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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0035700 |
| Transcript ID | LotjaGi6g1v0035700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT3G13540.1 myb domain protein 5; Swiss-Prot: sp|Q38850|MYB5_ARATH Transcription repressor MYB5; TrEMBL-Plants: tr|A0A151RC88|A0A151RC88_CAJCA Transcription repressor MYB5; Found in the gene: LotjaGi6g1v0035700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:6850988..6855374) extracted from Lotus japonicus Gifu genome v1.2.
AGACAAACAAACGTGGATCTCAGCAGCGAGGGTGAGCGCGTGTCAGGCGATGATGAAATCATGAAATGAAATAGAAAAAG AGATAGGGAAGAGAGAGAGAGAGAAAGCTAGCAGAGAAAGAAAAAGAAAGAGAGTCGACAGAGAGAAGCAACAATCAAAC ATTACTCAACAATCTCTCTGATCTGACTATTCAGATATAGTAACCCAAGTGCTGTAGAGCTATTGAAATGAGGAACCCGA TAGCATCATCATCAACGAACAAGAAGAAGAGCAGTACTACAACTGGTAATGAAAATGGCACGACTGTTACTACTACTCCG TGCTGCAGCAAAGTTGGGTTGAAGAGAGGGCCATGGACACCGGAGGAAGACGAGGTGTTGGCCAGTTTCATAAGGAAAGA AGGCGAAGGTCGCTGGAGAACGCTTCCAAAAAGAGCCGGCCTCCTCCGCTGCGGTAAGAGCTGCCGCCTCCGCTGGATGA ACTACCTCCGCCCCTCTGTCAAACGCGGCCAGATCGCCCCCGACGAAGAAGATCTCATCCTCCGCCTTCACCGCCTCCTC GGCAACCGGTACCTCCTCTCCTCGATCGATCTTCCTTTTATCTAGCTTAGGGTTTGCTACGAACTTTGCTTAACTAATTA ATTAATTTTAAATAAACATATATATATATAGCTAGGGCTTGATTTAATTACACTTTATTTAATTACCATTTCATCAATCA TGTTTAGGATATAGTACAACAATTCATTTTGAAACTAACATTAATTCTAGCAAGAAGCTTTCTTAAATAGCTTCTGGGTG TTAAAATTAATTCTGATGATTCTGATGTTACAGGTGGTCTTTGATAGCGGGAAGAATTCCGGGAAGAACTGATAATGAGA TAAAGAACTTCTGGAACACCCATCTCAGCAAGAAGCTTATCAGCCAAGGGATTGATCCAAGAACCCACAAGCCTCTCAAC CCAGAACTATCTATTCCCTCTTCTTCCACTACTCCACCACCACCACCACCTTCCAAGCCTCTTCCTGTGATCACAAATCA CCAAACACTTCATGAAACTACTACTCATCATCATCTCAATATTGCTAGTGTCAACCAAGAATGTGATGAGGGTCAATATC AATATCAACAACCTCAAGCAGTAGCTGCTGCTGCATATATGGTAGCTAATGATATTCCTGATGATGATGTTCCTTCCATG GGTCATCTACTTGCCAACAACAACAACAACCAGGACTACAATGATATCAATTATTGTTCTGATGATATCTTTTCTTCCTT CCTCAATTCTCTGATCAATGAGGATGCTTTCTCTGCCCAGCGCCACCTGCAATCGGAGCATCATGATGACCTTGCACAGG ATCCTGTAACTTCATCAACACCACAAGGTTATAATGGCATTGGTGTTGCATGGGAATTGCCCCTCATGCCTGCTAATTTC AGCCAAAATGAACACAGCCATGAGGTTGATGATCATCACAAATAGCAAGCATATATATCTAGTGCATGTTGATTAATTGC AGTTGGTAATTAAATGCTTCATCAGATCCATATAGATACATACCAAGACTACTGGGATTTAAATATGTATTTTGTACCAT GCATTTATGTTTACACTTTAATTATTGGTGTGTTGAATTTGGAGTGGTCCTATATATACATTAATACATATATGCATGCA TGTAATATAGAGATTTGCTTTTTCAATTTGTTTATGTAAGCTGGAGTTGATTCAGATGTTTTAATACTATATGTCTCCAA CATTCAAGGTTTACTCATTAGGGCTTTTTTTTTTACATATCAGCAAAAACAATATATGAAGATAAAAGAGGCCTCCATGC ATATACAAATACAATCAAGAACCTAACAGCTATCTCAGAGTTGTTTCAAACACTGCAAAGGAGAGTTACGTTTACACTAA