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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0027000 |
| Transcript ID | LotjaGi6g1v0027000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane 9 superfamily member; TAIR: AT4G12650.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|F4JRE0|TMN12_ARATH Transmembrane 9 superfamily member 12; TrEMBL-Plants: tr|G7J833|G7J833_MEDTR Transmembrane 9 superfamily member; Found in the gene: LotjaGi6g1v0027000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:4764513..4768685) extracted from Lotus japonicus Gifu genome v1.2.
TTCCCATCATGTCCTCTATTATATATTTCACTTTTTTCGACTTGATTCAACCACAATTGCACCTTTGAACCTTAAATCAG TTTTTTGAAAGTATCCATGTGTTGTTACTATAATAAAATTGTTGAAATAATCGAGTCCTTTCCATTTTGTTTGATTTGGT TTGAGTCTTATAATCTCCAAGAATCAAAGATGGAGAAAGGCATAGGTGGGCTGGTCCACACCACAACCTGACCCAACCCA AAAAACGCATGTGAGATTCCCCTCGAACTATAGATCTAAATCTGCGTTTGGTTGCGTTGTGTTGAAAAATTGAGATCGAT CTCTCTCGACATAACGCCAAAAATCCAAGGTGGGTTTCTCCTTCACTTGTTTCTCACTCTAACCCTCTCTCTCTCTCTCT CTCTTTCTCACACACATCACTTCCTTGCCCAGATCTCATGGTTTGCGTTTCTCTCCTTCTTCTACTATTCCCTGTTTCTT TCGTTTTCTTTTTCTTATCTCAACTGCATATCAATTTCGATGTTACTTTATTCTTCATGCTTTCTTTTCATTCAATTGTT TCGTTTCATTCTTAATGTGATTGCTATCTTTGCTAGTTCTTTTCATTTCATGTTACAACTGATCTGTGTTGCTCTTTCTT CACTTTGCTTCATGACTAGTGGATCTGATTTGAATCCTTTCATGTTATATATCAATGCTTGAGGGTTTTATTTTTGTTTA GTTAAATTAGTAATTATAAGAGATCATTGATATTAGTTCTTGAATAATGTAATCTATATTTCAAATTAGTTCCTGAATTT GAATTTCGTCAATTTTGCAGTCAAATCACTCCTCATGCACTTGGGGACCAACATTAGTTCAGGAGATTTAGGCTTAATTT TAGTTGTTCAGGAGATAATACTACTGATGCCGTAGTTTTTATGAAATTGATTTGATTAATAACTCTTTGTAACCTAATTT TAATGGCTTTGGCGTCTAATGTTGTAGTTTTCACTCTTATGTAGATTTGAATGCGTTCACGGTTGGAGTTAGCTTGGATT TGCTGAAAGCTTTCAGCGTCTGCTGTTTGTTGTTTCTTGCGTTTGAGGAAATAAATGGAGTTTCCAACTCCGAGGAAATC CTTGATCTACTGGGCTTTTGTTTCTCTCGTTGTCTTTGCCAATGTTAGCGATGGATTTTATCTTCCAGGGACCTACATGC ACACTTACTCCAATAAAGAACCTATATTTGCCAAAGTCAATTCGTTAACTTCTATTGAAACTGAGCTTCCGTTTAGCTAC TACAGCCTCCCTTACTGCAAGCCCCCTGGTGGCGTAAAGAAAAGTGCTGAGAATCTTGGGGAACTTCTTATGGGAGATCA GATTGATAACTCACCCTACCGTTTCCAGATGAATGTCAATGAGACAGTCTACCTCTGTACCACATCGCCATTAAATGAGC ACGAGGTGAAGCTACTCAAACAAAGAACGCGTGATCTGTATCAAGTGAATATGATCCTTGACAACTTACCTGTTATGAGG TTTACTACCCAAAATGGGATTAAAATCCAGTGGACAGGGTTCCCTGTTGGGTACACTCCATCTGAGAGTGGTCCAGATTA CATCATTAACCACCTTAAATTCACGGTCATGGTTCATGAGTATGAAGGAAGAGGGGTTGAAATTATTGGGACTGGGGAGG