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IPR032001

Source: InterPro

Description

IPR032001 is a SAWADEE domain.

<p>The SAWADEE domain, found in plant homeobox proteins SHH1 and SHH2, has a tudor-like fold and binds chromatin [[cite:PUB00067066]]. SHH1 protein is involved in RNA-directed DNA methylation (RdDM) [[cite:PUB00076160]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003682
Molecular function Chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
Subterm of

Associated Lotus transcripts 24

Transcript Name Description Predicted domains Domain count
Lj0g3v0251499.1
– Os09g0346900 [Oryza sativa Japonica Group] gi|115478697|ref|NP_001062942.1|
Domains
7
Lj0g3v0332199.1
– Chain B, Crystal Structure Of Shh1 Sawadee Domaingi|485601914|pdb|4IUQ|A Chain A, Crystal Structure Of Shh1 Sawadee Domaingi|485601915|pdb|4IUR|B Chain B, Crystal Structure Of Shh1 Sawadee Domain In Complex With H3k9me3 Peptidegi|485601917|pdb|4IUR|A Chain A, Crystal Structure Of Shh1 Sawadee Domain In Complex With H3k9me3 Peptidegi|485601918|pdb|4IUT|A Chain A, Crystal Structure Of Shh1 Sawadee Domain In Complex With H3k9me2 Peptidegi|485601919|pdb|4IUT|B Chain B, Crystal Structure Of Shh1
Domains
9
Lj3g3v0428880.1
– Sequence-specific DNA binding protein [Arabidopsis lyrata subsp]. lyrata] gi|297834744|ref|XP_002885254.1|
Domains
15
Lj3g3v0428920.1
– Sequence-specific DNA binding protein [Arabidopsis lyrata subsp]. lyrata] gi|297834744|ref|XP_002885254.1|
Domains
5
Lj5g3v0866940.1
– Sequence-specific DNA binding transcription factor [Arabidopsis thaliana] gi|22331151|ref|NP_188467.2|
Domains
6
Lj5g3v0867080.1
– Sequence-specific DNA binding protein [Arabidopsis lyrata subsp]. lyrata] gi|297834744|ref|XP_002885254.1|
Domains
5
Lj6g3v0215820.1
– Rubisco methyltransferase family protein [Theobroma cacao] gi|508701647|gb|EOX93543.1|
Domains
3
Lj6g3v0215820.2
– Rubisco methyltransferase family protein [Theobroma cacao] gi|508701647|gb|EOX93543.1|
Domains
3
LotjaGi1g1v0126100_LC.1
– Protein sawadee homeodomain-like 2; TAIR: AT1G15215.2 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I3SAF7|I3SAF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0126100_LC
Domains
10
LotjaGi1g1v0126200_LC.1
– Protein sawadee homeodomain-like 2; TAIR: AT1G15215.2 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I3SAF7|I3SAF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0126200_LC
Domains
7
LotjaGi1g1v0126400_LC.1
– Protein SAWADEE HOMEODOMAIN-like protein 1; TAIR: AT3G18380.1 DNA-BINDING TRANSCRIPTION FACTOR 2; Swiss-Prot: sp|Q8RWJ7|SHH2_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 2; TrEMBL-Plants: tr|I3SAF7|I3SAF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0126400_LC
Domains
7
LotjaGi1g1v0126600_LC.1
– Protein sawadee homeodomain-like 2; TAIR: AT1G15215.2 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I3SAF7|I3SAF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0126600_LC
Domains
10
LotjaGi1g1v0126600_LC.2
– Protein sawadee homeodomain-like 1; TAIR: AT1G15215.2 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I3SAF7|I3SAF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0126600_LC
Domains
10
LotjaGi1g1v0126600_LC.3
– Protein sawadee homeodomain-like 1; TAIR: AT1G15215.3 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I1KGJ4|I1KGJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0126600_LC
Domains
8
LotjaGi1g1v0408600.1
– Protein sawadee homeodomain-like 1; TAIR: AT1G15215.2 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I3T1R4|I3T1R4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0408600
Domains
10
LotjaGi3g1v0044200.1
– DNA-BINDING TRANSCRIPTION FACTOR 2; TAIR: AT3G18380.1 DNA-BINDING TRANSCRIPTION FACTOR 2; Swiss-Prot: sp|Q8RWJ7|SHH2_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 2; TrEMBL-Plants: tr|G7LDQ2|G7LDQ2_MEDTR Sequence-specific DNA-binding transcription factor; Found in the gene: LotjaGi3g1v0044200
Domains
17
LotjaGi3g1v0044300.1
– Protein sawadee homeodomain-like 2; TAIR: AT3G18380.1 DNA-BINDING TRANSCRIPTION FACTOR 2; Swiss-Prot: sp|Q8RWJ7|SHH2_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 2; TrEMBL-Plants: tr|A0A0B2PMB5|A0A0B2PMB5_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0044300
Domains
12
LotjaGi3g1v0183600_LC.1
– Protein sawadee homeodomain-like 2; TAIR: AT1G15215.3 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I3SAF7|I3SAF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0183600_LC
Domains
7
LotjaGi3g1v0183600_LC.2
– Protein sawadee homeodomain-like 1; TAIR: AT1G15215.2 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I3SAF7|I3SAF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0183600_LC
Domains
8
LotjaGi3g1v0370500_LC.1
– Protein sawadee homeodomain-like 1; TAIR: AT1G15215.2 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I3SAF7|I3SAF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0370500_LC
Domains
8
LotjaGi3g1v0370500_LC.2
– Protein sawadee homeodomain-like 1; TAIR: AT1G15215.3 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I3SAF7|I3SAF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0370500_LC
Domains
11
LotjaGi3g1v0370700_LC.1
– Protein sawadee homeodomain-like 2; TAIR: AT1G15215.2 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I3SAF7|I3SAF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0370700_LC
Domains
8
LotjaGi6g1v0024700.1
– N utilization substance protein B homolog; TAIR: AT4G25330.1 SAWADEE protein; Swiss-Prot: sp|A1S6X3|FADR_SHEAM Fatty acid metabolism regulator protein; TrEMBL-Plants: tr|K7LYC7|K7LYC7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0024700
Domains
3
LotjaGi6g1v0038600.1
– Protein SAWADEE HOMEODOMAIN-like protein 1; TAIR: AT1G15215.2 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|A0A151SH36|A0A151SH36_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0038600
Domains
10

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd00086 CDD 1 4.17