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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0029700 |
| Transcript ID | LotjaGi6g1v0029700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Membrane steroid-binding protein; TAIR: AT4G14965.1 membrane-associated progesterone binding protein 4; Swiss-Prot: sp|Q2HIW2|MAPR4_ARATH Membrane-associated progesterone-binding protein 4; TrEMBL-Plants: tr|I3S423|I3S423_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0029700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:5216047..5223210) extracted from Lotus japonicus Gifu genome v1.2.
GTTCGAGAGTGTGATTGTTAATGTTATGTTGTATGTGAAGTGAGAAACAAACCAAATCGATGAGTTTGAAAACACTAGCA ACCTCTCCTCTTTCAGTGATCACATTTGTGGTCCTTCTTCTCGCTCTCTATCTCAGATTTTCCATCAAATTCGACTCCGC ACAACCGGCACAGGTCACTGCTTCTAACCCATAAAATTTCTTTCTGTTTTTTTCAAAGAAAAGTGAAATTCTTTTCTGGG TTTTGAATTTCATACCAGTTGTGCTATTGGGTGATAAAAAATCCAATCTTTTTTCCTTTTTACTACTACCCTATTGGACT AAGTCAATGACTTTGACTCCTGATTTTGTTTACAGAGGTTGTTCAATGCTGAAGAGCTTGCATTGTTCAATGGAACTGAT GAAGGGTTGCCAATTCTTCTAGGAATTCTTGGGTATTCCTCTCTTATTCTCCCACATTCTATGTTGTCTCTGTCTCAGTT TTGGACACTGATGCTCTTCAATAGTATAGTTGCACTTGAATATTTATGTTGTTAACTCTAATGTGATATATCTTTTTTAT TGTTTTTGATAGATCTGTGTATGATGTAACAAAGGGAAAATCTCATTATGGTTCAGGAGGGGGCTACAATCATTTTGCTG GAAGGCATGATCTTGAACCCTTTCCTCAGCCAAACAATTTTTATTTTCTGATTTGAGAATCATATGAAATATTTCCATTT CAGCTCATTGACTATTTTTCTGTTAATTAAAATTCAGGGATGCTTCTCGCGCGTTTGTGTCAGGAAATTTCACAGGTAAT TGAGTTATTTGGTTTGTTAGATTGGTGTTTCTTAATGATTGAATAATCCATTGTCAAGGCTGAGAGAAACTTGATCATGG TCTTTCTTGAATTCTAATCAGATTTATCAATTTTTTTTTATCTGACCATGGACTTTCTCCACTTCTTTCTGGAAAACTTG CAAAATGATCTTCTTTCAGTTGTGTTTGTATCATATATCGGATTTATATCTCAATAACCTTGAAGGCATCTACCTTTATC CACCATAAAAAAAGGTCAATTACTTTGTTTCTGATGTTTTATTGATGACAAAGAAGATCTTCTGATAAATGTGTATATGG AAAGCTTTTAAGTATTAATTGAAGTAAGGAAATATATGAGAGAAGGTTGACAAAAAATTAATTAGGTTAACAATGCTTGT AAGTTCTTTTAAAAGAAATTTAAGGCTCTGTGTAGAGCTTGTGTTAGCCAGATGAAAATGCCATAATGATTGTTGTGTTA TGGTAGTACCAAATAATTTCCTGCTATTGCTACTTATAGAAACATATTTTTCTTCAATAATTCAAACATTTTCTTAATCC TTTTGGTTCCTTTTTGCTGAACTTGTAGGAGATGGTCTCACCGACTCATTACGCGGTCTATCTAGCGCTGAGGTTTTAAC TTCAATTTCCTAAGTATTCCTAAAATTAATTTTCTGCTGTTGCATTTGATTTTAAATATTTCTCTAGTTCCTTGGACAAC TTTAGCAATATCGATTTCTCATAAATTATATTTTTTATTATTTGTGTATAGAATTAGTTTCTGCTTGAAGTTCCTTTTAT TTAAAAATCTAATTTATATCTTTTGGCCAAAATAAATATACACGTTTTCCATGTAGAAATGTGCCAGAGAGAACTTGATT CAGGTGCTAATATAATTACTTGAAAGGTGTAGAATCTGAACTTGCCTGAGCAATGCCACCTTGCTGTATTCGTGAATTTT