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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0034500 |
| Transcript ID | LotjaGi6g1v0034500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein; TAIR: AT4G35670.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720; TrEMBL-Plants: tr|G7JXT8|G7JXT8_MEDTR Polygalacturonase/glycoside hydrolase family protein; Found in the gene: LotjaGi6g1v0034500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:6481100..6483574) extracted from Lotus japonicus Gifu genome v1.2.
CATATTCTAGCTTCCACAATCAAATCTCAGTGTTATTTTTATCTCCAAAATGAAAGACATATTTTTAGTCCTCTTAATAA TGGTTGTCATTGCCACTCCTAGCTTGTGTGTTACAGTAGTCCCTCATGCAGATTCCAGCTTCAATGTTGTTAGCTATGGT GCAAAAGGAGATGGCCAGACTGACGATTCACAAGTATATTTTTACTACTTTCATATTATTTCATATAACTATGATTATAA TTTACTATTTATTCTTTTATTATGAGACTTAAATTCTTAAAATTGATACATTTTTTATTTATTTTGCAATTTATAAAGGC CTTTGAGAAAGCATGGCAAAACGTGTGTGGTGCAACACAAGACACCACAACACTTCTCATACCTGAAGGGAAAACGTTCT TGTTGCAACCCATGCTATTTAAGGGTCCTTGCAAAAGTGGCACTATTAACATTGAGGTAAATCGTAAATAAATTAACTTC ACGTACATTACCAAACTAAGGAAGCAGTTTTTATATATATCGTCTGTATGTTCATGCCTTGATTAATTGGTCAATCATAC ATATGATGTTTTTATCATTTGACTTAATTATTTGAAATTAATTTTTAAGAGTATTTTTATTCTTTACAAAGGTCAAATTT ACAAAATGCACGAGACCATTCCCGCTATTTTAAACTTATTTCAATAATTTAAGAAATTTTCTTGAATTTCATTCAAGGAA AAGTAGTATTATTATTTTTTTCGTCCATTTATTGTCAAAATATTTCTTTCAGCCAAATATAATGTTCAAGATAGTACTTT TTTCTGTTTGGTAGTTTCAAGGAACTATCGTCGCCCCAAAAACCCAAGGTGCTTGGAAGTGGGGTGGTCTTAATAAGGGA GCATGGGTGAAGTTCTCGGGAATAAGTAACCTTGTCATCCAGGGAGGAGGAAAAATAGATGGAGAAGGTGCTTCTTGGTG GCAAACTTACCCAGAAATTACACCAAATGTAAGTTCATGAATAACATGATAGACTTTTATTTTGTGTTAAAGTACATGCA TATTCTATTGAGTGAATCATACTCAAGGTACAATTTTCTATAGTCTATCATGATAAAATTGAAAAACATAATAGAGTACT GAAAATTATATATTTGAATTTAGAAATGCATTTAAATAGAATTAGAGTTAAATATAACAAAATTGACCACATCCGCAGGC ACTTCAATTCCATCAATGTAAGAATCTAAGGCTTAGCAACTTGACTCACATCAACAGCCCAAAAATTCATATAAGCATAT ATTCATGCAATGACTTTAGCATCGCGAACATTCATATTATTGCTCCAGAGAAAAGTCAATCCACCGACGGGATTGATATC ACAAGATCATCTAACATCCTCGTTGAGAATTCTAATATTGAAACAGGTAATTTATCAATTATTATATACTCCTTACTTGA CATTTAGAAAATATTATTATCATACTCAATGATCACTATTTATTTTCATATTATTATCATATATTTAGATTGATCATAAA TTTAAAAATATAACTAATTTTAGGTTATTTGTTTTTTTCTTTAATATTAATTATTACATATAGGGGGTGACTGCATTGCC ATTAATAATGGTTCCACCTTCATCAACATAACTGGTGTTACATGTGGTCCTGGTCATGGCATAAGGTCAATTTTTTTTTT GAGATTATTTTATTGAGATGCTTGACCAAAATTTAAACTCACTTTGGGCTATGTTGGAAATTAATAGTGTTGGGAGTCTT GGAAAAAACAATACATATGAAACGGCAGAAGAGATATATGTACACAATTGTACCTTCATAGGAACTCAAAATGGAGCTAG AATCAAGACATGGAGGGTAATAATGATTCACTCTATCTTTGGATGAACTACTGTAATGAAGCAAGTATTAAACTACAATA ATATTGTTTTTTTCTTTTTAATCAGGGAGGATCTGGATACGCAAGAAAAATAACATTTGAAGATATCATACTTGTTGGAG CAAAGAACCCTATTATCATTGACGAACAGTTTTATGCTATTGGACATAATGATATACACACGGGAGTGCAAGTGAGTGAT GTGACTTATGACAATGTGAGGGGAACCACAGATTCTAATAATGCAATCTCATTGACATGTGACGACAAAGTTGGTTGCAC CAATCTTGTATTCAATAATATTAATATAACCACTATGAGTGGATCAGAACCATTTGTAGAATGCTATATGGCACATGGGA AATGCTCTTCGAGTTTTCCAAATGTCACATGTCTTTCTGCATAGTAACAGAGGTTTTGATGTTACTATGAAATGTTGAAA TAAGAATTTATGTATGAAATGTTTGAGAGTATAAACATTGAAAAATATTTCAATATAATGGATAAGAAGAAAAGTATTTT AGTAATGTTTAATTTTGATTGATTAAGTGAAGATTTGTTATTGATACAATGTGCATCATTCATCGAATCTAGAGA
