTGATAAAATATATCATGGAAACT GGACTTTCATGCGTTTTTTTTTTTTGAGGGAAGACTTTCATGCGTTTAAAAAAGAATGTAGGTAACACTCCTCTAAATTT AAAGCCTATTTTAACACTGCAGACCAAATAACACTTTTTTGTAGTAATAAGTTCAAGAAAGTCTTATTTAGTCCGTATAG AAACGGGATCATATTAGACTTTGGAAATAAATGAGGATTCAAGTTTGGTCCATTGATTTAAGGGAAGAGCAAACATGATA AAAAGATAACATGATCGGTTTGAAATTCTAAAATGTAAAATGGTGGGACTAGCCAAATACAAACTCATAGGCAATGCCTA GGCAATAAGTCCTAACCATGATAAGAGACCAAACTAAAATTACATCAACCATTACAAGTCCTAATTTCACATGTAGTCCT TGACAGCAAAGATAAGAGGCCCAACTAAAATTGCATTAGTGTAAGTCACACTAACTTTCACTCACGGTTCTTGGCAATAA GACACAGGTGATTTTTCTTGTGTCGAGCAAGTCCTTGTAGCCCTTTATCATCAATCTCTTCCCGCGTCATCTCAGGAGGC GTTTCCCAATCAAATGAGTTTAATAGGTTTGCAGTTATGAGCTCCAACGTGGCGATTCCTTGTGGCATGCCAGGGCAAAC TCTACGCCCGGCACCAAACGGAATGAGCTCAAAGTCTCGTCCCTTAAACTCTATGTTCTTGTTTAGGAATCTATCAGGAT TAAACTCGTGTGGGTCTTTCCAAGCCTCAGGATCCCTATGGATGGCCCAAACGTTTACATAAACAATTGTCTTGGCTGGT ATTTCATACCCATCTACGATAATATTTTTAATTGTTTCTCTTGGTATTAGTGGCGCCAGCGGATAAAATCTGAGTGTCTC TTTTATAACTGCCTTCAAGTATTCGAGTTTTTGAATATCCACTTCATCGATGAAGTCTTTGTTGCCACATAGATTTCTTA TTTCTTCTTGGACTTTCTTCATTGCTGTTGGGTTCTTCATTAATCCAGTCATGAGCCAAACTGATGCGGCTACACTCGTG TCAGTTGATCCTATAAGAAGGTCCTATGGTAAAGAAAAACGAGTATTAAGTAGGTGTGCTGGGAAAAATAAATGTAAGAG ATGAATTAATAATGAAAATTAAATTAAATGATACGTACCATCATGAAAGCTTTAATGTGTTCATCGGTGAGATCAATTGA GAGGGAACCCTGGTTTCTAAGCTGGAGTAGCGTATCAACTATATCATCCTCCTGGGTTTGATCTTTGATCCTATTAGGAT CGAGGTGCTCATCAAGGACTTGTTGGAAAAAGGCATCGAACGAGTTGATAGTTTTATCAAGACGAGCGAGTGAGCCTGTG AGTTTATCAATCCACCCCATGAAAGGAATGTAATCTGAAAAGAAGAAGGTTAGAAACATGGCTTGTCCCTGAACAAGAAG GCTATGGAAGATGCTGTTTTCAGCTCCATCCTCATCATAGATTCTCCCAAAAGCAATCCTGGAAATAGTACAGCTCGCGA CAGACATTATGATCTCACTCAAGTTTGTGACTTTGGAAGAAGAAATATGGCTAGATATCTTTTGAATCATTTGCTTGACC TCATATTTTCTTACATGGGAAAAGCTAGAGACCTTTTTCGCGCTGAAGAAATGGATGGCAGCAATTTTTCTGATTTCTCT CCAGTAATCATTGTATGGGGAAAAATTCATGTCCATGGCATTGTAAGAAATTCTTTTCTGGCTAAGTGTGGGAGCTCTGG TGCAAACAGCAAGATCATGGTCATTGAGGATCTTTTGGGCCATTTTAGGTGTGGAAATAATGATGGCTTTCTTGATGCCA AATCGAAGGGAAAAAATTGGACCATAGATCTTTGAGAGGTTCCAGAGTTGAAAATGGAAATTCAAACTGTCAAGTTGATG AAGGTTACCTATGATAGGAAGGCCTCTTGGACCTGGTGGAAGTGGAAGTTTCTTGTTGATGGATTTCTTCTTCAACAGGA TAATGAAGAGTACCAACAGAGGAGGAAGAGCTAGTACTAAGTACTGAACAGATGAGAAGGACAGTATCATTTTGCACTTT GCAGACACAAGATAGATCAATCTGGGAAGAAAAATCTTATCTGATTTTGATATTTCTTCTCTGTAAGAAACTAAGAAGGG ATCGAATGTGTGATGTTTTTGTACCTGCTCTCTAGTCCAATTTATATATATGCATACAAACCTCTACTTGGGATATCATA TAATATAATACAAAGTAGCCAGCTAGGAAATATATCACGTTTAGAATGCAAAGTCAAATTGGGGAAGACAGACACAAGTA AGAAAG