AAGGTTTGGGTATTATTTCTGAAGCTGACAAGAAGAAGGCATCTGGGTATGAAATAGTTGGTTTTCAGGTTGTCCCTTGT AGTATTAAATATGATCCTGAAGTCATGTTAAAGCACAAAACATATGATAATATCTCTTCTGTAAGCTGCCCTGGTGAGCT TGACAAGTATCAAGTAATTAGAGAGCAAGAAAGGATATCATTTACTTACGAGGTTGAATTTGTGAAAAGTGATATAAAAT GGCCATCACGTTGGGATGCATATTTGAAGATGGAGGGTTCTCGTGTCCATTGGTTCTCAATCCTAAATTCACTTATGGTT ATCTTATTCCTAGCTGGTATTGTTTTTGTCATTTTCTTAAGAACTGTAAGAAGGGACTTGACAAGGTATGAGGAATTGGA CAAAGAGGCACAAGCTCAGATGAATGAGGAGCTCTCTGGATGGAAACTAGTTGTGGGTGATGTGTTTAGGGAGCCTGATT GCTCAAAGCTTCTCTGTGTGATGGTTGGAGATGGGGTTCAGATTCTTGGAATGGCTGGTGTTACTATTGTTTTCTCAGCA CTTGGTTTCATGTCGCCAGCATCCCGAGGTATGCTACTAACAGGGATGATCATTTTATATCTTATCCTGGGAATTTCGGC TGGCTATGTCAGTGTACGTCTCTGGAGGACCATTAAGGGAACATCAGAAGGGTGGAGATCGATTTCCTGGTCTGCTGCAT GTTTTTTCCCTGGAATTGCTTTCATTATCCTCACAATACTGAATTTTATTCTATGGAGCAGCAACAGTACTGGTGCTATA CCCATTTCGTTGTATTTCGAACTGTTCTTCCTCTGGTTTTGCATCTCAGTACCTCTTACCCTCATTGGAGGATTTATGGG GACAAAAGCTGAGCCCATTGAATTTCCTGTGCGGACTAATCAGATTCCAAGGGAAATTCCTGCACGGAAATATCCATCAT GGCTTCTTGTTCTTGGTGCTGGAACTCTTCCATTTGGAACCCTCTTCATTGAACTTTTCTTTATCCTTTCCAGTATCTGG CTTGGGAGGTTCTATTATGTGTTTGGTTTCCTGTTGGTGGTTCTTCTATTGCTGGTTATCGTCTGTGCTGAAGTTTCAGT GGTTCTCACATATATGCATCTCTGTGTGGAAGATTGGCGGTGGTGGTGGAAGGCGTTCTTTGCTTCAGGTTCTGTTGCAC TATATGTTTTCTTGTACTCCGTCAACTACTTGGTTTTTGACCTGCAGAGTTTGAGTGGACCTGTCTCCGCTGTCCTTTAC CTTGGCTATTCACTGCTAATGGCAGTTGCTATCATGTTGTCGACCGGGACCATTGGCTTCCTCATGTCATTCTACTTTGT GCACTACTTGTTCTCTTCTGTGAAGATAGATTGAGGTTCTCCCTGTTATCTCTCATAAACTAAGCAAAAAGTTCAGTTGA TGTAACTTCTGCTGAGTTCTTTTTGTAGCTTGTTCGCTTCGCAGAATGTTGAGTGGGGTAGACAGATACTTCATTGATTT CCTTGAATAGTTGTCAATCCCTTTTATATTTCAATGTGATCTGCATCTTGTTCCCCTTCTACTTGTTTTTAAGTATTCAA CTAGATTTTGAGGGCATTATGTTTCAACTACACTAGGATAGTTAAGTTGCTTCAGGAAGATATAATTGCTTAGATTGTCT CATCTCATTATTATAGAAAAATGTTTGATGTATACTTTCAGATTTCGTTGTGATGTTCACTATGCTTCTGGGTGTTAATT TTTATATTTTCTTTGCATTCAAGGATAGGGAAGGCGACCGAGTATTGTACACTATTTGAATGGTTTTATTTGAACTTAAT TGTCCACAATTTTGGCTTTGTATTATACTATTGTTTCATTTATTTCTATTTCTATTTTATTTTGTAGCTGGATGCTTGTA ATTTTGATTAACTATGCTTCTGGATATGTAAATATTGATTACATGTAGTATTTCTACAGCAATCAGCTTTACATCATTAC AACTGAGTTCAACTTTTTGGTATAATAGCCTGAGCCATGGTCTCTGACGAAGTTTAGTAATTGCAAAGTCAAAATGCAAG TAGCACCAAAGTTTTTGAGCATGATTGGAAATGTTCTGTTAAATTCTTAAACAGAAACAGTTTTTCTTTATGGCTGTAGT TCAGTTTTCATTGAGTCATGTATTTCTCACGTTCCTTTTTTCAATAAATTTATTGAAAATACAGTTATATCATGACAATG TTCTATGGAAAGGAAAGGGGGAAAATTAATTGTTTGGCAGCATCCCTCTCAAATAGTGGTAGCTTTTTCTTCTCTTCTCG AAAGGTTACACACTTTTATAAATGTGTTTGGATGCACTTCAAACCTTCCTGGAATCACTTAAATTTAAATTTGAAGCTAG TTTTGCACCTAACATTGTGTGCACCAAGTGTCCAAGTCAATTCAAAAACAGTAGTAGTGCAATTTTGCAGTTTGCTATCT GATGTTATGATTT