CDS sequence (LotjaGi6g1v0034500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGACATATTTTTAGTCCTCTTAATAATGGTTGTCATTGCCACTCCTAGCTTGTGTGTTACAGTAGTCCCTCATGC AGATTCCAGCTTCAATGTTGTTAGCTATGGTGCAAAAGGAGATGGCCAGACTGACGATTCACAAGCCTTTGAGAAAGCAT GGCAAAACGTGTGTGGTGCAACACAAGACACCACAACACTTCTCATACCTGAAGGGAAAACGTTCTTGTTGCAACCCATG CTATTTAAGGGTCCTTGCAAAAGTGGCACTATTAACATTGAGTTTCAAGGAACTATCGTCGCCCCAAAAACCCAAGGTGC TTGGAAGTGGGGTGGTCTTAATAAGGGAGCATGGGTGAAGTTCTCGGGAATAAGTAACCTTGTCATCCAGGGAGGAGGAA AAATAGATGGAGAAGGTGCTTCTTGGTGGCAAACTTACCCAGAAATTACACCAAATGCACTTCAATTCCATCAATGTAAG AATCTAAGGCTTAGCAACTTGACTCACATCAACAGCCCAAAAATTCATATAAGCATATATTCATGCAATGACTTTAGCAT CGCGAACATTCATATTATTGCTCCAGAGAAAAGTCAATCCACCGACGGGATTGATATCACAAGATCATCTAACATCCTCG TTGAGAATTCTAATATTGAAACAGGGGGTGACTGCATTGCCATTAATAATGGTTCCACCTTCATCAACATAACTGGTGTT ACATGTGGTCCTGGTCATGGCATAAGTGTTGGGAGTCTTGGAAAAAACAATACATATGAAACGGCAGAAGAGATATATGT ACACAATTGTACCTTCATAGGAACTCAAAATGGAGCTAGAATCAAGACATGGAGGGGAGGATCTGGATACGCAAGAAAAA TAACATTTGAAGATATCATACTTGTTGGAGCAAAGAACCCTATTATCATTGACGAACAGTTTTATGCTATTGGACATAAT GATATACACACGGGAGTGCAAGTGAGTGATGTGACTTATGACAATGTGAGGGGAACCACAGATTCTAATAATGCAATCTC ATTGACATGTGACGACAAAGTTGGTTGCACCAATCTTGTATTCAATAATATTAATATAACCACTATGAGTGGATCAGAAC CATTTGTAGAATGCTATATGGCACATGGGAAATGCTCTTCGAGTTTTCCAAATGTCACATGTCTTTCTGCATAG
Protein sequence (LotjaGi6g1v0034500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKDIFLVLLIMVVIATPSLCVTVVPHADSSFNVVSYGAKGDGQTDDSQAFEKAWQNVCGATQDTTTLLIPEGKTFLLQPM LFKGPCKSGTINIEFQGTIVAPKTQGAWKWGGLNKGAWVKFSGISNLVIQGGGKIDGEGASWWQTYPEITPNALQFHQCK NLRLSNLTHINSPKIHISIYSCNDFSIANIHIIAPEKSQSTDGIDITRSSNILVENSNIETGGDCIAINNGSTFINITGV TCGPGHGISVGSLGKNNTYETAEEIYVHNCTFIGTQNGARIKTWRGGSGYARKITFEDIILVGAKNPIIIDEQFYAIGHN DIHTGVQVSDVTYDNVRGTTDSNNAISLTCDDKVGCTNLVFNNINITTMSGSEPFVECYMAHGKCSSSFPNVTCLSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| PANTHER | 15 | 396 | 382 | 2.8E-151 | – | |
| PANTHER | 15 | 396 | 382 | 2.8E-151 | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| SUPERFAMILY | 16 | 395 | 380 | 3.97E-114 | ||
| Gene3D | 20 | 394 | 375 | 5.3E-115 | ||
| Phobius | 21 | 397 | 377 | - | – | |
| Pfam | 63 | 384 | 322 | 2.1E-85 | ||
| SMART | 182 | 208 | 27 | 1200.0 | ||
| SMART | 209 | 230 | 22 | 15.0 | ||
| ProSitePatterns | 239 | 252 | 14 | - | ||
| SMART | 262 | 283 | 22 | 130.0 | ||
| SMART | 291 | 312 | 22 | 7800.0 | ||
| SMART | 323 | 350 | 28 | 1600.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi6g1v0034500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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