TCTGAAAAAAGAAGAAGTTCCAACCCTCATCTAAATTAGCTGAAAATCATGTCCAAGATCTAATATTTATAAGATTCAAA ATCAAATCTCTTCTACTTAAATATAATGTCATTACAGTTGATCCAAATTAAATAGAGTAGATAACTACTAACCAATCCGG CATCCATACCTTCTAAAGTTTCTTCCCTATGACCAGCGCCAACCATGTTGAAGAATGAAGAAAGTATTGAACAATTGAAC TATGAACTCTGGCCAGTACCACGTACTACAAGAAAAAGAACATTCTGCGGTTGTGTGTACGTTCTTCTAAACTTTCTTCC CTATGCACCATAATCTTGAAGATTATCAACTGGATTTGGAAAACGAATGTTTTTTTTTGTTACATAAAACAAATGTGAAG ATATTCAATCTGCTCATAACAAAATACACACTGTTTATGATCCTATAAGTGTAAAAGAATTATACAATATTAATGAGTTT GATGAAAAAAATAAAATTTCAAATTCATTATAAAAAAAATGTAGATGATAGTGTAAGACTGTTTTACCGTTGTATTTTCC TCCTTACCAAAAAAAAAGACTGTTTTACCGTTGACTGTATTATGCTTATAAAAAAAACCATTGAAAATATGATAAATATA CAAACTAATTAATGTTGGAGAATAAATCAATATTTAATGAGAACAAAGAAGCACAAAGAATATAAAGTATATACACATCA AGAATTCAGATGTAATGGATTAATTGATAATTATAGGCTGTATAATTTGGAGAGGGATAAAATCTATAAATAAATATCGT TGTAGTATTCTCCTAAACTCCGGGTCCAAATCTTAAAGGGTCAGGTAAGTTCTAGTTCAGGTCCTGAATTAGGGTGAAAG TAAATATATTTTTCCTAGCTTAATTTAGTGTCCTTTTATATGATTTAGCTATACTTCTTGATCTAGAGCCGGTCGAGGGT TGATCAAGGTTGTAGAAGGAGGAGGATTCAGAGGTTTGAGGAGTGTTGGCTTAGGTAGTGATGAGGTCCTTTGTACCTCT TGGCTGCATACGAATGTGGATCCATATGATAAGGCTAATGCTTGGATCTCTTAGAGTTGGCTTAGTGGGCAAAACAATGT TTGGTGATTTTTTTTTATAAGCCAAGTCATTGCATTTAAAATAGCACAAGAAGTGCTACTTACCCGAATACAATGAAAAA AGAACAGTCAGAGAAGACTAAGTCCACAAAATAAGAAAATCATGATACAAGAAATAGGAAAGAAAGGGGAAATGGAAAAT AATGTTTGGTGATATGATGTTGCGAGAAAAATAACCCAAGAAGGGTGGGGGTATGGTTTTTAGGAGTTTTAAGCTTTTCA ATGACAGTTTTCTTTCAAAACAAGGTTGGCAATTTTTGCAATGCCTAGTCTCCTTAATAGCTAAATCTCTAAAAACAAGA TATTTCCCTAAATCACATTTTATTCAATTCATGTTAGTACGGGAAACTTATCTAGGTATACTTGGAGGAGCATTTGACAA GAGGATTGGATTATAATAAAAAGGTTGTTATTGGAGGGTTGGAAGTGGGTATGGTATTCGAGTATGGAAAGATAATCGGT TAGCTAGGCAGAGTTGTTTTTATGGTATGGTCTTCTAGGCCTTCTGATAGTGAGGTTAGGTTACTTACTTGTTCAACCGT ATTCATAGAGAAACAATGGACTGGATCCACTCAAATTTTATTTCCTTTGAGGTAACTCAAATTTCTCAAATTCCCTCGTT AGATATGGAATGGAGATGAGAATTTTATGATTAAATCTTCTTATCACTATATCAAGGAGTGGGAGAAGTGTATGGTTCTC CAGGTTCCTATGCAGATATGCTGGAACCTTCCAGTGTTTTATGGTAGATATTATGGAAGCTTAAAATTCTCCCTTGTCAA GCTCATCTGATCAGGCGTGTTCTTATTATAGGGTTGTTCCAACAAGGACAATGTTGTGGAATAGAGGCATGAACTTCCCT CCATGGTCCCTGTGTTGTGAATGGGTGGAGGAAACGTTTGGTCATGCTTTTCGGGATTGTCATTGGAATAGAGGTGTGTG GTTTGTATTTGTGTTGGGTTTTACTTGGGATTAATCTCCAAGGCAAAGCTTCTCAGATTGTTTGGAACAATTGTTTGGAA GGAAATTGGCTTTCAAAAGGTAATATTTAATTGGAAAACTTAATAATAAAAAAGCATTGCATAAAGTTCCTGAAGAATCA AAAACGTTTTTACTTTATTTTTTATATATACAGCATGAAGTAATTGGTACAATTTTAGGTGAACTGAGACTTTGTAAAGA ACAAATGGAAACACTATAAACTATTTACTTGACTGGTTCGTAGTTCAACGCGTTGGACCGGTTGGTCCAGTTTCTACTAA TATGAAGTTAAAAGAATTTTGTTCTTAGCCATGTTCTTTTCTTTTTTTGGACAATCCAACTACTCCC
