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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0024700 |
Transcript ID | LotjaGi6g1v0024700.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | N utilization substance protein B homolog; TAIR: AT4G25330.1 SAWADEE protein; Swiss-Prot: sp|A1S6X3|FADR_SHEAM Fatty acid metabolism regulator protein; TrEMBL-Plants: tr|K7LYC7|K7LYC7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0024700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:4468254..4472664) extracted from Lotus japonicus Gifu genome v1.2.
AGGAAACTGAAACGCCATGAGATGAGAGAAACAAACACAAGGTGAGAAACGAGAAACGGAGACCATGGCTCTGATCACAG CTTCATCTGAAACCACCGAGTTCAAGAGCTTCAACGACGACGCTTGGTACACTGTCTGCGTAACAATGGACTCCGAACAA ACCCTCAAAGTCAGGTACCAAAACTTCCCTGAGGATCACGACAATCTCTTCGAACCCACATTCTTCGAATCGGAGGAACA GCTTCAAGATTTCCAAGAGAGATTCAGACCCCTCTCTAAACAGCTTCAAGATTCCGAGTGCCGCCAGCTCCGTCGCGGCG TTAAGGTCTGCGCTTGCCACCATTTCAGCTCCGACGACGTTCGCTTCTACGACGCCGTCGTCGACGCGGTTAGTCGCTCC TCCCTTTTATCACATTTTCGTTTTCGCTCAAAACGACATTGTGGTGAAAATAAATGTGGTGTGAAGTACCCAGTTTAATT AATTGTGAATAAATGCTACTAATTTAAGCTATTATATAGCAATATAAATGCTTATTAATTGTCTAATATGAGAAGCATGT TCTAATAAGCTCAAAATAGCTTATGTCAAGAGCTTATTTGAGTTTATCTTTTGGCATAAGCGCTTATTTATGTGTTTAGG AGAGCTTATGTAACTTATGAACTACTTTTTGAGCCTGTTTGGATGCAAACAAAAAAGCACTTATTGAAGCTCATGTGATG CTTTTTTTTAGTTGATAAGCTCCAATAAGCTCTAATAAGCTGGTATCCAAACGGAACCTTATATGCTCTTTTGGGCTTAT TTTCATAAGTTGCTTACAATAGCTTATGCTTATTCTGTTTTCAGCTTATTTCAATATGTTTCTTATATTGACTTATGCTT ATTAAGCTGCTCAGGTCATAGAATATTTTTATAAAGAGAAAGATTTTTTTTATGAACTTAACGAAATACGTGCTTAGATG TTTAGTTATAAAATAAGCTCAAATGTGCTTCTCAAAGCACACTCTTGGTATTCAATTCAACAGAATAGGAAGTTAGTGGT TTTTATTTTATTTACTGTTGGGAAAAGTAAACATGATTTTATATTCTTCATTAATTTGGTTCCTCTGTGTTTGTATGTGC TTCTGAAATTTTGTGTGTCTGTTTTCATAAGGTGATAAAAGGCGATCATTCTTTTGAAAAAGCAGAGGAAGTGTGCCACT GCAAATTTGTGCTCTTCTGGTTACATGGGCCTAATGCTGAAAATTTGACCACTAGCACTGTGGAGAATATTTGCATAGTT CAGCCTGTGAAGCCAGATCCGGCAGTGGATTCATTTCTGAAGATGACAAGAGAGAGATTAGGAGTTATCTCTTCTCCATC TATTTTAACACCGAAGGGAGTTTGTGGATTGGAAATGGTGGCATATCGCGATGAAGGCTCAAACACTGTCCCTATGCTGG CATATGGCAATGATGGCTCAAAGACTGCCCCTAGAATTGGTTATTTTGAACGAGTGCGAAAGGCAAGTAGTATGTGCATC TCTCTATTACAGATCCAGAAGTAGTTTTTATTATCTTGCATGCTAACAACATATTTGGATCAACTTATTTTTTTCAAAGA ATCAATTTGGTCCTCAGAAGCTATTCACGAAAGCTTCTTCCAAGAATTGATTTTGGTTTTAAAATTTATTGTTGAAGGAT TTCCAAATATGCTATAGAAAAATTATAGTAATAGCATGGGTTCAAGTTCTTAGATGTGCTTTCTGTGTCTGACATCATAT ATATTCCTCTCTGTAGGAAACACGACGTGCCAGGAAATCTTCCTCCAAACTTTGTTTACCTGCAGGTTTGTTTCTATGTA