CDS sequence (LotjaGi6g1v0027000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTTCCAACTCCGAGGAAATCCTTGATCTACTGGGCTTTTGTTTCTCTCGTTGTCTTTGCCAATGTTAGCGATGG ATTTTATCTTCCAGGGACCTACATGCACACTTACTCCAATAAAGAACCTATATTTGCCAAAGTCAATTCGTTAACTTCTA TTGAAACTGAGCTTCCGTTTAGCTACTACAGCCTCCCTTACTGCAAGCCCCCTGGTGGCGTAAAGAAAAGTGCTGAGAAT CTTGGGGAACTTCTTATGGGAGATCAGATTGATAACTCACCCTACCGTTTCCAGATGAATGTCAATGAGACAGTCTACCT CTGTACCACATCGCCATTAAATGAGCACGAGGTGAAGCTACTCAAACAAAGAACGCGTGATCTGTATCAAGTGAATATGA TCCTTGACAACTTACCTGTTATGAGGTTTACTACCCAAAATGGGATTAAAATCCAGTGGACAGGGTTCCCTGTTGGGTAC ACTCCATCTGAGAGTGGTCCAGATTACATCATTAACCACCTTAAATTCACGGTCATGGTTCATGAGTATGAAGGAAGAGG GGTTGAAATTATTGGGACTGGGGAGGAAGGTTTGGGTATTATTTCTGAAGCTGACAAGAAGAAGGCATCTGGGTATGAAA TAGTTGGTTTTCAGGTTGTCCCTTGTAGTATTAAATATGATCCTGAAGTCATGTTAAAGCACAAAACATATGATAATATC TCTTCTGTAAGCTGCCCTGGTGAGCTTGACAAGTATCAAGTAATTAGAGAGCAAGAAAGGATATCATTTACTTACGAGGT TGAATTTGTGAAAAGTGATATAAAATGGCCATCACGTTGGGATGCATATTTGAAGATGGAGGGTTCTCGTGTCCATTGGT TCTCAATCCTAAATTCACTTATGGTTATCTTATTCCTAGCTGGTATTGTTTTTGTCATTTTCTTAAGAACTGTAAGAAGG GACTTGACAAGGTATGAGGAATTGGACAAAGAGGCACAAGCTCAGATGAATGAGGAGCTCTCTGGATGGAAACTAGTTGT GGGTGATGTGTTTAGGGAGCCTGATTGCTCAAAGCTTCTCTGTGTGATGGTTGGAGATGGGGTTCAGATTCTTGGAATGG CTGGTGTTACTATTGTTTTCTCAGCACTTGGTTTCATGTCGCCAGCATCCCGAGGTATGCTACTAACAGGGATGATCATT TTATATCTTATCCTGGGAATTTCGGCTGGCTATGTCAGTGTACGTCTCTGGAGGACCATTAAGGGAACATCAGAAGGGTG GAGATCGATTTCCTGGTCTGCTGCATGTTTTTTCCCTGGAATTGCTTTCATTATCCTCACAATACTGAATTTTATTCTAT GGAGCAGCAACAGTACTGGTGCTATACCCATTTCGTTGTATTTCGAACTGTTCTTCCTCTGGTTTTGCATCTCAGTACCT CTTACCCTCATTGGAGGATTTATGGGGACAAAAGCTGAGCCCATTGAATTTCCTGTGCGGACTAATCAGATTCCAAGGGA AATTCCTGCACGGAAATATCCATCATGGCTTCTTGTTCTTGGTGCTGGAACTCTTCCATTTGGAACCCTCTTCATTGAAC TTTTCTTTATCCTTTCCAGTATCTGGCTTGGGAGGTTCTATTATGTGTTTGGTTTCCTGTTGGTGGTTCTTCTATTGCTG GTTATCGTCTGTGCTGAAGTTTCAGTGGTTCTCACATATATGCATCTCTGTGTGGAAGATTGGCGGTGGTGGTGGAAGGC GTTCTTTGCTTCAGGTTCTGTTGCACTATATGTTTTCTTGTACTCCGTCAACTACTTGGTTTTTGACCTGCAGAGTTTGA GTGGACCTGTCTCCGCTGTCCTTTACCTTGGCTATTCACTGCTAATGGCAGTTGCTATCATGTTGTCGACCGGGACCATT GGCTTCCTCATGTCATTCTACTTTGTGCACTACTTGTTCTCTTCTGTGAAGATAGATTGA