AAATTTACCTATGTAGTATGGTAGCTTGATTTAGGCATGCGTTATTTTTAGTTTTTTTGGATTTTCCTTATTTTATTAAT TTTGGTCTCTACCGATTAGTTCATGGATTGGCTTCTTAATAACTTTGGCCCTCCAATCCTTAACCTTTGTGGTCCTCCCA AGTTTTAAATATTGGCTCACTCACATCATGTATTACTTCATCAAGATCGCTGATGAACATTTTGATTTCATTAGAAGTCT AGTCATCTGAATATGTACTATTCTGTTGGCTGTGCTACCTTCGAATATTTCTGTGGAAGTGTGCATTTCTTGATTTTTCT CTACTTCTCTCATTACATTTATAAATTTCACATTTATTTATTTTTTCTTTGAAGTAGTCATACCTGAGTTTATCTGAATA CAGATATAGCATTTTTCTTTCTATCTTAAACCTTACCCCGCAAATTACTCTGTGCGTGCAGGTGAAGAGTGTCATTGATT GGAGGGATTTCTATTCCAGAACTTATAAGTGAGTCATATTTCCGGCAAGCTATTTTTTATCCTCAAAGTAGCTGACTAAA GTAATCAATGATTCAGAATGCATCCATTGCACCATTATATTTTGCAAGTTCATGCTTTTCAGCTAATTGATTGACTTTGT TAGATTCTAGACCTTAGACCCTACAAGGCTTATTAGTTATTACACTTTTGGATTCTTTTTATACTGCATTTGGACATTAG TTTTGACGGCTTTCTTAGGGATAGATTACAAAAACTTTTTGCAAGCGCCTGTTCAGCTTCTGTTTTTTGCATTGTTTTAT TGTTGTTTCTGTTAGAACTCAACCAAGAACTGATTCTATTCTTTTAAAATAACCCTAATTCCCAATTTGGGAATCAGAGG AAATATATGAGAGAGATGCCAAACACCCTCCCTAATCCTAGAAAGAGACCCAATGCTCTCTCTAAACCCCAAATCCCAAA TGAATACCAAGATGATCCCTATTGCTCACTAACGTCTTATTTATAGGCAAACTAACCCTATAACTCACTAAAAACTAATA ACTCTTCTTAACTAACCCCGTATACCTATCAGTTTCATTATGGAATTTGTTGTTTAGCATCTTTGGATAGCGTTGGGTTA GCCCTAGGTCCTTGGACAAGTTTTTGTTGAATAGGCTGGTTTTGGTAGAATTAAATAATCCAAAAATAAATAGCGGTTTG TGCTGTTTTAAGAAGGTTGATGGAAACAACAACAAAGAAGATTAAAAGAAGAATTTAGACAACAGTAGGAACTAGGAAGG AGGTGAATTAGATTCACTGTCGTTAAGAGTTCATTCAGCACAATTCTGAAGACTCCCCAAGATTTAAAAGTCTCTTCTGC TCTTGGATCAGGAACCATAAGTTTATAACCCAGAAGATGTAGAAGAAGAGAGGAGTGGAGGTGATCTGACGACTGAAGCG TGTCTCTATATATAGGGGATAAATTGTTAACTACGAAGTTTGGACAGTGGTGATTTAATGTGGATGGTGGACCAATAAGA GATGGACGGTGCTATCGGTGCTTTAATGTTTGTCACAAGGTAAACATTTAACATGTGGAAAATGTGATTGTAAAACTCGA AAGTTGATGACTCAGGTAAAAAGACCATGAGGCCCAATTGTTTAGCGCATACTAGGGGGGTAAATCAGACAATTTGCACT GGATTTAGTCAACTGTGGCCCGAGCTCATGCGTGGGAGCCCAATCCTCTCCTTGGCCATTTTTACCTCATCTGAGTTAAG TTCGGTGTATAAACTCTCAAGCAATTCTTGACACAAGCAATATGGGACTTCTATGTTTTGAAATGACTCATCGTAAAATA CCCCATAGTTTCAAAAGCTTAGGAGGATATTTTAGAAGGAATTTCAATGAGTATCTTTTGGGTTACCACTATGGTATTGA TGCTTTTGTTAGATATCATGTACTGGGTCAACCCCAGGGTTTAGATACCTTTTCACCTTCATTGGTGATTCCTTGCACCT GATTATTTTTAATGAAAAATAGGTCAGAGTTGTTCCCACAGTAGTTTTACCATGAAGTGAAACACAATTTGGTGTTCGTA TTCTCACTTTACGTAGTGATAACGCCTGTGAATACTTGTATATGTCCATTCAATCCTTTATTTGCATGTCATTCTTCTCC AAACATCATGTGCTCACACGTCTCAACAAAATGGGGTTGCTGAAAGGATAAATCGTCACCTAATTGAAACAACTTGGACA CTTTTAATCCATGGTAATGTTCCTCGTCATTTATGGGGGATATTGTCCTTACTGCTTGTTACCTAATTAATTGGATGACC TCCTCAGTCGTTAATAACCGAGTACCCCATTATGTGTTTTTTCTTCAACAGGCCTTGCATTCTTTGACTCCTCGTGTATT