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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0035900 |
| Transcript ID | LotjaGi6g1v0035900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor TFIID subunit 7; TAIR: AT1G55300.1 TBP-associated factor 7; Swiss-Prot: sp|B9DG24|TAF7_ARATH Transcription initiation factor TFIID subunit 7; TrEMBL-Plants: tr|I1KFI5|I1KFI5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0035900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:7020306..7023023) extracted from Lotus japonicus Gifu genome v1.2.
GGGAAAAAAAATTTACTGATCTCTTTCTCTCGGTAGTCGGTTGTGTAAAGAATACAGAGGGAATAGACTCACTGTCTGTT TCTCATTCTCAAATCGAAAATCCATCCCTCCTCCCTTACCACGTGTCTTCTGCCACCGCTCGCCACCAACTTCAGGCCAC CCTGCCACCGTCGCCGCCAATTTTCCGGGTTTCATTCTCATTCTCTTCGTCTCTCTCTCTCTCTCTGTATGTTTTCAATT ATAATTAGGGTTCGGCTTTGATTTTTTCATGTTCTTGTTTGTATAATTGATCACTATCTTGTGTTGATTTTGCTGTCAAT GATTATATTACGGTTACATTCTGTTATGCTTTTTGATTCTTCTGGTTCTCCTTATTTTATCTTACTTGCGCTAGGTTTTA TAGATTTTTGTAAATCAACTGAATTAAAGTCTGTTATGTGATTTCTAGATCAAATCATTTCCCATTTGTAACGATTCCAA ACTCAACCTAGTGGTTTAAGTTATGGAGGAGCAATTCATACTTAGAGTTCCACCTAATGTCGCGGAGCGGATAGAGCGTC TTCTGAATGAAAACAATCCTTCTTCATCTGAAGACAAGTCATTAGATTTGTCATTTAATGAGGATGGAAGGAGCGGTACA TTTGCGATCGAGGATGAGCACTTCCCAGCTTCTTTATTAGACCTTCCTTGTGTCGTTGAATCATACAAGACTTATGATGA CAACTCTTTGATTAAGAGTGCTGATATTGGTCAGGTGAAGTATCCATAATTATTCTCTGTCGTAATTTTACTCCTTAGGT TCATACAACTTACTAACTGCCTGCATTATGAACCCAACTAACAGATGATTATGGTGAGGGAATCTGGTGATGCTGCTCCA GATGAGATTGAGTACAGGCATGGCCTTACCCCTCCCATGAGAGATGCTCGCAAGCGTAGATTCCGCAGAGAACCTGATCT TAATGTATGCTGTTCTTTCGCATAATGTTAACTTAGCATTACCTCTCTAAATGTATATGTGTGTGTCAGCATGTTCGATC TCTTAGTTACCTTAATTTCCCCTCATTTTGCAGCCTGAGCTTGTATCCCGTGTTGAGAAAGACCTTCTCAAAATCATGGC AGGAGGAACAGCTGACAGTTTTGATATCCTTTTGTCTTGTTTGTTTCAAAAAGCTTATTATTGAGCATTCTAAGATTAGA TACACAAATGTATGATTCCACTTTAAGATTTCTCTCTTTTAAATTCATGGTTGCTGACAATTTTGATATCTTTTTGTCCT TTTTGTTTCAAACATCTATTTATAGAACTTCCCGAATCTTAGATACAAATTTATGACTCCACTTCAAAAAATTTCTCTTA GAAATTCATGGTTGATGAGATCATTGTCGTTGCTTACTCTTTTGCCCCTTTTAACACATTAGCTTTTCTCTCCTTTGCAT TGGGTTCATGGGATAAACCAGAATAGTATTTTGCATCAATGGCAAAATGAAGTTTTAGTCTGTTTTATGTGCATGTGGCA CATACACTCTAGAGCATGTTATCTCAAAAGATGCACATTTTAGTTTGTGATTTAACATGATTTTCTGACTTAGATGTGGT TTCCATAAGTGAAACCGAGCACATACTTTGTTGATTTATTGATAGTGTAAAAAAGCTTAACTTTGGATATTTCCTTGACC GAGACTCACATGTGGTAGCAGCTGAGCAAGAAGGGGATGAGAATGTGCGAGGTGCTAATAAAAAAACTGCACCTACACCT GAACCAAAGCATGATGCTCCGGAGACTCTTACAAATGCAGGGGATCCTGATAGGAGTGACTCTGATGAATCTGATGACTC AGTTTGACCGAAATTAGCAATCAATGAGTGTTTGTATCAGTGAGGGAAGCCTGAATTGTATAATTATTTATGGTAAATTT