CDS sequence (LotjaGi6g1v0035700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAACCCGATAGCATCATCATCAACGAACAAGAAGAAGAGCAGTACTACAACTGGTAATGAAAATGGCACGACTGT TACTACTACTCCGTGCTGCAGCAAAGTTGGGTTGAAGAGAGGGCCATGGACACCGGAGGAAGACGAGGTGTTGGCCAGTT TCATAAGGAAAGAAGGCGAAGGTCGCTGGAGAACGCTTCCAAAAAGAGCCGGCCTCCTCCGCTGCGGTAAGAGCTGCCGC CTCCGCTGGATGAACTACCTCCGCCCCTCTGTCAAACGCGGCCAGATCGCCCCCGACGAAGAAGATCTCATCCTCCGCCT TCACCGCCTCCTCGGCAACCGGTGGTCTTTGATAGCGGGAAGAATTCCGGGAAGAACTGATAATGAGATAAAGAACTTCT GGAACACCCATCTCAGCAAGAAGCTTATCAGCCAAGGGATTGATCCAAGAACCCACAAGCCTCTCAACCCAGAACTATCT ATTCCCTCTTCTTCCACTACTCCACCACCACCACCACCTTCCAAGCCTCTTCCTGTGATCACAAATCACCAAACACTTCA TGAAACTACTACTCATCATCATCTCAATATTGCTAGTGTCAACCAAGAATGTGATGAGGGTCAATATCAATATCAACAAC CTCAAGCAGTAGCTGCTGCTGCATATATGGTAGCTAATGATATTCCTGATGATGATGTTCCTTCCATGGGTCATCTACTT GCCAACAACAACAACAACCAGGACTACAATGATATCAATTATTGTTCTGATGATATCTTTTCTTCCTTCCTCAATTCTCT GATCAATGAGGATGCTTTCTCTGCCCAGCGCCACCTGCAATCGGAGCATCATGATGACCTTGCACAGGATCCTGTAACTT CATCAACACCACAAGGTTATAATGGCATTGGTGTTGCATGGGAATTGCCCCTCATGCCTGCTAATTTCAGCCAAAATGAA CACAGCCATGAGGTTGATGATCATCACAAATAG
Protein sequence (LotjaGi6g1v0035700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRNPIASSSTNKKKSSTTTGNENGTTVTTTPCCSKVGLKRGPWTPEEDEVLASFIRKEGEGRWRTLPKRAGLLRCGKSCR LRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNFWNTHLSKKLISQGIDPRTHKPLNPELS IPSSSTTPPPPPPSKPLPVITNHQTLHETTTHHHLNIASVNQECDEGQYQYQQPQAVAAAAYMVANDIPDDDVPSMGHLL ANNNNNQDYNDINYCSDDIFSSFLNSLINEDAFSAQRHLQSEHHDDLAQDPVTSSTPQGYNGIGVAWELPLMPANFSQNE HSHEVDDHHK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PANTHER | 25 | 288 | 264 | 3.6E-111 | ||
| PANTHER | 25 | 288 | 264 | 3.6E-111 | – | |
| ProSiteProfiles | 35 | 87 | 53 | 15.876 | ||
| Gene3D | 37 | 93 | 57 | 1.1E-17 | – | |
| SUPERFAMILY | 37 | 134 | 98 | 5.14E-28 | ||
| SMART | 39 | 89 | 51 | 3.5E-12 | ||
| Pfam | 40 | 87 | 48 | 8.4E-14 | ||
| CDD | 42 | 87 | 46 | 3.03421E-10 | ||
| ProSiteProfiles | 88 | 142 | 55 | 23.855 | ||
| SMART | 92 | 140 | 49 | 5.9E-13 | ||
| Gene3D | 97 | 158 | 62 | 1.0E-17 | – | |
| Pfam | 97 | 138 | 42 | 1.7E-12 | ||
| CDD | 98 | 138 | 41 | 3.63804E-11 | ||
| MobiDBLite | 145 | 180 | 36 | - | – | |
| MobiDBLite | 163 | 178 | 16 | - | – | |
| MobiDBLite | 279 | 299 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0035700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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