TGGGTCTACTTGTTTTTTCTTTCCATAATCTCAGTCTGGGTCTCAATATACTTTATGCTCAGTCTCATAAGTGTGTCTTC TTAGGTTACACTCTATCTCATCAGGGTTATAAATGTTACTCTCTGTTAGGACTTAGGAATAAGTGACCGTTAGCATTGCC GGAGACTGTTAGAACTGTTAAATTCTGTTAGTAAGTTCACAGTTTATTTTTGCACTGTTGTGACAGCTGTAACTAACTCT ATGTGCTGAATTTGTAAGGGTTCTCTTGGATGCTATCTTTCTCAAGCTCTAGATAAGAGCATTATAACACATGGTGCTGA TTCATTCAATACAGAAATATTCAGATTCACTTACTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGTTTCTCAATA TGGTATCAAGAGCTTCTTCTTGATCCTCCATGGCTTCCACACCTGTTTCTGCGCCTGGAAGCACTTTTGCTTCCAATTTT GCTTCCTTCACCTTCTCTCATCAAATCACAATTCTACTTGATGAGAAGAATTTCAACTCCTGGAAACAACAAATTGAAGA AGTTCTTCGAGGTCACATACTCCATAGATTTTTGGTAAATCATGTGATTCCCCTCAAATATCTGACAGAGGAAGATAGAG TTGCAGATAATGTCAATCCTCTATACAGTGAATGGGAACAGCAAGATTCACTACTCTTTACCTGGTTACTTTCTTCTCTT CTTCGATACTGCCTCATGTGGTGTGTTCATTCCTGACAAATGTGGAAAAAACTTCACAGCTTCTTCGATGAACTCGCCAA AGTACAATCTGGTGTTCTTCGCGCAGAATTGAAGAATATTTCAAAAGGGCTTTCGCCATTATTAGAATTAGTTTAATGTC GCCAACATGTTAGTTCTACTCCTAGTTTTAACTGATTCATCCACACATGATGCGAGGTTTAAGTCTAATTTGCTTACTTT TAGAAGGCCGAAATTAGGTAGGAAAAAAACTGGGGGACCAAAATAACATATAGTTCAAGCTAAGAGACCAAAATTGCAGT TGAGCCTAATTTATTTTTCTAGTCTTTTTTTTTTTACAAGTCTAGTAATTATTTTATTTTATTTGTTTAGGTACGTTGGC AAACTAGTTGGTCGATACTACGATAGCCAGGGAAATCCTACTAAATACTTGAAAGGGGTTGAAGCAAAGGCCGCCAGAGG TGCACAGCTTCTAGAAAAGCAGAAGACTGAAGAGGCTAAGCAACCTGCATGCAATTCAAGATGGAGTCAAGATGAAGGTG GAGAGGTATACATTGATATCATTGTTCTAGATCAGCTTTTTTACAACTTATGCTGTTTCTCCCAATCACAATTGGGTATG TTATACATGAGATTGGTGGTGAGTCATGGTTATCCTGTTTCTTTTTTTTACTTTTGGATACATGGTTATCCTATTACTTT TTAAGTTCCTTATATTTTACGTCCAAACTACCTTGTTTATGAAATCAAATAATATGGAAAACAAATGAAATAATATAGTG GGCTAAGGGTGTGTTTTTGAGTTGAGTTTTGAGTTTTGGAAAGGAGGGCAGAGAGAGGCTTATGAGAAGCCCTCCCCTTG TTTGGGAGATTTTAAAGGGGGGGGAGGCTTTGGGGTATTTCTAAAAACCCTCTCTTAGTTATATTTTTTATTTCCCCCAA ATTGGGGGGTTTTGGACTCCCAAACAAGGGAAGAGCTTAGTCTTGCGCTCCCCTCCCATTCCCCTCAAAGTCTTCCCCTC CCCTCCCCTCCCCTAAAAGCTCACAAATACACCCTAAATGAATAGGATAAACATATTAAGAAAACTTTCATGGAATTGAT AATTTTGATTAGCTTTGAATTTATTAGAATGAGCTGTCCTATTAAATAAAAAAACGAAATATTTGACCGCTAACTTGTCA TGAGTAAGACGTGCATGTTAGGATCAGCGGTGTGAGAATTGATTTTGGTAAAAAAAATTGAAAGCGATTTTGGTAAAATT GATTAGGCTAAAAGCGAGTTAAAGTGAACTGAAAGTGAAGTGATTTATTCTAGGATACATCTATAGGAAAGATGATTTCT ATAGGGATGTTTTAAAATGTAGTTATGAAATCCCATACTAAGTTGATTGTCATAAATCTACATAACCACCTCCACCTAAA AGTGATTCTGGTCAATGGGAATTGATTCTAAGGCTATCCAACATGGAACCAAAACACGCACTCCAAAGCACTTAGCCACA CTTTGGTTTGATGAACTTCAGAAAAATGTGTTCTTATTTGCTGAATGTGACTTGCAAAAGATAATATGTGGACCCATTTC