CDS sequence (LotjaGi6g1v0024400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTGGCACCTGTATCTTCAGACTCTATAAAGCCCAGAGATGTATGCATTGTTGGTGTTGCGCGCACACCGATTGG TGAGTTTCACGGTGCTCTGTCATCTATTCCGGCAACCAAGCTTGGCTCTATAGCTATTGAAGCTGCTCTTAAAATGGCGA AAGTTGATCCATCACTTGTACAAGAAGTGTACTTTGGGAATGTTTTCAGTGCTAATTTGGGGCAAGCTCCTGCGAGACAA GCTGCTCTTGGAGCAGGAATTCCCAACTCAGTTGTCTGCACTACTATTAACAAACTTTGTGCATCAGGATTGAAAGCTAC AATTCTTGCTGCACAGAGTATTCAATTAGGCATAAATGATGTGGTTGTGGGTGGTGGCACGGACAACATGTCTAATGTGC CTAAGTACTTGCCACATGCAAGGAAAGGATCCCGCCTTGGACATGAAACGGTTATTGATCCAATTTTGAAAGATGGTTTG ATGGATGTGTATAATCAAATTGACATGGTAGACTGTGCTGAACTGTGTGCAGAAAAATTTTCAATATCAAGAGAAGAACA GGATGCCACTGCAATTTTGAGCTATGAGCGTGGAATTGCTGCGCAGGAATGTGGTGCTTTTAAATGGGAAATTGTTCCAG TTGAAGTCTCTGGGGGAAAGGGAAAACCTTCAATTATTGTTGATAAAGATGAAAGTCTAGATAAGTTTGATGCTGCCAAG TTGCGTGAACTTCCACCAGCTTCCGAGAATGGAGGTTCTATTACTGCAGGCAATGCTTCTAGTATGGGTGATGGTGCTGC TGCACTAGTTTTGGTGAGTGGAGAGATAGCTCTGAAGCTTGGGCTTCAAGTTATTGCAAGAATCAGGGGATATGCTGATG CTGCTAAGGCACCAGAGGATTTTTCAACAGCTCCAAGTCTTGCCATTCCCAAAGCTCTTTCCCATGCTGGGTTGGATGCT TCAGAAATTGATTTCTTTGAAATTAATGAAGCATTTTCGGTTGTGACTCTTTGCAATCAGCAGCTTCTTGGAATTAATTC AGAAAAACTAAATTTGCATGGCGGAGCTGTATCCTTGGGGCATCCTCTTGGTTGCAGTGGGGCTCGTATCCTGGTGACAC TTTTAGGGGTCCTGAAGCGTAACAATGGGAAATATGGAGTTGGTGCTTCTTGCAATGGAGGTGGTGGAGCTTCTGCCCTT GTTTTGGAGCTTGTGTAA
Protein sequence (LotjaGi6g1v0024400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALAPVSSDSIKPRDVCIVGVARTPIGEFHGALSSIPATKLGSIAIEAALKMAKVDPSLVQEVYFGNVFSANLGQAPARQ AALGAGIPNSVVCTTINKLCASGLKATILAAQSIQLGINDVVVGGGTDNMSNVPKYLPHARKGSRLGHETVIDPILKDGL MDVYNQIDMVDCAELCAEKFSISREEQDATAILSYERGIAAQECGAFKWEIVPVEVSGGKGKPSIIVDKDESLDKFDAAK LRELPPASENGGSITAGNASSMGDGAAALVLVSGEIALKLGLQVIARIRGYADAAKAPEDFSTAPSLAIPKALSHAGLDA SEIDFFEINEAFSVVTLCNQQLLGINSEKLNLHGGAVSLGHPLGCSGARILVTLLGVLKRNNGKYGVGASCNGGGGASAL VLELV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 405 | 401 | 1.6E-219 | – | |
| PANTHER | 5 | 405 | 401 | 1.6E-219 | – | |
| PIRSF | 10 | 405 | 396 | 1.0E-113 | ||
| SUPERFAMILY | 15 | 282 | 268 | 7.87E-72 | ||
| Pfam | 16 | 273 | 258 | 7.4E-82 | ||
| TIGRFAM | 18 | 403 | 386 | 5.2E-120 | ||
| CDD | 18 | 403 | 386 | 1.46295E-176 | ||
| Gene3D | 18 | 288 | 271 | 2.7E-136 | ||
| Gene3D | 138 | 401 | 264 | 2.7E-136 | ||
| Pfam | 283 | 403 | 121 | 2.7E-44 | ||
| SUPERFAMILY | 284 | 404 | 121 | 1.97E-36 | ||
| ProSitePatterns | 351 | 367 | 17 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Transferase activity, transferring acyl groups other than amino-acyl groups | Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi6g1v0024400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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