CAATCCCATCTACAATGTTTAAATCGGCTATGATGTTGAATTTTCTATCCATCTTGTGTATTTTCTTACTCGCTAACTGA TTTGTTGTATTACACCGATTGTTGTACATTAAACTACCGCATTTTAGTTTGCGGTATGTTGTGCTTTCGTACACACTACA AACTAGAATGCAGTGCTTCAATAAAACTTCACTAAGTTTGTGGCTGTTAGTTATTTAGCTTCCGTGGGACATATGTTGAG GTAGTTAATTTTTGACTCGTATGCGGTAAATAATAGATTGTGGAAAGAAATGTGTACATCTAGCTTCCCAATTTTTTTTC AGGAATAGCTTCCCAATTAAATTTTATTCAGGAATGAAAACTCAGAAATGCTGAGGATATTTTTATAAGTTACAGGATTC AAGGTGGTGTGTATCAGTGTATGTGAATTTGTGGGTGGGGTATTTAGTTTTGTCTAACGAACAATGACAGTCATTTCTTG AAGGCCCAATATCTCGTTTGGCTTATCCTAAAGCACTAAATTTTGCAACTACATACCTTGAGAGTATACATCACAATGAC CATCATACGATAAGTATACAGATGTGAAGAGCAAAAATACATTCAAATGATCATTGAATTTCATGCTAAAAGCATATGGA CCTTAAGACCATTACAGCACCAGAGCAAAAATAACACTAGAAATAGATAACAAATATGGAAGGTTTGACACTTGCAGCTT CAAACTCACACCAACAGGACCTATAGGTCCAAGTGCCGTAGAAGGCAAACTCCCACCTCCAGTGCTCAAGATAGAACT
CDS sequence (LotjaGi6g1v0035900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGCAATTCATACTTAGAGTTCCACCTAATGTCGCGGAGCGGATAGAGCGTCTTCTGAATGAAAACAATCCTTC TTCATCTGAAGACAAGTCATTAGATTTGTCATTTAATGAGGATGGAAGGAGCGGTACATTTGCGATCGAGGATGAGCACT TCCCAGCTTCTTTATTAGACCTTCCTTGTGTCGTTGAATCATACAAGACTTATGATGACAACTCTTTGATTAAGAGTGCT GATATTGGTCAGATGATTATGGTGAGGGAATCTGGTGATGCTGCTCCAGATGAGATTGAGTACAGGCATGGCCTTACCCC TCCCATGAGAGATGCTCGCAAGCGTAGATTCCGCAGAGAACCTGATCTTAATCCTGAGCTTGTATCCCGTGTTGAGAAAG ACCTTCTCAAAATCATGGCAGGAGGAACAGCTGACAGTTTTGATGTGGTAGCAGCTGAGCAAGAAGGGGATGAGAATGTG CGAGGTGCTAATAAAAAAACTGCACCTACACCTGAACCAAAGCATGATGCTCCGGAGACTCTTACAAATGCAGGGGATCC TGATAGGAGTGACTCTGATGAATCTGATGACTCAGTTTGA
Protein sequence (LotjaGi6g1v0035900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEQFILRVPPNVAERIERLLNENNPSSSEDKSLDLSFNEDGRSGTFAIEDEHFPASLLDLPCVVESYKTYDDNSLIKSA DIGQMIMVRESGDAAPDEIEYRHGLTPPMRDARKRRFRREPDLNPELVSRVEKDLLKIMAGGTADSFDVVAAEQEGDENV RGANKKTAPTPEPKHDAPETLTNAGDPDRSDSDESDDSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 198 | 198 | 9.3E-88 | – | |
| SMART | 1 | 146 | 146 | 8.7E-63 | ||
| Pfam | 1 | 138 | 138 | 3.8E-34 | ||
| PANTHER | 1 | 198 | 198 | 9.3E-88 | ||
| CDD | 2 | 145 | 144 | 3.15593E-44 | ||
| MobiDBLite | 149 | 199 | 51 | - | – | |
| MobiDBLite | 154 | 189 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIID complex | A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters. | ||
| Biological process | Transcription initiation from RNA polymerase II promoter | Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. |
Expression pattern of LotjaGi6g1v0035900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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