ATATAGACGACGTCTTCAAAAATATTTCTGATATTTTAATGCTTCTCTTCATATGATTGTCCTTTTATAATTTGACATTG ACATTGTATACTTGTAGTTTTTTGTTTATAGGCAAATGTTAGTTGTTCGTAAATCAGTGTAAATTATCCCTCCTCAAGGT TCGAACCCTGACCCTTCACCTACAATTACCCTTAGCTCAACCATGTGGGCTACCCATCCCCCCGACATGGTATACTTGCT GGAACTACATTACAACTCACAACGTGACTGACCCACTGGTCTAGACCAGATGTGTTCAGGCTTCAAATGAAACATGTAGT GTTCTTTTGTGTGTAAATGGACTGATGATGATTGGGTTTGAAATGAACCATGTAGTGTTTTATGTGTTTTGGCTGTTTTA TGTGTATCTAAGCTTCTTTCCTAATCCACTGATTGGATTTGTTTACAAAGATTTGTTTCACTCTTTAGTTTTGTTTAGTG TTTGGTATCTCCCAAAGTCCTTGTCTAATTCTCAAACTGATGAATATCTTTATCAGTAGTATAATTTGATACATTGTGTC TCTGTTTTTCGTTTGGGTAGTTTTTACATTTTCAGTATCTATTTTTAATAGCCTTATCATTATTTGATCTCTTCCTATTT TGAGGGGGTGTGTTGAGAAGTTTCACATGAACTAGAGATATGACCAAGATAGCCCTTATATATATGAAAACAATCCTCAC CTCCAAGCTTGCTTTTGGGGTAGAGATATGCCTCCCATATTCTAATATATGGTTAGGAATTGGAGATATTAATTGTAGAT ATTAACTTTGTTAGGAGTCCTTATTCTCATAATGCGTAGTAGGACGTTGTCAATATTGACCCAAATTACTGGCCTAATAT TTTGCAACTGTTATTTCTATGTATGATATTGTTCTATAAAATAAATCTTTTAACCTTTGTCTTCTGTTTTTCATCTGATT TTGTTTGTTTCATTCTGGTTTATAGTCAGCTGTGATGCCAAAAGAACGGAAGATAGTGATCTTGGAGGTAAAAGGAATGT GTGTATGATTTTGATTGGAAATCTTGATAGAGAACTATGCCCATTAACAGTTGAACAATTCCTACAAAGACATGCTTCAG TATCATCTAGAGTCTTCATTTTTCCAAGTTTGTCATGGGAGATGTATACAAGGGGGGCCATTCTGTTGAATTCTGAAACA GTGTTCCAAAAGCTTTGTGAGTTTTTGACAGATCCCCACCACATCATAACATCTTCAACTGGCAGGTATATGTATGTATA GTTCTATGCATTGATATCTGTCCTATATATTTTAAGAAGGGTTCAATGTGGTTATCTGCTGTTGGTTCGACCGTGAAAAG TAAATGCCCATGCTCACCAATTAAAGTAAAAAAGGCTTGTCAAATCTTTTGACAGCAATTATTGAAATAACTTTACCAGC AATGCTTGGAAAAGGTTATGGATTACAAGCCTAGGCTAGTGAATTCTGTATATGTTAATGATGTATGGTTATTTTCATTT GCTATTTAAACCTCTTCACTGTCTTTTTCCAGACCATGGGTGATAATTGATATGGTAGCGGGTCTCAAAAATGTCAAAGC ATCCATAGGAACATTGATTCCTATATCTCAGGTAGCTTATACACAAATTTATTTTATCCTTTTTTCCAATAAAGAATAAT TTAAGGCTTGGTAGTGGAGACCGGAGCATGGTCATTAGGATTGCCAGATGGCTAAATTGAGGAACCATCAGTAATCAATT TTCGTTTTAGTAGGACCCTGTCCACTAGGGAAACTTTGCATGAGAGAATACATGCTGTTTTTGAAGGATTTGAAGAGTTA CTATAGAGGGTAAAGTAATCATCACTGCTATTGATTGCGAAATCTATAGTTATGATTGTGCTCATATACTTACAGACATA TCAATTCTTGATTTCTTAATGAACAATTGTAATTGCTCACTTTATCGGCAGCAAAAGGACTAAAGAATTTGATTAGATGT AATAATTGCCAAAGGTAGTTTCTCTATATATTTCCTCCCTCCCTTACTGATAAAGATTTTATTGTTGCAGAGTGCATTAC AGAATGGAAAGAAAGGAACCAGGCAAAGTTTGAAGATTGTATCTTCAGAAAGTCCTGAATTCAAGATAGCTAGTGATCTG AGGGATATGTTTGTGGAATTTTCTGATCACCAAGAGCGGCTACACAAGAAGCTTGCACTTGAGGAGAGAAGGGTAATTGC AGCTTAGGTCCTTTGATGAACTTGCTTAAACCGTATAAATCCCTTAGTTTTTACTGGATTTGTAAGTAAATGTTGCACAG GTATTGGAGAATCTGGGTATAAATAGGAGGTTGTGAATACAACTAGGACTATGACCAACCATGCTAGTTTGGATTTCTAG TTATAGTGGGGCTGATTGCTAACTATAAGCTGTTTAGGATAGAATTCCTTCTTAAAAAGATGAACTCAGAACTCAGAATT GATTATCTTTTTTAACTCTTATACAATTGAATATTGTATAGGAATTCAATGAAAAACTATTATCTTACCCTAACGAAAAT TTTAATTTATT