CTTATGGAAACTGCAATTGCAAGATGAACTTTATTGCTATTGTAACTGTGTGATGCAAATAGCAGTTCTGAACTTTGTAT GATGGAAAAAAGAGTAGCTGGTGACTGGGATTGAGCTTATTGAGCTTATATATATAACAGGCTTTCCCACACATAGGTGC TGGAGAAGGCATATTGTTTGTTCCAACTGAAATTTTCAGCATATTTTCCACACATAGATTAATGCAGATGTTTAACATGT TGACACTGGTTTACCACTTCTGTTCAGGTATGGTGTGAAGTTGGCTACCCTAGGTTGGTTCAGAGGCCACTTGAAATTGC GATGACCGGGAAGATGAGCAGGCGTTGTGCTTGCTTTGAAGAGTCTCAGCTGGGCCAAACTGGTTTAGAACTATATGAAG GGTGTGATTACCATGCTAACAGGTGTAAAGCCTAATCAATAATCTAACACCCATAGGGAAATTCCTTTATGGGGTATATG TATGTATTTACATGTGTGCTCAAATATGTATACTAAAGTTTAATTTAGTGAAGCTGGGGATTTTTTGTCATGGCAACTTT TGTTATTCCTTTTTTCTTCTGTCATTTATCTTATTTTTCAGAATAATTTATATGTATGGACCGTCAACCAATCAGATTTA TAAAAAATATGGTATAAACAATTTTTATTTACTTTAATTAGTTT
CDS sequence (LotjaGi6g1v0029700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTTGAAAACACTAGCAACCTCTCCTCTTTCAGTGATCACATTTGTGGTCCTTCTTCTCGCTCTCTATCTCAGATT TTCCATCAAATTCGACTCCGCACAACCGGCACAGAGGTTGTTCAATGCTGAAGAGCTTGCATTGTTCAATGGAACTGATG AAGGGTTGCCAATTCTTCTAGGAATTCTTGGATCTGTGTATGATGTAACAAAGGGAAAATCTCATTATGGTTCAGGAGGG GGCTACAATCATTTTGCTGGAAGGGATGCTTCTCGCGCGTTTGTGTCAGGAAATTTCACAGGAGATGGTCTCACCGACTC ATTACGCGGTCTATCTAGCGCTGAGGTGAAGAGTGTCATTGATTGGAGGGATTTCTATTCCAGAACTTATAAGTACGTTG GCAAACTAGTTGGTCGATACTACGATAGCCAGGGAAATCCTACTAAATACTTGAAAGGGGTTGAAGCAAAGGCCGCCAGA GGTGCACAGCTTCTAGAAAAGCAGAAGACTGAAGAGGCTAAGCAACCTGCATGCAATTCAAGATGGAGTCAAGATGAAGG TGGAGAGGTATGGTGTGAAGTTGGCTACCCTAGGTTGGTTCAGAGGCCACTTGAAATTGCGATGACCGGGAAGATGAGCA GGCGTTGTGCTTGCTTTGAAGAGTCTCAGCTGGGCCAAACTGGTTTAGAACTATATGAAGGGTGTGATTACCATGCTAAC AGGTGTAAAGCCTAA
Protein sequence (LotjaGi6g1v0029700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLKTLATSPLSVITFVVLLLALYLRFSIKFDSAQPAQRLFNAEELALFNGTDEGLPILLGILGSVYDVTKGKSHYGSGG GYNHFAGRDASRAFVSGNFTGDGLTDSLRGLSSAEVKSVIDWRDFYSRTYKYVGKLVGRYYDSQGNPTKYLKGVEAKAAR GAQLLEKQKTEEAKQPACNSRWSQDEGGEVWCEVGYPRLVQRPLEIAMTGKMSRRCACFEESQLGQTGLELYEGCDYHAN RCKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 25 | 20 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| PANTHER | 10 | 241 | 232 | 1.6E-91 | – | |
| PANTHER | 10 | 241 | 232 | 1.6E-91 | – | |
| Phobius | 26 | 244 | 219 | - | – | |
| SUPERFAMILY | 36 | 137 | 102 | 5.83E-26 | ||
| Gene3D | 37 | 138 | 102 | 2.4E-35 | ||
| SMART | 41 | 137 | 97 | 3.6E-22 | ||
| Pfam | 43 | 104 | 62 | 2.0E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0029700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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