Protein sequence (LotjaGi6g1v0027000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFPTPRKSLIYWAFVSLVVFANVSDGFYLPGTYMHTYSNKEPIFAKVNSLTSIETELPFSYYSLPYCKPPGGVKKSAEN LGELLMGDQIDNSPYRFQMNVNETVYLCTTSPLNEHEVKLLKQRTRDLYQVNMILDNLPVMRFTTQNGIKIQWTGFPVGY TPSESGPDYIINHLKFTVMVHEYEGRGVEIIGTGEEGLGIISEADKKKASGYEIVGFQVVPCSIKYDPEVMLKHKTYDNI SSVSCPGELDKYQVIREQERISFTYEVEFVKSDIKWPSRWDAYLKMEGSRVHWFSILNSLMVILFLAGIVFVIFLRTVRR DLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDCSKLLCVMVGDGVQILGMAGVTIVFSALGFMSPASRGMLLTGMII LYLILGISAGYVSVRLWRTIKGTSEGWRSISWSAACFFPGIAFIILTILNFILWSSNSTGAIPISLYFELFFLWFCISVP LTLIGGFMGTKAEPIEFPVRTNQIPREIPARKYPSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFLLVVLLLL VIVCAEVSVVLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSVNYLVFDLQSLSGPVSAVLYLGYSLLMAVAIMLSTGTI GFLMSFYFVHYLFSSVKID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| PANTHER | 9 | 659 | 651 | 0.0 | ||
| TMHMM | 9 | 31 | 23 | - | – | |
| PANTHER | 9 | 659 | 651 | 0.0 | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| Phobius | 22 | 27 | 6 | - | – | |
| Phobius | 28 | 292 | 265 | - | – | |
| Pfam | 59 | 611 | 553 | 2.6E-182 | ||
| TMHMM | 293 | 315 | 23 | - | – | |
| Phobius | 293 | 315 | 23 | - | – | |
| Coils | 315 | 335 | 21 | - | – | |
| Phobius | 316 | 367 | 52 | - | – | |
| TMHMM | 368 | 390 | 23 | - | – | |
| Phobius | 368 | 387 | 20 | - | – | |
| Phobius | 388 | 392 | 5 | - | – | |
| Phobius | 393 | 417 | 25 | - | – | |
| TMHMM | 395 | 417 | 23 | - | – | |
| Phobius | 418 | 428 | 11 | - | – | |
| Phobius | 429 | 454 | 26 | - | – | |
| TMHMM | 430 | 452 | 23 | - | – | |
| Phobius | 455 | 465 | 11 | - | – | |
| Phobius | 466 | 488 | 23 | - | – | |
| TMHMM | 467 | 489 | 23 | - | – | |
| Phobius | 489 | 515 | 27 | - | – | |
| TMHMM | 516 | 538 | 23 | - | – | |
| Phobius | 516 | 542 | 27 | - | – | |
| Phobius | 543 | 547 | 5 | - | – | |
| TMHMM | 548 | 570 | 23 | - | – | |
| Phobius | 548 | 571 | 24 | - | – | |
| Phobius | 572 | 582 | 11 | - | – | |
| Phobius | 583 | 603 | 21 | - | – | |
| TMHMM | 583 | 605 | 23 | - | – | |
| Phobius | 604 | 622 | 19 | - | – | |
| Phobius | 623 | 649 | 27 | - | – | |
| TMHMM | 627 | 649 | 23 | - | – | |
| Phobius | 650 | 659 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi6g1v0027000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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