CDS sequence (LotjaGi6g1v0024700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTGATCACAGCTTCATCTGAAACCACCGAGTTCAAGAGCTTCAACGACGACGCTTGGTACACTGTCTGCGTAAC AATGGACTCCGAACAAACCCTCAAAGTCAGGTACCAAAACTTCCCTGAGGATCACGACAATCTCTTCGAACCCACATTCT TCGAATCGGAGGAACAGCTTCAAGATTTCCAAGAGAGATTCAGACCCCTCTCTAAACAGCTTCAAGATTCCGAGTGCCGC CAGCTCCGTCGCGGCGTTAAGGTCTGCGCTTGCCACCATTTCAGCTCCGACGACGTTCGCTTCTACGACGCCGTCGTCGA CGCGGTGATAAAAGGCGATCATTCTTTTGAAAAAGCAGAGGAAGTGTGCCACTGCAAATTTGTGCTCTTCTGGTTACATG GGCCTAATGCTGAAAATTTGACCACTAGCACTGTGGAGAATATTTGCATAGTTCAGCCTGTGAAGCCAGATCCGGCAGTG GATTCATTTCTGAAGATGACAAGAGAGAGATTAGGAGTTATCTCTTCTCCATCTATTTTAACACCGAAGGGAGTTTGTGG ATTGGAAATGGTGGCATATCGCGATGAAGGCTCAAACACTGTCCCTATGCTGGCATATGGCAATGATGGCTCAAAGACTG CCCCTAGAATTGGTTATTTTGAACGAGTGCGAAAGGAAACACGACGTGCCAGGAAATCTTCCTCCAAACTTTGTTTACCT GCAGTCAGCTGTGATGCCAAAAGAACGGAAGATAGTGATCTTGGAGGTAAAAGGAATGTGTGTATGATTTTGATTGGAAA TCTTGATAGAGAACTATGCCCATTAACAGTTGAACAATTCCTACAAAGACATGCTTCAGTATCATCTAGAGTCTTCATTT TTCCAAGTTTGTCATGGGAGATGTATACAAGGGGGGCCATTCTGTTGAATTCTGAAACAGTGTTCCAAAAGCTTTGTGAG TTTTTGACAGATCCCCACCACATCATAACATCTTCAACTGGCAGACCATGGGTGATAATTGATATGGTAGCGGGTCTCAA AAATGTCAAAGCATCCATAGGAACATTGATTCCTATATCTCAGAGTGCATTACAGAATGGAAAGAAAGGAACCAGGCAAA GTTTGAAGATTGTATCTTCAGAAAGTCCTGAATTCAAGATAGCTAGTGATCTGAGGGATATGTTTGTGGAATTTTCTGAT CACCAAGAGCGGCTACACAAGAAGCTTGCACTTGAGGAGAGAAGGGTAATTGCAGCTTAG
Protein sequence (LotjaGi6g1v0024700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALITASSETTEFKSFNDDAWYTVCVTMDSEQTLKVRYQNFPEDHDNLFEPTFFESEEQLQDFQERFRPLSKQLQDSECR QLRRGVKVCACHHFSSDDVRFYDAVVDAVIKGDHSFEKAEEVCHCKFVLFWLHGPNAENLTTSTVENICIVQPVKPDPAV DSFLKMTRERLGVISSPSILTPKGVCGLEMVAYRDEGSNTVPMLAYGNDGSKTAPRIGYFERVRKETRRARKSSSKLCLP AVSCDAKRTEDSDLGGKRNVCMILIGNLDRELCPLTVEQFLQRHASVSSRVFIFPSLSWEMYTRGAILLNSETVFQKLCE FLTDPHHIITSSTGRPWVIIDMVAGLKNVKASIGTLIPISQSALQNGKKGTRQSLKIVSSESPEFKIASDLRDMFVEFSD HQERLHKKLALEERRVIAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 7 | 415 | 409 | 8.5E-126 | – | |
Pfam | 11 | 149 | 139 | 7.5E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Chromatin binding | Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. |
Expression pattern of LotjaGi6g1v0024700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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